Tcf25 (transcription factor 25) - Rat Genome Database

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Gene: Tcf25 (transcription factor 25) Rattus norvegicus
Analyze
Symbol: Tcf25
Name: transcription factor 25
RGD ID: 1309054
Description: Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; regulation of protein K48-linked ubiquitination; and rescue of stalled ribosome. Predicted to be located in cytoplasm. Predicted to be part of RQC complex. Predicted to be active in nucleus. Orthologous to human TCF25 (transcription factor 25); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC292082; RGD1309054; ribosome quality control complex subunit TCF25; similar to FKSG26 protein; transcription factor 25 (basic helix-loop-helix)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,323,789 - 68,358,226 (+)NCBIGRCr8
mRatBN7.21951,415,341 - 51,449,725 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,415,543 - 51,449,723 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,210,104 - 58,243,915 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,890,618 - 58,921,401 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,108,705 - 61,142,516 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,178,905 - 56,213,299 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,179,111 - 56,213,310 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,889,815 - 66,924,422 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,700,698 - 53,732,930 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11953,705,581 - 53,737,793 (+)NCBI
Celera1950,650,902 - 50,682,264 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (ISO)
RQC complex  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12107429   PMID:16574069  


Genomics

Comparative Map Data
Tcf25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,323,789 - 68,358,226 (+)NCBIGRCr8
mRatBN7.21951,415,341 - 51,449,725 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,415,543 - 51,449,723 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,210,104 - 58,243,915 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,890,618 - 58,921,401 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,108,705 - 61,142,516 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,178,905 - 56,213,299 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,179,111 - 56,213,310 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,889,815 - 66,924,422 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,700,698 - 53,732,930 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11953,705,581 - 53,737,793 (+)NCBI
Celera1950,650,902 - 50,682,264 (+)NCBICelera
Cytogenetic Map19q12NCBI
TCF25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,873,592 - 89,911,379 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,873,570 - 89,913,627 (+)EnsemblGRCh38hg38GRCh38
GRCh371689,940,000 - 89,977,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361688,467,521 - 88,505,287 (+)NCBINCBI36Build 36hg18NCBI36
Celera1675,005,365 - 75,042,884 (+)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1675,633,713 - 75,670,835 (+)NCBIHuRef
CHM1_11691,351,261 - 91,389,910 (+)NCBICHM1_1
T2T-CHM13v2.01695,958,631 - 95,997,624 (+)NCBIT2T-CHM13v2.0
Tcf25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,097,511 - 124,130,913 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,100,492 - 124,130,574 (+)EnsemblGRCm39 Ensembl
GRCm388123,370,772 - 123,404,174 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,373,753 - 123,403,835 (+)EnsemblGRCm38mm10GRCm38
MGSCv378125,897,653 - 125,928,073 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,259,843 - 126,290,263 (+)NCBIMGSCv36mm8
Celera8127,615,925 - 127,646,697 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.1NCBI
Tcf25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555413,362,666 - 3,387,854 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555413,362,665 - 3,387,506 (+)NCBIChiLan1.0ChiLan1.0
TCF25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21899,726,126 - 99,765,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116105,613,583 - 105,652,905 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01670,636,413 - 70,675,841 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11690,302,195 - 90,340,194 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1690,298,175 - 90,340,048 (+)Ensemblpanpan1.1panPan2
TCF25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,697,627 - 63,729,780 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,681,752 - 63,729,684 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha563,711,734 - 63,742,768 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0563,927,821 - 63,957,965 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl563,924,849 - 63,958,007 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1563,947,036 - 63,978,065 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,784,575 - 63,815,793 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0564,190,933 - 64,221,930 (-)NCBIUU_Cfam_GSD_1.0
Tcf25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,448,975 - 24,479,415 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936641202,624 - 232,962 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936641202,522 - 232,962 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCF25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6183,451 - 208,903 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16186,068 - 208,841 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26231,361 - 282,700 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCF25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1575,205,506 - 75,235,290 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl575,205,504 - 75,235,777 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666047186,117 - 220,334 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcf25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746137,926 - 162,442 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746137,926 - 162,467 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tcf25
321 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:214
Count of miRNA genes:131
Interacting mature miRNAs:143
Transcripts:ENSRNOT00000046155, ENSRNOT00000066223
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat

Markers in Region
BI283745  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,449,353 - 51,449,503 (+)MAPPERmRatBN7.2
Rnor_6.01956,212,930 - 56,213,079NCBIRnor6.0
Rnor_5.01966,924,051 - 66,924,200UniSTSRnor5.0
RGSC_v3.41953,734,823 - 53,734,972UniSTSRGSC3.4
Celera1950,681,895 - 50,682,044UniSTS
RH 3.4 Map19717.1UniSTS
Cytogenetic Map19q12UniSTS
D8Ertd325e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,449,455 - 51,449,665 (+)MAPPERmRatBN7.2
Rnor_6.01956,213,032 - 56,213,241NCBIRnor6.0
Rnor_5.01966,924,153 - 66,924,362UniSTSRnor5.0
RGSC_v3.41953,734,925 - 53,735,134UniSTSRGSC3.4
Celera1950,681,997 - 50,682,206UniSTS
Cytogenetic Map19q12UniSTS
RH138669  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,446,920 - 51,447,057 (+)MAPPERmRatBN7.2
Rnor_6.01956,210,498 - 56,210,634NCBIRnor6.0
Rnor_5.01966,921,619 - 66,921,755UniSTSRnor5.0
RGSC_v3.41953,732,391 - 53,732,527UniSTSRGSC3.4
Celera1950,679,463 - 50,679,599UniSTS
RH 3.4 Map19716.6UniSTS
Cytogenetic Map19q12UniSTS
RH139302  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,432,296 - 51,432,430 (+)MAPPERmRatBN7.2
Rnor_6.01956,195,875 - 56,196,008NCBIRnor6.0
Rnor_5.01966,906,770 - 66,906,903UniSTSRnor5.0
RGSC_v3.41953,717,661 - 53,717,794UniSTSRGSC3.4
Celera1950,665,389 - 50,665,522UniSTS
RH 3.4 Map19715.2UniSTS
Cytogenetic Map19q12UniSTS
AI407691  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,448,020 - 51,448,217 (+)MAPPERmRatBN7.2
Rnor_6.01956,211,597 - 56,211,793NCBIRnor6.0
Rnor_5.01966,922,718 - 66,922,914UniSTSRnor5.0
RGSC_v3.41953,733,490 - 53,733,686UniSTSRGSC3.4
Celera1950,680,562 - 50,680,758UniSTS
RH 3.4 Map19711.41UniSTS
Cytogenetic Map19q12UniSTS
MARC_52622-52623:1146767377:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,434,863 - 51,435,155 (+)MAPPERmRatBN7.2
Rnor_6.01956,198,441 - 56,198,732NCBIRnor6.0
Rnor_5.01966,909,336 - 66,909,627UniSTSRnor5.0
RGSC_v3.41953,720,227 - 53,720,518UniSTSRGSC3.4
Celera1950,667,955 - 50,668,246UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001079503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000046155   ⟹   ENSRNOP00000048508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,415,543 - 51,449,700 (+)Ensembl
Rnor_6.0 Ensembl1956,179,111 - 56,213,310 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096732   ⟹   ENSRNOP00000088994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,415,543 - 51,447,412 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099662   ⟹   ENSRNOP00000096680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,415,577 - 51,446,862 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105294   ⟹   ENSRNOP00000096792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,415,595 - 51,449,716 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107695   ⟹   ENSRNOP00000097466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,415,647 - 51,449,720 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111547   ⟹   ENSRNOP00000087778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,415,626 - 51,449,723 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112610   ⟹   ENSRNOP00000080994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,415,623 - 51,449,309 (+)Ensembl
RefSeq Acc Id: NM_001400950   ⟹   NP_001387879
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,324,102 - 68,358,226 (+)NCBI
mRatBN7.21951,415,595 - 51,449,723 (+)NCBI
RefSeq Acc Id: NM_001400951   ⟹   NP_001387880
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,324,102 - 68,358,226 (+)NCBI
mRatBN7.21951,415,595 - 51,449,723 (+)NCBI
RefSeq Acc Id: NM_001400952   ⟹   NP_001387881
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,324,102 - 68,358,226 (+)NCBI
mRatBN7.21951,415,595 - 51,449,723 (+)NCBI
RefSeq Acc Id: XM_006255792   ⟹   XP_006255854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,323,795 - 68,358,226 (+)NCBI
mRatBN7.21951,415,341 - 51,449,725 (+)NCBI
Rnor_6.01956,178,908 - 56,213,299 (+)NCBI
Rnor_5.01966,889,815 - 66,924,422 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255793   ⟹   XP_006255855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,323,801 - 68,358,226 (+)NCBI
mRatBN7.21951,415,341 - 51,449,725 (+)NCBI
Rnor_6.01956,178,905 - 56,213,299 (+)NCBI
Rnor_5.01966,889,815 - 66,924,422 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255794   ⟹   XP_006255856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,323,789 - 68,358,226 (+)NCBI
mRatBN7.21951,415,341 - 51,449,725 (+)NCBI
Rnor_6.01956,178,910 - 56,213,299 (+)NCBI
Rnor_5.01966,889,815 - 66,924,422 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063277952   ⟹   XP_063134022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,323,801 - 68,358,226 (+)NCBI
RefSeq Acc Id: XM_063277953   ⟹   XP_063134023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,323,801 - 68,358,226 (+)NCBI
RefSeq Acc Id: XM_063277954   ⟹   XP_063134024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,323,801 - 68,358,226 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006255854   ⟸   XM_006255792
- Peptide Label: isoform X1
- UniProtKB: D3ZC46 (UniProtKB/TrEMBL),   A0A8I6ASZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255856   ⟸   XM_006255794
- Peptide Label: isoform X4
- UniProtKB: A6IZX9 (UniProtKB/TrEMBL),   A0A8I6GHP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255855   ⟸   XM_006255793
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ASZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000048508   ⟸   ENSRNOT00000046155
RefSeq Acc Id: ENSRNOP00000097466   ⟸   ENSRNOT00000107695
RefSeq Acc Id: ENSRNOP00000087778   ⟸   ENSRNOT00000111547
RefSeq Acc Id: ENSRNOP00000096792   ⟸   ENSRNOT00000105294
RefSeq Acc Id: ENSRNOP00000088994   ⟸   ENSRNOT00000096732
RefSeq Acc Id: ENSRNOP00000080994   ⟸   ENSRNOT00000112610
RefSeq Acc Id: ENSRNOP00000096680   ⟸   ENSRNOT00000099662
RefSeq Acc Id: NP_001387879   ⟸   NM_001400950
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001387880   ⟸   NM_001400951
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001387881   ⟸   NM_001400952
- Peptide Label: isoform 3
- UniProtKB: A0A8I6AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134022   ⟸   XM_063277952
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063134023   ⟸   XM_063277953
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063134024   ⟸   XM_063277954
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A7W6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZC46-F1-model_v2 AlphaFold D3ZC46 1-664 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701231
Promoter ID:EPDNEW_R11749
Type:initiation region
Name:Tcf25_1
Description:transcription factor 25
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01956,179,175 - 56,179,235EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309054 AgrOrtholog
BioCyc Gene G2FUF-5327 BioCyc
Ensembl Genes ENSRNOG00000017023 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046155.7 UniProtKB/TrEMBL
  ENSRNOT00000096732.1 UniProtKB/TrEMBL
  ENSRNOT00000099662 ENTREZGENE
  ENSRNOT00000099662.1 UniProtKB/TrEMBL
  ENSRNOT00000105294 ENTREZGENE
  ENSRNOT00000105294.1 UniProtKB/TrEMBL
  ENSRNOT00000107695.1 UniProtKB/TrEMBL
  ENSRNOT00000111547.1 UniProtKB/TrEMBL
  ENSRNOT00000112610.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro bHLH_Nulp1 UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
KEGG Report rno:292082 UniProtKB/TrEMBL
NCBI Gene 292082 ENTREZGENE
PANTHER bHLH_Nulp1 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR 25 UniProtKB/TrEMBL
Pfam DUF654 UniProtKB/TrEMBL
PhenoGen Tcf25 PhenoGen
RatGTEx ENSRNOG00000017023 RatGTEx
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8I5ZS26_RAT UniProtKB/TrEMBL
  A0A8I6A7W6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AR72 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ASZ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B5T8_RAT UniProtKB/TrEMBL
  A0A8I6GHP2 ENTREZGENE, UniProtKB/TrEMBL
  A6IZX9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZC46 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 Tcf25  transcription factor 25  Tcf25  transcription factor 25 (basic helix-loop-helix)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Tcf25  transcription factor 25 (basic helix-loop-helix)  RGD1309054_predicted  similar to FKSG26 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1309054_predicted  similar to FKSG26 protein (predicted)  LOC292082_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC292082_predicted  similar to FKSG26 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL