Or12d13 (olfactory receptor family 12 subfamily D member 13) - Rat Genome Database

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Gene: Or12d13 (olfactory receptor family 12 subfamily D member 13) Rattus norvegicus
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Symbol: Or12d13
Name: olfactory receptor family 12 subfamily D member 13
RGD ID: 1334232
Description: Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane. Orthologous to human OR12D1 (olfactory receptor family 12 subfamily D member 1 (gene/pseudogene)).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1734; olfactory receptor gene Olr1734; olfactory receptor Olr1734; Olr1734
RGD Orthologs
Human
Bonobo
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,250,936 - 1,251,877 (+)NCBIGRCr8
mRatBN7.2201,245,689 - 1,246,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,243,080 - 1,248,655 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl201,172,896 - 1,176,363 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx201,295,861 - 1,296,802 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,299,347 - 1,300,288 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,243,966 - 1,244,907 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0201,736,391 - 1,737,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl201,736,377 - 1,737,362 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0203,780,134 - 3,781,075 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,336,577 - 1,337,518 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1201,336,576 - 1,337,518 (+)NCBI
Celera201,959,220 - 1,960,161 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or12d13Ratdetection of chemical stimulus involved in sensory perception of smell involved_inIEAGO:00049841600115GO_REF:0000108GOCGO_REF:0000108
Or12d13Ratdetection of chemical stimulus involved in sensory perception of smell  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or12d13RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or12d13RatG protein-coupled receptor signaling pathway  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or12d13RatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 and InterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002
Or12d13Ratsensory perception of smell involved_inIEAUniProtKB-KW:KW-05521600115GO_REF:0000043UniProtGO_REF:0000043
Or12d13Ratsignal transduction involved_inIEAUniProtKB-KW:KW-08071600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or12d13Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Or12d13Ratmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Or12d13Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Or12d13Ratplasma membrane located_inIEAARBA:ARBA000278011600115GO_REF:0000117UniProtGO_REF:0000117
Or12d13Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or12d13RatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or12d13RatG protein-coupled receptor activity enablesIEAInterPro:IPR0002761600115GO_REF:0000002InterProGO_REF:0000002
Or12d13Ratodorant binding enablesIBAMGI:3030853 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Or12d13Ratolfactory receptor activity enablesIBAMGI:3030069 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Or12d13Ratolfactory receptor activity  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or12d13Ratolfactory receptor activity enablesIEAInterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or12d13Rattaste/olfaction phenotype  IEA 1303377 RGD 

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


Or12d13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,250,936 - 1,251,877 (+)NCBIGRCr8
mRatBN7.2201,245,689 - 1,246,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,243,080 - 1,248,655 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl201,172,896 - 1,176,363 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx201,295,861 - 1,296,802 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,299,347 - 1,300,288 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,243,966 - 1,244,907 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0201,736,391 - 1,737,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl201,736,377 - 1,737,362 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0203,780,134 - 3,781,075 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,336,577 - 1,337,518 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1201,336,576 - 1,337,518 (+)NCBI
Celera201,959,220 - 1,960,161 (+)NCBICelera
Cytogenetic Map20p12NCBI
OR12D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,417,065 - 29,418,396 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl629,414,928 - 29,418,905 (+)EnsemblGRCh38hg38GRCh38
GRCh37629,384,842 - 29,386,173 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,492,921 - 29,494,052 (+)NCBINCBI36Build 36hg18NCBI36
Celera630,990,987 - 30,992,118 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,192,098 - 29,193,229 (+)NCBIHuRef
CHM1_1629,387,035 - 29,388,166 (+)NCBICHM1_1
T2T-CHM13v2.0629,291,723 - 29,293,054 (+)NCBIT2T-CHM13v2.0
LOC100991359
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,047,517 - 44,052,134 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,010,832 - 40,015,450 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,234,746 - 29,236,387 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1629,894,107 - 29,895,451 (+)NCBIpanpan1.1PanPan1.1panPan2
LOC100155349
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.2725,740,114 - 25,741,040 (-)NCBISscrofa10.2Sscrofa10.2susScr3

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Variants in Or12d13
3 total Variants

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:68
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000047035
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat

1 to 10 of 14 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
5 2 2 35 30 22 18 3 45 38 18 1 12 22


RefSeq Transcripts NM_001001119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000047035   ⟹   ENSRNOP00000045233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl201,172,896 - 1,176,363 (-)Ensembl
Rnor_6.0 Ensembl201,736,377 - 1,737,362 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095997   ⟹   ENSRNOP00000089268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl201,243,080 - 1,248,655 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097118   ⟹   ENSRNOP00000090185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl201,244,543 - 1,248,655 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111148   ⟹   ENSRNOP00000080774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl201,243,585 - 1,248,655 (+)Ensembl
RefSeq Acc Id: NM_001001119   ⟹   NP_001001119
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,250,936 - 1,251,877 (+)NCBI
mRatBN7.2201,245,689 - 1,246,630 (+)NCBI
Rnor_6.0201,736,391 - 1,737,332 (+)NCBI
Rnor_5.0203,780,134 - 3,781,075 (+)NCBI
RGSC_v3.4201,336,577 - 1,337,518 (+)RGD
Celera201,959,220 - 1,960,161 (+)RGD
Sequence:
Protein RefSeqs NP_001001119 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000045233.2
  ENSRNOP00000080774.1
  ENSRNOP00000089268.1
  ENSRNOP00000090185.1
RefSeq Acc Id: NP_001001119   ⟸   NM_001001119
- UniProtKB: A0A8I6ABK6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000045233   ⟸   ENSRNOT00000047035
Ensembl Acc Id: ENSRNOP00000090185   ⟸   ENSRNOT00000097118
Ensembl Acc Id: ENSRNOP00000089268   ⟸   ENSRNOT00000095997
Ensembl Acc Id: ENSRNOP00000080774   ⟸   ENSRNOT00000111148
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACU7-F1-model_v2 AlphaFold D4ACU7 1-313 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 28 of 28 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-5011 BioCyc
Ensembl Genes ENSRNOG00000058776 Ensembl
  ENSRNOG00000067841 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000070408 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047035.3 UniProtKB/TrEMBL
  ENSRNOT00000095997.1 UniProtKB/TrEMBL
  ENSRNOT00000097118.1 UniProtKB/TrEMBL
  ENSRNOT00000111148.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_GPCR UniProtKB/TrEMBL
KEGG Report rno:406018 UniProtKB/TrEMBL
NCBI Gene 406018 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or12d13 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000058776 RatGTEx
  ENSRNOG00000067841 RatGTEx
  ENSRNOG00000070408 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6ABK6 ENTREZGENE, UniProtKB/TrEMBL
  D4ACU7_RAT UniProtKB/TrEMBL
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or12d13  olfactory receptor family 12 subfamily D member 13  Olr1734  olfactory receptor 1734  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1734  olfactory receptor 1734   Olr1734_predicted  olfactory receptor 1734 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1734_predicted  olfactory receptor 1734 (predicted)      Symbol and Name status set to approved 70820 APPROVED