Symbol:
Dhx38
Name:
DEAH-box helicase 38
RGD ID:
1310345
Description:
Predicted to enable 3'-5' RNA helicase activity and RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in retinitis pigmentosa 84. Orthologous to human DHX38 (DEAH-box helicase 38); PARTICIPATES IN spliceosome pathway; INTERACTS WITH bisphenol A; furan; genistein.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
DEAH (Asp-Glu-Ala-His) box polypeptide 38; LOC292007; pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
DHX38 (DEAH-box helicase 38) HGNC
Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):
Dhx38 (DEAH-box helicase 38) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Dhx38 (DEAH-box helicase 38) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
DHX38 (DEAH-box helicase 38) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
DHX38 (DEAH-box helicase 38) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Dhx38 (DEAH-box helicase 38) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
DHX38 (DEAH-box helicase 38) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
DHX38 (DEAH-box helicase 38) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Dhx38 (DEAH-box helicase 38) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
TGDS (TDP-glucose 4,6-dehydratase) HGNC
OMA
Alliance orthologs 3
Homo sapiens (human):
DHX38 (DEAH-box helicase 38)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Dhx38 (DEAH-box helicase 38)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
dhx38 (DEAH (Asp-Glu-Ala-His) box polypeptide 38)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
PRP16
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
l(1)G0007
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
mog-1
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
dhx38
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 54,422,418 - 54,439,434 (-) NCBI GRCr8 mRatBN7.2 19 37,512,893 - 37,530,135 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 37,512,891 - 37,530,140 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 44,326,164 - 44,343,154 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 44,979,492 - 44,996,482 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 47,289,199 - 47,306,189 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 42,110,291 - 42,127,540 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 42,110,327 - 42,127,542 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 52,935,420 - 52,952,669 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 39,416,281 - 39,433,530 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 39,421,164 - 39,438,151 (-) NCBI Celera 19 36,917,971 - 36,935,220 (-) NCBI Celera Cytogenetic Map 19 q12 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Dhx38 Rat (1->4)-beta-D-glucan multiple interactions ISO Dhx38 (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of DHX38 mRNA CTD PMID:36331819 Dhx38 Rat 1,2-dimethylhydrazine increases expression ISO Dhx38 (Mus musculus) 6480464 1 and 2-Dimethylhydrazine results in increased expression of DHX38 mRNA CTD PMID:22206623 Dhx38 Rat 2,2',4,4'-Tetrabromodiphenyl ether affects expression ISO Dhx38 (Mus musculus) 6480464 2 more ... CTD PMID:30294300 Dhx38 Rat 2,2',4,4'-Tetrabromodiphenyl ether decreases expression ISO DHX38 (Homo sapiens) 6480464 2 more ... CTD PMID:31675489 Dhx38 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Dhx38 (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of DHX38 mRNA CTD PMID:21570461 Dhx38 Rat 2,4,6-tribromophenol decreases expression ISO DHX38 (Homo sapiens) 6480464 2 more ... CTD PMID:31675489 Dhx38 Rat 3,3',5,5'-tetrabromobisphenol A decreases expression ISO DHX38 (Homo sapiens) 6480464 tetrabromobisphenol A results in decreased expression of DHX38 protein CTD PMID:31675489 Dhx38 Rat 3-isobutyl-1-methyl-7H-xanthine multiple interactions ISO DHX38 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of DHX38 mRNA CTD PMID:28628672 Dhx38 Rat 4,4'-sulfonyldiphenol increases expression ISO Dhx38 (Mus musculus) 6480464 bisphenol S results in increased expression of DHX38 mRNA CTD PMID:39298647 Dhx38 Rat aflatoxin B1 increases expression ISO Dhx38 (Mus musculus) 6480464 Aflatoxin B1 results in increased expression of DHX38 mRNA CTD PMID:19770486 Dhx38 Rat aflatoxin B1 decreases methylation ISO DHX38 (Homo sapiens) 6480464 Aflatoxin B1 results in decreased methylation of DHX38 gene CTD PMID:27153756 Dhx38 Rat antirheumatic drug increases expression ISO DHX38 (Homo sapiens) 6480464 Antirheumatic Agents results in increased expression of DHX38 mRNA CTD PMID:24449571 Dhx38 Rat aristolochic acid A increases expression ISO DHX38 (Homo sapiens) 6480464 aristolochic acid I results in increased expression of DHX38 mRNA CTD PMID:33212167 Dhx38 Rat benzo[a]pyrene increases methylation ISO DHX38 (Homo sapiens) 6480464 Benzo(a)pyrene results in increased methylation of DHX38 5' UTR CTD PMID:27901495 Dhx38 Rat bis(2-ethylhexyl) phthalate increases expression ISO Dhx38 (Mus musculus) 6480464 Diethylhexyl Phthalate results in increased expression of DHX38 mRNA CTD PMID:34319233 Dhx38 Rat bis(2-ethylhexyl) phthalate decreases expression ISO Dhx38 (Mus musculus) 6480464 Diethylhexyl Phthalate results in decreased expression of DHX38 mRNA CTD PMID:33754040 Dhx38 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of DHX38 mRNA CTD PMID:25181051 Dhx38 Rat bisphenol A decreases expression ISO DHX38 (Homo sapiens) 6480464 bisphenol A results in decreased expression of DHX38 protein CTD PMID:31675489 Dhx38 Rat bisphenol A decreases expression ISO Dhx38 (Mus musculus) 6480464 bisphenol A results in decreased expression of DHX38 mRNA CTD PMID:33221593 Dhx38 Rat bisphenol A increases methylation ISO Dhx38 (Mus musculus) 6480464 bisphenol A results in increased methylation of DHX38 promoter CTD PMID:27312807 Dhx38 Rat bisphenol A increases methylation EXP 6480464 bisphenol A results in increased methylation of DHX38 gene CTD PMID:28505145 Dhx38 Rat bisphenol A multiple interactions EXP 6480464 [bisphenol A co-treated with Genistein] results in increased methylation of DHX38 gene CTD PMID:28505145 Dhx38 Rat bisphenol F multiple interactions ISO DHX38 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of DHX38 mRNA CTD PMID:28628672 Dhx38 Rat clozapine decreases expression ISO DHX38 (Homo sapiens) 6480464 Clozapine results in decreased expression of DHX38 protein CTD PMID:34122009 Dhx38 Rat decabromodiphenyl ether decreases expression ISO DHX38 (Homo sapiens) 6480464 decabromobiphenyl ether results in decreased expression of DHX38 protein CTD PMID:31675489 Dhx38 Rat dexamethasone multiple interactions ISO DHX38 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of DHX38 mRNA CTD PMID:28628672 Dhx38 Rat Dibutyl phosphate affects expression ISO DHX38 (Homo sapiens) 6480464 di-n-butylphosphoric acid affects the expression of DHX38 mRNA CTD PMID:37042841 Dhx38 Rat doxorubicin decreases expression ISO DHX38 (Homo sapiens) 6480464 Doxorubicin results in decreased expression of DHX38 mRNA CTD PMID:29803840 Dhx38 Rat ethanol multiple interactions ISO Dhx38 (Mus musculus) 6480464 Ethanol affects the expression of and affects the splicing of DHX38 mRNA CTD PMID:30319688 Dhx38 Rat fenthion decreases expression ISO Dhx38 (Mus musculus) 6480464 Fenthion results in decreased expression of DHX38 mRNA CTD PMID:34813904 Dhx38 Rat FR900359 decreases phosphorylation ISO DHX38 (Homo sapiens) 6480464 FR900359 results in decreased phosphorylation of DHX38 protein CTD PMID:37730182 Dhx38 Rat furan decreases methylation EXP 6480464 furan results in decreased methylation of DHX38 gene CTD PMID:22079235 Dhx38 Rat genistein multiple interactions EXP 6480464 [bisphenol A co-treated with Genistein] results in increased methylation of DHX38 gene CTD PMID:28505145 Dhx38 Rat gentamycin increases expression EXP 6480464 Gentamicins results in increased expression of DHX38 mRNA CTD PMID:33387578 Dhx38 Rat haloperidol decreases expression ISO DHX38 (Homo sapiens) 6480464 Haloperidol results in decreased expression of DHX38 protein CTD PMID:34122009 Dhx38 Rat indometacin multiple interactions ISO DHX38 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of DHX38 mRNA CTD PMID:28628672 Dhx38 Rat ivermectin decreases expression ISO DHX38 (Homo sapiens) 6480464 Ivermectin results in decreased expression of DHX38 protein CTD PMID:32959892 Dhx38 Rat methidathion decreases expression ISO Dhx38 (Mus musculus) 6480464 methidathion results in decreased expression of DHX38 mRNA CTD PMID:34813904 Dhx38 Rat N-ethyl-N-nitrosourea increases mutagenesis ISO Dhx38 (Mus musculus) 6480464 Ethylnitrosourea results in increased mutagenesis of DHX38 mRNA CTD PMID:27776689 Dhx38 Rat paracetamol affects expression ISO Dhx38 (Mus musculus) 6480464 Acetaminophen affects the expression of DHX38 mRNA CTD PMID:17562736 Dhx38 Rat perfluorooctane-1-sulfonic acid multiple interactions ISO Dhx38 (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of DHX38 mRNA CTD PMID:36331819 Dhx38 Rat quercetin decreases phosphorylation ISO DHX38 (Homo sapiens) 6480464 Quercetin results in decreased phosphorylation of DHX38 protein CTD PMID:35688186 Dhx38 Rat resveratrol decreases expression ISO DHX38 (Homo sapiens) 6480464 resveratrol results in decreased expression of DHX38 protein CTD PMID:18089832 Dhx38 Rat resveratrol multiple interactions ISO DHX38 (Homo sapiens) 6480464 [Plant Extracts co-treated with Resveratrol] results in increased expression of DHX38 mRNA CTD PMID:23557933 Dhx38 Rat sevoflurane increases methylation ISO Dhx38 (Mus musculus) 6480464 Sevoflurane results in increased methylation of DHX38 mRNA CTD PMID:35249202 Dhx38 Rat sodium arsenite increases expression ISO DHX38 (Homo sapiens) 6480464 sodium arsenite results in increased expression of DHX38 mRNA CTD PMID:38568856 Dhx38 Rat tamoxifen decreases expression ISO DHX38 (Homo sapiens) 6480464 Tamoxifen results in decreased expression of DHX38 mRNA CTD PMID:15590111 Dhx38 Rat testosterone enanthate affects expression ISO DHX38 (Homo sapiens) 6480464 testosterone enanthate affects the expression of DHX38 mRNA CTD PMID:17440010 Dhx38 Rat thioacetamide increases expression EXP 6480464 Thioacetamide results in increased expression of DHX38 mRNA CTD PMID:23411599 and PMID:34492290 Dhx38 Rat titanium dioxide increases expression ISO Dhx38 (Mus musculus) 6480464 titanium dioxide results in increased expression of DHX38 mRNA CTD PMID:29264374 Dhx38 Rat titanium dioxide decreases methylation ISO Dhx38 (Mus musculus) 6480464 titanium dioxide results in decreased methylation of DHX38 gene CTD PMID:35295148 Dhx38 Rat trichloroethene increases methylation EXP 6480464 Trichloroethylene results in increased methylation of DHX38 gene CTD PMID:27618143 Dhx38 Rat trimellitic anhydride increases expression ISO Dhx38 (Mus musculus) 6480464 trimellitic anhydride results in increased expression of DHX38 mRNA CTD PMID:19042947 Dhx38 Rat Triptolide increases expression ISO Dhx38 (Mus musculus) 6480464 triptolide results in increased expression of DHX38 mRNA CTD PMID:32835833 Dhx38 Rat tungsten decreases expression ISO Dhx38 (Mus musculus) 6480464 Tungsten results in decreased expression of DHX38 mRNA CTD PMID:30912803 Dhx38 Rat urethane increases expression ISO DHX38 (Homo sapiens) 6480464 Urethane results in increased expression of DHX38 mRNA CTD PMID:28818685 Dhx38 Rat valproic acid affects expression ISO Dhx38 (Mus musculus) 6480464 Valproic Acid affects the expression of DHX38 mRNA CTD PMID:17292431 Dhx38 Rat valproic acid increases methylation ISO DHX38 (Homo sapiens) 6480464 Valproic Acid results in increased methylation of DHX38 gene CTD PMID:29154799
Imported Annotations - KEGG (archival)
(1->4)-beta-D-glucan (ISO) 1,2-dimethylhydrazine (ISO) 2,2',4,4'-Tetrabromodiphenyl ether (ISO) 2,3,7,8-tetrachlorodibenzodioxine (ISO) 2,4,6-tribromophenol (ISO) 3,3',5,5'-tetrabromobisphenol A (ISO) 3-isobutyl-1-methyl-7H-xanthine (ISO) 4,4'-sulfonyldiphenol (ISO) aflatoxin B1 (ISO) antirheumatic drug (ISO) aristolochic acid A (ISO) benzo[a]pyrene (ISO) bis(2-ethylhexyl) phthalate (ISO) bisphenol A (EXP,ISO) bisphenol F (ISO) clozapine (ISO) decabromodiphenyl ether (ISO) dexamethasone (ISO) Dibutyl phosphate (ISO) doxorubicin (ISO) ethanol (ISO) fenthion (ISO) FR900359 (ISO) furan (EXP) genistein (EXP) gentamycin (EXP) haloperidol (ISO) indometacin (ISO) ivermectin (ISO) methidathion (ISO) N-ethyl-N-nitrosourea (ISO) paracetamol (ISO) perfluorooctane-1-sulfonic acid (ISO) quercetin (ISO) resveratrol (ISO) sevoflurane (ISO) sodium arsenite (ISO) tamoxifen (ISO) testosterone enanthate (ISO) thioacetamide (EXP) titanium dioxide (ISO) trichloroethene (EXP) trimellitic anhydride (ISO) Triptolide (ISO) tungsten (ISO) urethane (ISO) valproic acid (ISO)
Dhx38 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 54,422,418 - 54,439,434 (-) NCBI GRCr8 mRatBN7.2 19 37,512,893 - 37,530,135 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 37,512,891 - 37,530,140 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 44,326,164 - 44,343,154 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 44,979,492 - 44,996,482 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 47,289,199 - 47,306,189 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 42,110,291 - 42,127,540 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 42,110,327 - 42,127,542 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 52,935,420 - 52,952,669 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 39,416,281 - 39,433,530 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 39,421,164 - 39,438,151 (-) NCBI Celera 19 36,917,971 - 36,935,220 (-) NCBI Celera Cytogenetic Map 19 q12 NCBI
DHX38 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 16 72,093,847 - 72,112,912 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 16 72,093,613 - 72,112,912 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 16 72,127,746 - 72,146,811 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 16 70,685,116 - 70,704,312 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 16 70,685,115 - 70,704,311 NCBI Celera 16 56,441,736 - 56,460,927 (+) NCBI Celera Cytogenetic Map 16 q22.2 NCBI HuRef 16 57,894,449 - 57,913,646 (+) NCBI HuRef CHM1_1 16 73,540,965 - 73,560,161 (+) NCBI CHM1_1 T2T-CHM13v2.0 16 77,910,161 - 77,929,227 (+) NCBI T2T-CHM13v2.0
Dhx38 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 110,274,631 - 110,292,493 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 110,274,643 - 110,292,493 (-) Ensembl GRCm39 Ensembl GRCm38 8 109,547,999 - 109,565,861 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 109,548,011 - 109,565,861 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 112,071,924 - 112,089,501 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 8 112,437,153 - 112,454,730 (-) NCBI MGSCv36 mm8 Celera 8 113,773,242 - 113,790,878 (-) NCBI Celera Cytogenetic Map 8 D3 NCBI cM Map 8 57.09 NCBI
Dhx38 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955484 4,752,834 - 4,770,843 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955484 4,752,834 - 4,770,843 (+) NCBI ChiLan1.0 ChiLan1.0
DHX38 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 18 82,020,743 - 82,037,373 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 16 87,948,348 - 87,965,097 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 16 52,872,164 - 52,891,165 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 16 71,955,021 - 71,974,199 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 16 71,955,021 - 71,974,199 (+) Ensembl panpan1.1 panPan2
DHX38 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 5 77,810,853 - 77,830,020 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 5 77,811,041 - 77,830,015 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 5 77,772,505 - 77,791,748 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 5 78,250,159 - 78,269,404 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 5 78,250,397 - 78,269,404 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 5 78,070,301 - 78,089,544 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 5 77,893,070 - 77,912,098 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 5 78,392,435 - 78,411,679 (+) NCBI UU_Cfam_GSD_1.0
Dhx38 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409349 37,758,541 - 37,777,421 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936475 21,811,463 - 21,830,577 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936475 21,811,693 - 21,830,560 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
DHX38 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 14,998,293 - 15,016,378 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 14,998,091 - 15,016,380 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 14,616,065 - 14,626,504 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
DHX38 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 5 55,243,934 - 55,264,084 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 5 55,243,911 - 55,263,706 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666047 18,032,000 - 18,051,061 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Dhx38
.
Predicted Target Of
Count of predictions: 75 Count of miRNA genes: 66 Interacting mature miRNAs: 72 Transcripts: ENSRNOT00000019810 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
61350 Bp32 Blood pressure QTL 32 0.012 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 19 20483575 57337602 Rat 61447 Tcas1 Tongue tumor susceptibility QTL 1 6.08 tongue integrity trait (VT:0010553) squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875) 19 2316121 47316121 Rat 724546 Kidm3 Kidney mass QTL 3 3.1 kidney mass (VT:0002707) calculated kidney weight (CMO:0000160) 19 29322490 57337602 Rat 7411549 Bw130 Body weight QTL 130 5 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 19 15455860 57337602 Rat 1358200 Insglur2 Insulin/glucose ratio QTL 2 4.1 blood glucose amount (VT:0000188) serum glucose level (CMO:0000543) 19 33838214 55283146 Rat 1331737 Uae29 Urinary albumin excretion QTL 29 5.5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 19 4096155 55283277 Rat 724518 Uae19 Urinary albumin excretion QTL 19 5.5 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 19 7457249 42983518 Rat 2298478 Eau8 Experimental allergic uveoretinitis QTL 8 0.0163 uvea integrity trait (VT:0010551) experimental autoimmune uveitis score (CMO:0001504) 19 17154433 57337602 Rat 8694186 Bw152 Body weight QTL 152 3.34 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 19 569374 45569374 Rat 61423 Cia14 Collagen induced arthritis QTL 14 3 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 19 10827970 43544039 Rat 1578764 Stresp19 Stress response QTL 19 3.6 0.001 blood renin amount (VT:0003349) plasma renin activity level (CMO:0000116) 19 15630201 57337602 Rat 1331788 Rf45 Renal function QTL 45 2.818 kidney blood vessel physiology trait (VT:0100012) absolute change in renal blood flow rate (CMO:0001168) 19 15605023 46559041 Rat 2317848 Alcrsp21 Alcohol response QTL 21 1.899999976158142 0.05 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 19 3204777 48204777 Rat 1354607 Gmadr1 Adrenal mass QTL 1 5.83 adrenal gland mass (VT:0010420) both adrenal glands wet weight (CMO:0000164) 19 27530207 37947399 Rat 9589102 Slep13 Serum leptin concentration QTL 13 4.63 0.001 blood leptin amount (VT:0005667) plasma leptin level (CMO:0000781) 19 569374 45569374 Rat 7247442 Uae39 Urinary albumin excretion QTL 39 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 19 2187927 46708701 Rat 1549835 Tcas7 Tongue tumor susceptibility QTL 7 0.001 tongue integrity trait (VT:0010553) squamous cell carcinoma of the head and neck tumor number (CMO:0001876) 19 24817978 39654489 Rat 1354600 Salc2 Saline consumption QTL 2 9.91 0.001 drinking behavior trait (VT:0001422) saline drink intake rate (CMO:0001627) 19 27530207 37947399 Rat 724566 Uae12 Urinary albumin excretion QTL 12 5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 19 2187927 56457239 Rat 1354633 Bw28 Body weight QTL 28 6.04 body mass (VT:0001259) body weight (CMO:0000012) 19 27530207 37947399 Rat 724565 Tcas5 Tongue tumor susceptibility QTL 5 10.04 tongue integrity trait (VT:0010553) number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) 19 9977753 39654489 Rat
RH140943
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 19 37,513,009 - 37,513,208 (-) MAPPER mRatBN7.2 Rnor_6.0 19 42,127,223 - 42,127,421 NCBI Rnor6.0 Rnor_5.0 19 52,952,352 - 52,952,550 UniSTS Rnor5.0 RGSC_v3.4 19 39,416,400 - 39,416,598 UniSTS RGSC3.4 Celera 19 36,918,090 - 36,918,288 UniSTS RH 3.4 Map 19 426.4 UniSTS Cytogenetic Map 19 q12 UniSTS
D2S2154
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 9 6,943,970 - 6,944,119 (+) MAPPER mRatBN7.2 mRatBN7.2 3 65,024,123 - 65,024,874 (+) MAPPER mRatBN7.2 mRatBN7.2 19 37,525,934 - 37,527,508 (-) MAPPER mRatBN7.2 Rnor_6.0 3 67,262,908 - 67,263,857 NCBI Rnor6.0 Rnor_6.0 19 42,112,923 - 42,114,496 NCBI Rnor6.0 Rnor_5.0 19 52,938,052 - 52,939,625 UniSTS Rnor5.0 Cytogenetic Map 19 q12 UniSTS Cytogenetic Map 10 q31 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
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Ensembl Acc Id:
ENSRNOT00000019810 ⟹ ENSRNOP00000019810
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 19 37,512,891 - 37,530,140 (-) Ensembl Rnor_6.0 Ensembl 19 42,110,327 - 42,127,542 (+) Ensembl
RefSeq Acc Id:
NM_001399194 ⟹ NP_001386123
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 19 54,422,418 - 54,439,423 (-) NCBI mRatBN7.2 19 37,512,893 - 37,529,898 (-) NCBI
RefSeq Acc Id:
XM_039097631 ⟹ XP_038953559
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 19 54,427,111 - 54,439,434 (-) NCBI mRatBN7.2 19 37,517,577 - 37,530,135 (-) NCBI
Ensembl Acc Id:
ENSRNOP00000019810 ⟸ ENSRNOT00000019810
RefSeq Acc Id:
XP_038953559 ⟸ XM_039097631
- Peptide Label:
isoform X1
RefSeq Acc Id:
NP_001386123 ⟸ NM_001399194
- UniProtKB:
A6IZ19 (UniProtKB/TrEMBL), D4A321 (UniProtKB/TrEMBL)
RGD ID: 13701136 Promoter ID: EPDNEW_R11660 Type: initiation region Name: Dhx38_1 Description: DEAH-box helicase 38 SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 19 42,110,407 - 42,110,467 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2016-01-13
Dhx38
DEAH-box helicase 38
Dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2008-04-30
Dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38
Dhx38_predicted
DEAH (Asp-Glu-Ala-His) box polypeptide 38 (predicted)
'predicted' is removed
2292626 APPROVED
2005-01-12
Dhx38_predicted
DEAH (Asp-Glu-Ala-His) box polypeptide 38 (predicted)
Symbol and Name status set to approved
70820 APPROVED
