Vom1r63 (vomeronasal 1 receptor 63) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Vom1r63 (vomeronasal 1 receptor 63) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Vom1r63
Name: vomeronasal 1 receptor 63
RGD ID: 1359330
Description: INTERACTS WITH vinclozolin
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V1re15; vomernasal 1 receptor Vom1r63; vomeronasal 1 receptor, 63; vomeronasal 1 receptor, E15; vomeronasal type-1 receptor 4; vomeronasal V1r-type receptor V1re15
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8173,678,779 - 73,679,720 (+)NCBIGRCr8
mRatBN7.2164,763,845 - 64,764,786 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0168,670,127 - 68,671,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl168,670,127 - 68,671,059 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0169,455,614 - 69,456,546 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Vom1r63Ratvinclozolin decreases expressionEXP 6480464vinclozolin results in decreased expression of VOM1R63 mRNACTDPMID:23869203


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:19952141  



.

.
Variants in Vom1r63
6 total Variants

Predicted Target Of
Summary Value
Count of predictions:12
Count of miRNA genes:12
Interacting mature miRNAs:12
Transcripts:ENSRNOT00000043828
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 47 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat

1 to 10 of 47 rows



endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
respiratory system
1 2 1 1 1 2


RefSeq Transcripts NM_001008967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000043828   ⟹   ENSRNOP00000045582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl168,670,127 - 68,671,059 (+)Ensembl
RefSeq Acc Id: XM_039097196   ⟹   XP_038953124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8173,678,779 - 73,679,720 (+)NCBI
mRatBN7.2164,763,845 - 64,764,786 (+)NCBI
Protein RefSeqs XP_038953124 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000045582   ⟸   ENSRNOT00000043828
RefSeq Acc Id: XP_038953124   ⟸   XM_039097196

Name Modeler Protein Id AA Range Protein Structure
AF-Q5J3G5-F1-model_v2 AlphaFold Q5J3G5 1-310 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-61073 BioCyc
Ensembl Genes ENSRNOG00000048370 Ensembl
NCBI Gene 494311 ENTREZGENE
PhenoGen Vom1r63 PhenoGen
RatGTEx ENSRNOG00000048370 RatGTEx


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-06-08 Vom1r63  vomeronasal 1 receptor, 63  V1re15  vomeronasal 1 receptor, E15  Symbol and Name updated 2325755 APPROVED
2008-07-23 V1re15  vomeronasal 1 receptor, E15    vomeronasal 1 receptor, e15  Name updated 1299863 APPROVED
2005-07-29 V1re15  vomeronasal 1 receptor, e15      Symbol and Name status set to provisional 70820 PROVISIONAL