Mon1a (MON1 homolog A, secretory trafficking associated) - Rat Genome Database

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Gene: Mon1a (MON1 homolog A, secretory trafficking associated) Rattus norvegicus
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Symbol: Mon1a
Name: MON1 homolog A, secretory trafficking associated
RGD ID: 1308823
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in protein secretion. Predicted to act upstream of or within establishment of localization in cell; intracellular iron ion homeostasis; and protein transport. Predicted to be part of Mon1-Ccz1 complex. Orthologous to human MON1A (MON1 homolog A, secretory trafficking associated); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC315999; MON1 homolog A; MON1 homolog A (yeast); MON1 secretory trafficking family member A; RGD1308823; similar to RIKEN cDNA 2810468K17; vacuolar fusion protein MON1 homolog A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,452,868 - 117,471,780 (+)NCBIGRCr8
mRatBN7.28108,574,272 - 108,593,163 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,574,388 - 108,593,156 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,200,995 - 114,219,691 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,400,178 - 112,418,878 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,242,954 - 110,261,654 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,657,345 - 116,682,172 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,657,371 - 116,682,178 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,011,445 - 116,036,522 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,150,262 - 113,171,196 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18113,169,736 - 113,190,645 (+)NCBI
Celera8107,880,144 - 107,897,365 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Mon1-Ccz1 complex  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17632513   PMID:23084991   PMID:29038162  


Genomics

Comparative Map Data
Mon1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,452,868 - 117,471,780 (+)NCBIGRCr8
mRatBN7.28108,574,272 - 108,593,163 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,574,388 - 108,593,156 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,200,995 - 114,219,691 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,400,178 - 112,418,878 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,242,954 - 110,261,654 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,657,345 - 116,682,172 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,657,371 - 116,682,178 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,011,445 - 116,036,522 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,150,262 - 113,171,196 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18113,169,736 - 113,190,645 (+)NCBI
Celera8107,880,144 - 107,897,365 (+)NCBICelera
Cytogenetic Map8q32NCBI
MON1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,908,873 - 49,929,811 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,907,160 - 49,930,173 (-)EnsemblGRCh38hg38GRCh38
GRCh37349,946,306 - 49,967,244 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,921,310 - 49,942,261 (-)NCBINCBI36Build 36hg18NCBI36
Celera349,912,397 - 49,933,686 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef350,004,584 - 50,025,375 (-)NCBIHuRef
CHM1_1349,898,388 - 49,919,531 (-)NCBICHM1_1
T2T-CHM13v2.0349,938,770 - 49,959,744 (-)NCBIT2T-CHM13v2.0
Mon1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,765,282 - 107,780,338 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,765,350 - 107,780,338 (+)EnsemblGRCm39 Ensembl
GRCm389107,888,083 - 107,903,139 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,888,151 - 107,903,139 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,790,460 - 107,805,470 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,746,283 - 107,761,226 (+)NCBIMGSCv36mm8
Celera9107,496,336 - 107,511,353 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
Mon1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,790,929 - 1,812,125 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,793,233 - 1,811,675 (-)NCBIChiLan1.0ChiLan1.0
MON1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,895,233 - 49,916,587 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,900,006 - 49,921,362 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,840,824 - 49,862,101 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1351,077,398 - 51,099,498 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,077,398 - 51,099,498 (-)Ensemblpanpan1.1panPan2
MON1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,368,757 - 39,383,175 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,378,694 - 39,383,175 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,289,596 - 39,304,013 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,724,113 - 39,740,247 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,726,120 - 39,740,246 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,092,662 - 39,107,083 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,497,123 - 39,511,553 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,776,441 - 39,790,866 (+)NCBIUU_Cfam_GSD_1.0
Mon1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,753,299 - 64,766,678 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,513,753 - 1,527,506 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,513,796 - 1,527,121 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MON1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,426,736 - 32,437,862 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,426,733 - 32,437,735 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,607,468 - 35,618,469 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MON1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,315,251 - 11,334,295 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,315,396 - 11,333,991 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,661,356 - 155,682,339 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mon1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,821,485 - 3,841,452 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,818,653 - 3,833,697 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mon1a
165 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:66
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000024966
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000024966   ⟹   ENSRNOP00000024966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8108,574,388 - 108,593,156 (+)Ensembl
Rnor_6.0 Ensembl8116,657,371 - 116,682,178 (+)Ensembl
RefSeq Acc Id: NM_001126284   ⟹   NP_001119756
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,452,946 - 117,471,779 (+)NCBI
mRatBN7.28108,574,323 - 108,593,162 (+)NCBI
Rnor_6.08116,657,399 - 116,682,171 (+)NCBI
Rnor_5.08116,011,445 - 116,036,522 (+)NCBI
RGSC_v3.48113,150,262 - 113,171,196 (+)RGD
Celera8107,880,144 - 107,897,365 (+)RGD
Sequence:
RefSeq Acc Id: XM_039081597   ⟹   XP_038937525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,452,868 - 117,471,780 (+)NCBI
mRatBN7.28108,574,274 - 108,593,163 (+)NCBI
RefSeq Acc Id: XR_010053983
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,452,896 - 117,471,409 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001119756 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937525 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI61958 (Get FASTA)   NCBI Sequence Viewer  
  EDL77213 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024966.4
RefSeq Acc Id: NP_001119756   ⟸   NM_001126284
- UniProtKB: B1WC06 (UniProtKB/TrEMBL),   A6I314 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024966   ⟸   ENSRNOT00000024966
RefSeq Acc Id: XP_038937525   ⟸   XM_039081597
- Peptide Label: isoform X1
- UniProtKB: B1WC06 (UniProtKB/TrEMBL),   A6I314 (UniProtKB/TrEMBL)
Protein Domains
FUZ/MON1/HPS1 first Longin   FUZ/MON1/HPS1 second Longin   FUZ/MON1/HPS1 third Longin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC06-F1-model_v2 AlphaFold B1WC06 1-555 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696282
Promoter ID:EPDNEW_R6807
Type:initiation region
Name:Mon1a_1
Description:MON1 homolog A, secretory trafficking associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08116,657,400 - 116,657,460EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308823 AgrOrtholog
BioCyc Gene G2FUF-29170 BioCyc
Ensembl Genes ENSRNOG00000018502 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024966.8 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9027405 IMAGE-MGC_LOAD
InterPro FUZ/MON1/HPS1_longin_1 UniProtKB/TrEMBL
  FUZ/MON1/HPS1_longin_2 UniProtKB/TrEMBL
  FUZ/MON1/HPS1_longin_3 UniProtKB/TrEMBL
  Vacuolar_fusion_protein_MON1 UniProtKB/TrEMBL
KEGG Report rno:315999 UniProtKB/TrEMBL
MGC_CLONE MGC:187760 IMAGE-MGC_LOAD
NCBI Gene 315999 ENTREZGENE
PANTHER DUF254_SAND UniProtKB/TrEMBL
  VACUOLAR FUSION PROTEIN MON1 HOMOLOG A UniProtKB/TrEMBL
Pfam Fuz_longin_1 UniProtKB/TrEMBL
  Fuz_longin_2 UniProtKB/TrEMBL
  Fuz_longin_3 UniProtKB/TrEMBL
PhenoGen Mon1a PhenoGen
PRINTS YEAST73DUF UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018502 RatGTEx
UniProt A6I314 ENTREZGENE, UniProtKB/TrEMBL
  B1WC06 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Mon1a  MON1 homolog A, secretory trafficking associated  Mon1a  MON1 secretory trafficking family member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-19 Mon1a  MON1 secretory trafficking family member A  Mon1a  MON1 homolog A (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Mon1a  MON1 homolog A (yeast)   Mon1a_predicted  MON1 homolog A (yeast) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Mon1a_predicted  MON1 homolog A (yeast) (predicted)  RGD1308823_predicted  similar to RIKEN cDNA 2810468K17 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1308823_predicted  similar to RIKEN cDNA 2810468K17 (predicted)  LOC315999_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315999_predicted  similar to RIKEN cDNA 2810468K17 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL