Ankrd12 (ankyrin repeat domain 12) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ankrd12 (ankyrin repeat domain 12) Rattus norvegicus
Analyze
Symbol: Ankrd12
Name: ankyrin repeat domain 12
RGD ID: 1310118
Description: Predicted to be located in cytosol. Predicted to be active in nucleoplasm. Orthologous to human ANKRD12 (ankyrin repeat domain 12); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ankyrin repeat domain-containing protein 12; ankyrin repeat domain-containing protein 12-like; LOC100910483; LOC316775
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89113,030,127 - 113,134,816 (-)NCBIGRCr8
mRatBN7.29105,583,273 - 105,687,957 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,584,065 - 105,687,911 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9113,992,525 - 114,096,477 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09119,102,675 - 119,206,534 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,458,373 - 117,562,328 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,605,683 - 113,682,482 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,605,657 - 113,682,482 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09113,137,358 - 113,214,157 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,746,476 - 104,823,263 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19104,957,374 - 105,059,102 (-)NCBI
Celera9102,959,000 - 103,062,384 (-)NCBICelera
Cytogenetic Map9q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroprene  (EXP)
choline  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clorgyline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenzo[a,l]pyrene  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
ferric oxide  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N,N-diethyl-m-toluamide  (EXP)
niclosamide  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
PCB138  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
succimer  (ISO)
sulfadimethoxine  (EXP)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation

Genomics

Comparative Map Data
Ankrd12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89113,030,127 - 113,134,816 (-)NCBIGRCr8
mRatBN7.29105,583,273 - 105,687,957 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,584,065 - 105,687,911 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9113,992,525 - 114,096,477 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09119,102,675 - 119,206,534 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,458,373 - 117,562,328 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,605,683 - 113,682,482 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,605,657 - 113,682,482 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09113,137,358 - 113,214,157 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,746,476 - 104,823,263 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19104,957,374 - 105,059,102 (-)NCBI
Celera9102,959,000 - 103,062,384 (-)NCBICelera
Cytogenetic Map9q37NCBI
ANKRD12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,136,781 - 9,285,985 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,136,228 - 9,285,985 (+)EnsemblGRCh38hg38GRCh38
GRCh37189,136,779 - 9,285,983 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,126,758 - 9,275,206 (+)NCBINCBI36Build 36hg18NCBI36
Build 34189,126,800 - 9,273,757NCBI
Celera189,066,843 - 9,169,731 (+)NCBICelera
Cytogenetic Map18p11.22NCBI
HuRef189,100,497 - 9,249,674 (+)NCBIHuRef
CHM1_1189,136,923 - 9,285,821 (+)NCBICHM1_1
T2T-CHM13v2.0189,299,170 - 9,449,185 (+)NCBIT2T-CHM13v2.0
Ankrd12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,272,698 - 66,386,242 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1766,272,693 - 66,384,084 (-)EnsemblGRCm39 Ensembl
GRCm381765,965,703 - 66,078,804 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1765,965,698 - 66,077,089 (-)EnsemblGRCm38mm10GRCm38
MGSCv371766,316,841 - 66,426,386 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361765,867,044 - 65,976,589 (-)NCBIMGSCv36mm8
Celera1770,276,265 - 70,385,476 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1735.26NCBI
Ankrd12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554022,705,261 - 2,799,682 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554022,705,252 - 2,799,682 (-)NCBIChiLan1.0ChiLan1.0
ANKRD12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21729,166,811 - 29,316,336 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11814,859,406 - 15,009,644 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0185,002,212 - 5,153,112 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1187,284,643 - 7,430,365 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,287,287 - 7,385,041 (-)Ensemblpanpan1.1panPan2
ANKRD12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,188,058 - 75,311,825 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,219,779 - 75,307,577 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha774,578,068 - 74,700,985 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0775,238,666 - 75,361,675 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl775,238,683 - 75,361,675 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1774,938,638 - 75,061,564 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0774,959,407 - 75,082,736 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0775,264,634 - 75,387,980 (+)NCBIUU_Cfam_GSD_1.0
Ankrd12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494472,259,186 - 72,382,477 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366702,775,242 - 2,898,408 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366702,775,222 - 2,898,418 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl698,697,174 - 98,815,336 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1698,697,207 - 98,814,727 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2692,033,574 - 92,151,304 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,055,330 - 68,189,543 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1868,121,005 - 68,187,751 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605043,004,981 - 43,139,496 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477017,952,777 - 18,044,121 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477017,953,053 - 18,043,778 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ankrd12
382 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:309
Count of miRNA genes:209
Interacting mature miRNAs:244
Transcripts:ENSRNOT00000017613
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat

Markers in Region
RH137497  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,584,673 - 105,584,857 (-)MAPPERmRatBN7.2
Rnor_6.09113,681,690 - 113,681,873NCBIRnor6.0
Rnor_5.09113,213,365 - 113,213,548UniSTSRnor5.0
RGSC_v3.49104,747,085 - 104,747,268UniSTSRGSC3.4
Celera9102,959,609 - 102,959,792UniSTS
Cytogenetic Map9q37UniSTS
RH141615  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,585,617 - 105,585,817 (-)MAPPERmRatBN7.2
Rnor_6.09113,680,730 - 113,680,929NCBIRnor6.0
Rnor_5.09113,212,405 - 113,212,604UniSTSRnor5.0
RGSC_v3.49104,748,029 - 104,748,228UniSTSRGSC3.4
Celera9102,960,553 - 102,960,752UniSTS
Cytogenetic Map9q37UniSTS
RH144395  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,585,619 - 105,585,865 (-)MAPPERmRatBN7.2
Rnor_6.09113,680,682 - 113,680,927NCBIRnor6.0
Rnor_5.09113,212,357 - 113,212,602UniSTSRnor5.0
RGSC_v3.49104,748,031 - 104,748,276UniSTSRGSC3.4
Celera9102,960,555 - 102,960,800UniSTS
Cytogenetic Map9q37UniSTS
AA944970  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,585,246 - 105,585,349 (-)MAPPERmRatBN7.2
Rnor_6.09113,681,198 - 113,681,300NCBIRnor6.0
Rnor_5.09113,212,873 - 113,212,975UniSTSRnor5.0
RGSC_v3.49104,747,658 - 104,747,760UniSTSRGSC3.4
Celera9102,960,182 - 102,960,284UniSTS
Cytogenetic Map9q37UniSTS
ksks359  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0514,330,766 - 14,330,809NCBIRnor5.0
Rnor_5.01677,400,900 - 77,402,298NCBIRnor5.0
RGSC_v3.41677,605,647 - 77,607,044UniSTSRGSC3.4
RGSC_v3.459,415,140 - 9,415,182UniSTSRGSC3.4
Celera1670,660,028 - 70,661,425UniSTS
Celera59,345,017 - 9,345,059UniSTS
Cytogenetic Map16q12.5UniSTS
Cytogenetic Map9q37UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 14 19 64 10 16 11
Low 43 43 41 41 8 11 10 25 25 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017253   ⟹   ENSRNOP00000017253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9113,814,537 - 113,846,053 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000017613   ⟹   ENSRNOP00000017613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9105,584,065 - 105,687,911 (-)Ensembl
Rnor_6.0 Ensembl9113,605,657 - 113,682,482 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096339   ⟹   ENSRNOP00000079645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9105,584,065 - 105,687,911 (-)Ensembl
RefSeq Acc Id: NM_001108238   ⟹   NP_001101708
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89113,030,919 - 113,134,762 (-)NCBI
mRatBN7.29105,584,065 - 105,687,911 (-)NCBI
Rnor_6.09113,605,683 - 113,682,482 (+)NCBI
Rnor_5.09113,137,358 - 113,214,157 (+)NCBI
RGSC_v3.49104,746,476 - 104,823,263 (-)RGD
Celera9102,959,000 - 103,062,384 (-)RGD
Sequence:
RefSeq Acc Id: XM_039083801   ⟹   XP_038939729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89113,030,127 - 113,134,311 (-)NCBI
mRatBN7.29105,583,273 - 105,687,451 (-)NCBI
RefSeq Acc Id: XM_039083802   ⟹   XP_038939730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89113,030,127 - 113,134,637 (-)NCBI
mRatBN7.29105,583,273 - 105,687,803 (-)NCBI
RefSeq Acc Id: XM_039083803   ⟹   XP_038939731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89113,030,127 - 113,134,816 (-)NCBI
mRatBN7.29105,583,273 - 105,687,957 (-)NCBI
RefSeq Acc Id: XM_063267347   ⟹   XP_063123417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89113,030,127 - 113,134,414 (-)NCBI
RefSeq Acc Id: XM_063267348   ⟹   XP_063123418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89113,030,127 - 113,134,613 (-)NCBI
RefSeq Acc Id: XM_063267349   ⟹   XP_063123419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89113,030,127 - 113,134,816 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001101708   ⟸   NM_001108238
- UniProtKB: D3ZCH1 (UniProtKB/TrEMBL),   A6JRD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017613   ⟸   ENSRNOT00000017613
RefSeq Acc Id: XP_038939731   ⟸   XM_039083803
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZN78 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939730   ⟸   XM_039083802
- Peptide Label: isoform X1
- UniProtKB: D3ZCH1 (UniProtKB/TrEMBL),   A6JRD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939729   ⟸   XM_039083801
- Peptide Label: isoform X1
- UniProtKB: D3ZCH1 (UniProtKB/TrEMBL),   A6JRD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000017253   ⟸   ENSRNOT00000017253
RefSeq Acc Id: ENSRNOP00000079645   ⟸   ENSRNOT00000096339
RefSeq Acc Id: XP_063123419   ⟸   XM_063267349
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063123418   ⟸   XM_063267348
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZN78 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123417   ⟸   XM_063267347
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZN78 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZGR5-F1-model_v2 AlphaFold D3ZGR5 1-328 view protein structure
AF-D3ZCH1-F1-model_v2 AlphaFold D3ZCH1 1-2047 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310118 AgrOrtholog
BioCyc Gene G2FUF-26474 BioCyc
Ensembl Genes ENSRNOG00000012733 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000048545 Ensembl
Ensembl Transcript ENSRNOT00000017613 ENTREZGENE
  ENSRNOT00000017613.7 UniProtKB/TrEMBL
  ENSRNOT00000096339.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
KEGG Report rno:316775 UniProtKB/TrEMBL
NCBI Gene 316775 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12 UniProtKB/TrEMBL
  ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
PharmGKB ANKRD12 RGD
PhenoGen Ankrd12 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012733 RatGTEx
  ENSRNOG00000048545 RatGTEx
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
UniProt A0A8I5ZN78 ENTREZGENE, UniProtKB/TrEMBL
  A6JRD8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZCH1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ankrd12  ankyrin repeat domain 12  LOC100910483  ankyrin repeat domain-containing protein 12-like  Data merged from RGD:6498319 737654 PROVISIONAL
2012-07-05 LOC100910483  ankyrin repeat domain-containing protein 12-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Ankrd12  ankyrin repeat domain 12   Ankrd12_predicted  ankyrin repeat domain 12 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ankrd12_predicted  ankyrin repeat domain 12 (predicted)      Symbol and Name status set to approved 70820 APPROVED