Nsun6 (NOP2/Sun RNA methyltransferase 6) - Rat Genome Database

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Gene: Nsun6 (NOP2/Sun RNA methyltransferase 6) Rattus norvegicus
Analyze
Symbol: Nsun6
Name: NOP2/Sun RNA methyltransferase 6
RGD ID: 1309535
Description: Predicted to enable tRNA (cytidine-5-)-methyltransferase activity and tRNA binding activity. Predicted to be involved in tRNA C5-cytosine methylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 82. Orthologous to human NSUN6 (NOP2/Sun RNA methyltransferase 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC307148; NOL1/NOP2/Sun domain family, member 6; NOP2/Sun domain family, member 6; NOP2/Sun RNA methyltransferase family member 6; Nopd1; nucleolar protein (NOL1/NOP2/sun) and PUA domains 1; putative methyltransferase NSUN6; tRNA (cytosine(72)-C(5))-methyltransferase NSUN6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81782,820,938 - 82,864,140 (-)NCBIGRCr8
mRatBN7.21777,912,374 - 77,955,694 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1777,912,377 - 77,950,006 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1781,362,773 - 81,400,399 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01785,198,207 - 85,235,841 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01779,246,103 - 79,283,733 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01782,020,316 - 82,060,533 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1782,022,490 - 82,060,123 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01783,762,303 - 83,802,132 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41789,082,141 - 89,120,005 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11789,092,973 - 89,133,621 (-)NCBI
Celera1777,243,863 - 77,281,371 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nsun6Ratautosomal recessive intellectual developmental disorder 82  ISONSUN6 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual developmental disorder and autosomal recessive 82ClinVarPMID:37226891
Nsun6Ratcardiomyopathy  ISONSUN6 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:23861362 more ...
Nsun6Rathypoparathyroidism-deafness-renal disease syndrome  ISONSUN6 (Homo sapiens)8554872ClinVar Annotator: match by term: Hypoparathyroidism more ...ClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nsun6RatBreast Neoplasms  ISONSUN6 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28114269
Nsun6RatNeoplasm Metastasis  ISONSUN6 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28114269
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nsun6Ratautosomal recessive intellectual developmental disorder 82  ISONSUN6 (Homo sapiens)7240710 OMIM 

1 to 20 of 54 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nsun6Rat(-)-epigallocatechin 3-gallate multiple interactionsISONSUN6 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of NSUN6 mRNACTDPMID:22079256
Nsun6Rat1,2-dimethylhydrazine decreases expressionISONsun6 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of NSUN6 mRNACTDPMID:22206623
Nsun6Rat17alpha-ethynylestradiol affects expressionISONsun6 (Mus musculus)6480464Ethinyl Estradiol affects the expression of NSUN6 mRNACTDPMID:17555576
Nsun6Rat17alpha-ethynylestradiol multiple interactionsISONsun6 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NSUN6 mRNACTDPMID:17942748
Nsun6Rat17alpha-ethynylestradiol increases expressionISONsun6 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of NSUN6 mRNACTDPMID:17942748
Nsun6Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISONsun6 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NSUN6 mRNACTDPMID:17942748
Nsun6Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of NSUN6 mRNACTDPMID:33387578
Nsun6Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISONsun6 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of NSUN6 mRNACTDPMID:21570461
Nsun6Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISONSUN6 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of NSUN6 mRNACTDPMID:22298810
Nsun6Rat2-palmitoylglycerol increases expressionISONSUN6 (Homo sapiens)64804642-palmitoylglycerol results in increased expression of NSUN6 mRNACTDPMID:37199045
Nsun6Rat3,4-methylenedioxymethamphetamine decreases expressionISONsun6 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of NSUN6 mRNACTDPMID:26251327
Nsun6Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of NSUN6 mRNACTDPMID:24780913
Nsun6Rataflatoxin B1 increases expressionISONsun6 (Mus musculus)6480464Aflatoxin B1 results in increased expression of NSUN6 mRNACTDPMID:19770486
Nsun6Rataflatoxin B1 decreases expressionISONSUN6 (Homo sapiens)6480464Aflatoxin B1 results in decreased expression of NSUN6 mRNACTDPMID:32234424
Nsun6Rataflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of NSUN6 mRNACTDPMID:33354967
Nsun6Ratall-trans-retinoic acid decreases expressionISONSUN6 (Homo sapiens)6480464Tretinoin results in decreased expression of NSUN6 mRNACTDPMID:33167477
Nsun6Ratatrazine decreases expressionISONSUN6 (Homo sapiens)6480464Atrazine results in decreased expression of NSUN6 mRNACTDPMID:22378314
Nsun6Ratbenzo[a]pyrene decreases expressionISONSUN6 (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of NSUN6 mRNACTDPMID:32234424
Nsun6Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of NSUN6 mRNACTDPMID:34947998
Nsun6Ratcadmium atom multiple interactionsISONSUN6 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of NSUN6 mRNACTDPMID:35301059

1 to 20 of 54 rows

Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nsun6Ratcytoplasm located_inISONSUN6 (Homo sapiens)1624291 PMID:26160102RGDPMID:26160102

Molecular Function

  


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:26160102   PMID:27703015   PMID:28531330  



Nsun6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81782,820,938 - 82,864,140 (-)NCBIGRCr8
mRatBN7.21777,912,374 - 77,955,694 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1777,912,377 - 77,950,006 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1781,362,773 - 81,400,399 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01785,198,207 - 85,235,841 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01779,246,103 - 79,283,733 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01782,020,316 - 82,060,533 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1782,022,490 - 82,060,123 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01783,762,303 - 83,802,132 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41789,082,141 - 89,120,005 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11789,092,973 - 89,133,621 (-)NCBI
Celera1777,243,863 - 77,281,371 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
NSUN6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381018,545,561 - 18,659,327 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1018,545,561 - 18,659,285 (-)EnsemblGRCh38hg38GRCh38
GRCh371018,834,490 - 18,948,167 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361018,874,496 - 18,980,556 (-)NCBINCBI36Build 36hg18NCBI36
Build 341018,874,496 - 18,980,556NCBI
Celera1018,521,149 - 18,626,065 (-)NCBICelera
Cytogenetic Map10p12.31NCBI
HuRef1018,499,194 - 18,601,001 (-)NCBIHuRef
CHM1_11018,834,237 - 18,940,666 (-)NCBICHM1_1
T2T-CHM13v2.01018,531,853 - 18,678,450 (-)NCBIT2T-CHM13v2.0
Nsun6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39214,995,255 - 15,059,683 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl214,999,942 - 15,059,880 (-)EnsemblGRCm39 Ensembl
GRCm38214,990,444 - 15,055,144 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl214,995,131 - 15,055,069 (-)EnsemblGRCm38mm10GRCm38
MGSCv37214,916,758 - 14,976,499 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36214,912,885 - 14,967,034 (-)NCBIMGSCv36mm8
Celera214,896,553 - 14,956,518 (-)NCBICelera
Cytogenetic Map2A2NCBI
cM Map210.94NCBI
Nsun6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554299,594,958 - 9,639,614 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554299,594,964 - 9,639,614 (+)NCBIChiLan1.0ChiLan1.0
NSUN6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2831,357,321 - 31,503,780 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11031,362,641 - 31,509,101 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01018,864,484 - 18,978,297 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11019,196,248 - 19,304,089 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1019,199,642 - 19,304,089 (-)Ensemblpanpan1.1panPan2
NSUN6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1218,477,150 - 18,534,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl218,477,211 - 18,534,710 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha215,577,663 - 15,635,061 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0218,768,581 - 18,826,397 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl218,768,608 - 18,826,397 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1215,967,679 - 16,025,183 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0216,803,798 - 16,861,307 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0217,423,182 - 17,480,898 (+)NCBIUU_Cfam_GSD_1.0
Nsun6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934418,973,762 - 19,056,564 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365208,909,480 - 8,950,925 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365208,909,509 - 8,950,960 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100524391
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1044,891,257 - 44,958,004 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11044,884,179 - 44,958,024 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21049,623,237 - 49,696,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NSUN6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1918,475,421 - 18,569,988 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl918,475,802 - 18,568,620 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605124,130,556 - 24,226,265 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nsun6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247969,438,338 - 9,501,296 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247969,433,005 - 9,539,757 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Nsun6
205 total Variants

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:48
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000025046
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)177177462182479847Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)176570358081153923Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat

1 to 10 of 24 rows
AI410582  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21777,912,448 - 77,912,542 (+)MAPPERmRatBN7.2
Rnor_6.01782,022,562 - 82,022,655NCBIRnor6.0
Rnor_5.01783,764,549 - 83,764,642UniSTSRnor5.0
RGSC_v3.41789,082,213 - 89,082,306UniSTSRGSC3.4
Celera1777,243,935 - 77,244,028UniSTS
RH 3.4 Map17792.8UniSTS
Cytogenetic Map17q12.3UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000025046   ⟹   ENSRNOP00000025046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1777,912,377 - 77,950,006 (-)Ensembl
Rnor_6.0 Ensembl1782,022,490 - 82,060,123 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102323   ⟹   ENSRNOP00000094478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1777,936,054 - 77,949,985 (-)Ensembl
RefSeq Acc Id: NM_001107367   ⟹   NP_001100837
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81782,820,941 - 82,858,539 (-)NCBI
mRatBN7.21777,912,377 - 77,949,975 (-)NCBI
Rnor_6.01782,022,490 - 82,060,123 (-)NCBI
Rnor_5.01783,762,303 - 83,802,132 (-)NCBI
RGSC_v3.41789,082,141 - 89,120,005 (-)RGD
Celera1777,243,863 - 77,281,371 (-)RGD
Sequence:
RefSeq Acc Id: XM_008771869   ⟹   XP_008770091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81782,820,938 - 82,859,509 (-)NCBI
mRatBN7.21777,912,374 - 77,950,893 (-)NCBI
Rnor_6.01782,020,316 - 82,060,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600572   ⟹   XP_017456061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81782,820,938 - 82,859,509 (-)NCBI
mRatBN7.21777,912,374 - 77,950,893 (-)NCBI
Rnor_6.01782,020,316 - 82,060,533 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095798   ⟹   XP_038951726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81782,820,938 - 82,859,509 (-)NCBI
mRatBN7.21777,912,374 - 77,950,895 (-)NCBI
RefSeq Acc Id: XM_039095802   ⟹   XP_038951730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81782,820,938 - 82,847,508 (-)NCBI
mRatBN7.21777,912,374 - 77,950,886 (-)NCBI
RefSeq Acc Id: XM_039095804   ⟹   XP_038951732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81782,828,488 - 82,859,509 (-)NCBI
mRatBN7.21777,919,924 - 77,950,907 (-)NCBI
RefSeq Acc Id: XM_063276497   ⟹   XP_063132567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81782,820,938 - 82,864,140 (-)NCBI
RefSeq Acc Id: XM_063276498   ⟹   XP_063132568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81782,820,938 - 82,864,140 (-)NCBI
RefSeq Acc Id: XM_063276499   ⟹   XP_063132569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81782,820,938 - 82,859,509 (-)NCBI
1 to 5 of 11 rows
1 to 5 of 11 rows
RefSeq Acc Id: NP_001100837   ⟸   NM_001107367
- UniProtKB: B1WC69 (UniProtKB/TrEMBL),   F7ENF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770091   ⟸   XM_008771869
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456061   ⟸   XM_017600572
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000025046   ⟸   ENSRNOT00000025046
RefSeq Acc Id: XP_038951726   ⟸   XM_039095798
- Peptide Label: isoform X3
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC69-F1-model_v2 AlphaFold B1WC69 1-476 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 33 of 33 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-8593 BioCyc
Ensembl Genes ENSRNOG00000018520 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025046.6 UniProtKB/TrEMBL
  ENSRNOT00000102323.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.130.10 UniProtKB/TrEMBL
  3.40.50.150 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9099401 IMAGE-MGC_LOAD
InterPro Fmu/NOL1/Nop2p UniProtKB/TrEMBL
  Fmu/NOL1/Nop2p_CS UniProtKB/TrEMBL
  MeTrfase_RsmB-F_NOP2_cat UniProtKB/TrEMBL
  PUA UniProtKB/TrEMBL
  PUA-like UniProtKB/TrEMBL
  PUA_sf UniProtKB/TrEMBL
  RCMT UniProtKB/TrEMBL
  SAM-dependent_MTases-like UniProtKB/TrEMBL
KEGG Report rno:307148 UniProtKB/TrEMBL
MGC_CLONE MGC:187910 IMAGE-MGC_LOAD
NCBI Gene 307148 ENTREZGENE
PANTHER PTHR22807 UniProtKB/TrEMBL
  TRNA (CYTOSINE(72)-C(5))-METHYLTRANSFERASE NSUN6 UniProtKB/TrEMBL
Pfam Nol1_Nop2_Fmu UniProtKB/TrEMBL
PhenoGen Nsun6 PhenoGen
PRINTS RCMTFAMILY UniProtKB/TrEMBL
PROSITE NOL1_NOP2_SUN UniProtKB/TrEMBL
  PUA UniProtKB/TrEMBL
  SAM_MT_RSMB_NOP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018520 RatGTEx
SMART PUA UniProtKB/TrEMBL
Superfamily-SCOP PUA-like UniProtKB/TrEMBL
  SSF53335 UniProtKB/TrEMBL
UniProt A0A8I6AHU8_RAT UniProtKB/TrEMBL
  B1WC69 ENTREZGENE, UniProtKB/TrEMBL
  F7ENF9 ENTREZGENE, UniProtKB/TrEMBL
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Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-04 Nsun6  NOP2/Sun RNA methyltransferase 6  Nsun6  NOP2/Sun RNA methyltransferase family member 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-30 Nsun6  NOP2/Sun RNA methyltransferase family member 6  Nsun6  NOP2/Sun domain family, member 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-02 Nsun6  NOP2/Sun domain family, member 6  Nsun6  NOL1/NOP2/Sun domain family, member 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Nsun6  NOL1/NOP2/Sun domain family, member 6  Nsun6_predicted  NOL1/NOP2/Sun domain family, member 6 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Nsun6_predicted  NOL1/NOP2/Sun domain family, member 6 (predicted)  Nopd1_predicted  nucleolar protein (NOL1/NOP2/sun) and PUA domains 1 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Nopd1_predicted  nucleolar protein (NOL1/NOP2/sun) and PUA domains 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED