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Gene: Thumpd2 (THUMP domain containing 2) Rattus norvegicus

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Symbol:

Thumpd2

Name:

THUMP domain containing 2

RGD ID:

1306878

Description:

Predicted to enable snRNA methyltransferase activity and tRNA (guanine) methyltransferase activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome and tRNA methylation. Predicted to be part of tRNA methyltransferase complex. Predicted to be active in nucleus. Orthologous to human THUMPD2 (THUMP domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313851; MGC108999; THUMP domain-containing protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	19,677,039 - 19,728,947 (+)	NCBI		GRCr8
mRatBN7.2	6	13,924,742 - 13,976,657 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	13,924,765 - 13,976,657 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	14,228,394 - 14,280,284 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	14,551,389 - 14,596,793 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	14,041,656 - 14,093,548 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	3,743,080 - 3,794,512 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	3,743,074 - 3,794,501 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	3,710,777 - 3,762,198 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	3,974,995 - 4,026,884 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	3,974,998 - 4,026,884 (-)	NCBI
Celera	6	13,611,109 - 13,658,637 (+)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Thumpd2	Rat	Lynch syndrome		ISO	THUMPD2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms	ClinVar	PMID:28492532
Thumpd2	Rat	Neurodevelopmental Disorders		ISO	THUMPD2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Thumpd2	Rat	1,2-dimethylhydrazine	increases expression	ISO	Thumpd2 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of THUMPD2 mRNA	CTD	PMID:22206623
Thumpd2	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Thumpd2 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of THUMPD2 mRNA	CTD	PMID:19465110
Thumpd2	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of THUMPD2 mRNA	CTD	PMID:21215274
Thumpd2	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	EXP		6480464	AHR protein alternative form affects the reaction [Tetrachlorodibenzodioxin results in decreased expression of THUMPD2 mRNA]	CTD	PMID:21215274
Thumpd2	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2 and 4-dinitrotoluene affects the expression of THUMPD2 mRNA	CTD	PMID:21346803
Thumpd2	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Thumpd2 (Mus musculus)	6480464	bisphenol S results in decreased expression of THUMPD2 mRNA	CTD	PMID:39298647
Thumpd2	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of THUMPD2 mRNA	CTD	PMID:30047161
Thumpd2	Rat	aflatoxin B1	increases expression	ISO	Thumpd2 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of THUMPD2 mRNA	CTD	PMID:19770486
Thumpd2	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of THUMPD2 mRNA	CTD	PMID:30047161
Thumpd2	Rat	amphetamine	decreases expression	EXP		6480464	Amphetamine results in decreased expression of THUMPD2 mRNA	CTD	PMID:30779732
Thumpd2	Rat	arsenite(3-)	multiple interactions	ISO	THUMPD2 (Homo sapiens)	6480464	arsenite promotes the reaction [G3BP1 protein binds to THUMPD2 mRNA]	CTD	PMID:32406909
Thumpd2	Rat	benzo[a]pyrene	decreases methylation	ISO	THUMPD2 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of THUMPD2 promoter	CTD	PMID:27901495
Thumpd2	Rat	beta-hexachlorocyclohexane	decreases expression	ISO	Thumpd2 (Mus musculus)	6480464	beta-hexachlorocyclohexane results in decreased expression of THUMPD2 mRNA	CTD	PMID:25270620
Thumpd2	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of THUMPD2 mRNA	CTD	PMID:25181051
Thumpd2	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of THUMPD2 gene	CTD	PMID:28505145
Thumpd2	Rat	cadmium dichloride	decreases expression	ISO	THUMPD2 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of THUMPD2 mRNA	CTD	PMID:38568856
Thumpd2	Rat	cylindrospermopsin	increases expression	ISO	THUMPD2 (Homo sapiens)	6480464	cylindrospermopsin results in increased expression of THUMPD2 mRNA	CTD	PMID:24921660
Thumpd2	Rat	dicrotophos	decreases expression	ISO	THUMPD2 (Homo sapiens)	6480464	dicrotophos results in decreased expression of THUMPD2 mRNA	CTD	PMID:28302478
Thumpd2	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of THUMPD2 mRNA	CTD	PMID:33387578
Thumpd2	Rat	leflunomide	increases expression	ISO	THUMPD2 (Homo sapiens)	6480464	leflunomide results in increased expression of THUMPD2 mRNA	CTD	PMID:28988120
Thumpd2	Rat	mercury atom	decreases expression	ISO	Thumpd2 (Mus musculus)	6480464	Mercury analog results in decreased expression of THUMPD2 mRNA	CTD	PMID:25056781
Thumpd2	Rat	mercury(0)	decreases expression	ISO	Thumpd2 (Mus musculus)	6480464	Mercury analog results in decreased expression of THUMPD2 mRNA	CTD	PMID:25056781
Thumpd2	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of THUMPD2 mRNA	CTD	PMID:30047161
Thumpd2	Rat	methyl methanesulfonate	increases expression	ISO	THUMPD2 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of THUMPD2 mRNA	CTD	PMID:23649840
Thumpd2	Rat	ozone	multiple interactions	ISO	Thumpd2 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of THUMPD2 mRNA	CTD	PMID:34911549
Thumpd2	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of THUMPD2 mRNA	CTD	PMID:33387578
Thumpd2	Rat	sodium arsenite	decreases expression	ISO	THUMPD2 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of THUMPD2 mRNA	CTD	PMID:38568856
Thumpd2	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of THUMPD2 mRNA	CTD	PMID:30047161
Thumpd2	Rat	titanium dioxide	decreases expression	ISO	Thumpd2 (Mus musculus)	6480464	titanium dioxide results in decreased expression of THUMPD2 mRNA	CTD	PMID:29264374
Thumpd2	Rat	triphenyl phosphate	affects expression	ISO	THUMPD2 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of THUMPD2 mRNA	CTD	PMID:37042841
Thumpd2	Rat	vinclozolin	increases methylation	EXP		6480464	vinclozolin results in increased methylation of THUMPD2 gene	CTD	PMID:31079544

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Thumpd2	Rat	methylation	involved_in	IEA	UniProtKB-KW:KW-0489	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Thumpd2	Rat	regulation of alternative mRNA splicing, via spliceosome	involved_in	IEA	UniProtKB:Q9BTF0 and ensembl:ENSP00000423933	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Thumpd2	Rat	regulation of alternative mRNA splicing, via spliceosome	involved_in	ISO	THUMPD2 (Homo sapiens)	1624291	PMID:37283053	RGD	PMID:37283053
Thumpd2	Rat	RNA processing	involved_in	IEA	ARBA:ARBA00028223	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Thumpd2	Rat	tRNA methylation	involved_in	IBA	PANTHER:PTN000382878 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Thumpd2	Rat	nucleus	is_active_in	ISO	THUMPD2 (Homo sapiens)	1624291	PMID:34948388	RGD	PMID:34948388
Thumpd2	Rat	nucleus	is_active_in	IEA	UniProtKB:Q9BTF0 and ensembl:ENSP00000423933	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Thumpd2	Rat	tRNA methyltransferase complex	part_of	IEA	UniProtKB:Q9BTF0 and ensembl:ENSP00000423933	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Thumpd2	Rat	tRNA methyltransferase complex	part_of	ISO	THUMPD2 (Homo sapiens)	1624291	PMID:37283053	RGD	PMID:37283053

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Thumpd2	Rat	methyltransferase activity	enables	IEA	UniProtKB-KW:KW-0489	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Thumpd2	Rat	protein binding	enables	ISO	THUMPD2 (Homo sapiens)	1624291	UniProtKB:O76024 more ...	RGD	PMID:32814053 and PMID:34948388
Thumpd2	Rat	RNA binding	enables	IEA	UniRule:UR000400507	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Thumpd2	Rat	RNA binding	enables	IEA	InterPro:IPR004114	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Thumpd2	Rat	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Thumpd2	Rat	tRNA (guanine) methyltransferase activity	enables	IBA	PANTHER:PTN000382878 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Thumpd2	Rat	U6 snRNA (guanine-N(2))-methyltransferase activity	enables	IEA	UniProtKB:Q9BTF0 and ensembl:ENSP00000423933	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Thumpd2	Rat	U6 snRNA (guanine-N(2))-methyltransferase activity	enables	ISO	THUMPD2 (Homo sapiens)	1624291	PMID:37283053	RGD	PMID:37283053

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932

Thumpd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	19,677,039 - 19,728,947 (+)	NCBI		GRCr8
mRatBN7.2	6	13,924,742 - 13,976,657 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	13,924,765 - 13,976,657 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	14,228,394 - 14,280,284 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	14,551,389 - 14,596,793 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	14,041,656 - 14,093,548 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	3,743,080 - 3,794,512 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	3,743,074 - 3,794,501 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	3,710,777 - 3,762,198 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	3,974,995 - 4,026,884 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	3,974,998 - 4,026,884 (-)	NCBI
Celera	6	13,611,109 - 13,658,637 (+)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

THUMPD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	39,736,060 - 39,779,276 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	39,736,060 - 39,779,267 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	39,963,200 - 40,006,416 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	39,816,949 - 39,859,881 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	39,875,095 - 39,918,028	NCBI
Celera	2	39,804,157 - 39,847,379 (-)	NCBI		Celera
Cytogenetic Map	2	p22.1	NCBI
HuRef	2	39,702,624 - 39,745,816 (-)	NCBI		HuRef
CHM1_1	2	39,893,491 - 39,936,707 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	39,745,056 - 39,788,273 (-)	NCBI		T2T-CHM13v2.0

Thumpd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	81,331,676 - 81,372,542 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	81,333,761 - 81,372,511 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	81,024,247 - 81,065,113 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	81,026,332 - 81,065,082 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	81,425,667 - 81,464,425 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	80,934,653 - 80,973,411 (-)	NCBI		MGSCv36	mm8
Celera	17	85,358,226 - 85,398,858 (-)	NCBI		Celera
Cytogenetic Map	17	E3	NCBI
cM Map	17	51.04	NCBI

Thumpd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	7,329,093 - 7,369,782 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955441	7,329,468 - 7,369,957 (-)	NCBI	ChiLan1.0	ChiLan1.0

THUMPD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	86,690,167 - 86,732,755 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	86,694,147 - 86,737,375 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	39,768,913 - 39,816,471 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	40,526,774 - 40,569,226 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	40,526,774 - 40,571,909 (-)	Ensembl	panpan1.1		panPan2

THUMPD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	31,701,025 - 31,738,451 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	31,701,475 - 31,738,478 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	31,460,906 - 31,498,263 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	32,359,635 - 32,397,274 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	32,359,660 - 32,397,265 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	31,580,931 - 31,618,257 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	31,650,259 - 31,687,785 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	31,864,590 - 31,902,483 (-)	NCBI		UU_Cfam_GSD_1.0

Thumpd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	40,140,558 - 40,182,653 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936508	11,569,170 - 11,611,609 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936508	11,569,195 - 11,611,264 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

THUMPD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	100,557,016 - 100,597,671 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	100,557,168 - 100,597,664 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	106,694,190 - 106,734,643 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

THUMPD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	67,589,985 - 67,632,144 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	44,305,947 - 44,375,406 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Thumpd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	21,237,709 - 21,287,551 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	21,238,535 - 21,287,491 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Thumpd2
325 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	147
Count of miRNA genes:	118
Interacting mature miRNAs:	126
Transcripts:	ENSRNOT00000011000
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	41223769	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	27574569	Rat
8693699	Alc37	Alcohol consumption QTL 37	2.6	0.224	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	7964167	21301982	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	34235784	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	54641141	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	41223769	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	37618905	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	41223769	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	39036266	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	43394190	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	41223769	Rat
2293706	Bmd20	Bone mineral density QTL 20	4.3	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	5074497	19988050	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	41223769	Rat
2292616	Ept15	Estrogen-induced pituitary tumorigenesis QTL 15	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	9843312	20338915	Rat
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	27574569	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	27574569	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	42487980	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	42487980	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42838846	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	11735669	72593685	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	27574569	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	34434305	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	11735669	72593685	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	72227641	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	42487980	Rat
1358190	Ept1	Estrogen-induced pituitary tumorigenesis QTL 1	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	9843312	20338915	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	27574569	Rat
8693690	Alc35	Alcohol consumption QTL 35	2.2	0.606	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	7964167	21301982	Rat

RH130889

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	13,947,264 - 13,947,448 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	3,771,818 - 3,772,001	NCBI	Rnor6.0
Rnor_5.0	6	3,739,515 - 3,739,698	UniSTS	Rnor5.0
RGSC_v3.4	6	4,004,199 - 4,004,382	UniSTS	RGSC3.4
Celera	6	13,633,564 - 13,633,747	UniSTS
Cytogenetic Map	6	q12	UniSTS

RH132120

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	13,976,412 - 13,976,562 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	3,743,175 - 3,743,324	NCBI	Rnor6.0
Rnor_5.0	6	3,710,872 - 3,711,021	UniSTS	Rnor5.0
RGSC_v3.4	6	3,975,090 - 3,975,239	UniSTS	RGSC3.4
Celera	6	13,658,393 - 13,658,542	UniSTS
Cytogenetic Map	6	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001012108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001163506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001410276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005505504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011000 ⟹ ENSRNOP00000011000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	13,924,765 - 13,976,657 (+)	Ensembl
Rnor_6.0 Ensembl	6	3,743,080 - 3,794,501 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084499 ⟹ ENSRNOP00000071513

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	13,924,765 - 13,976,653 (+)	Ensembl
Rnor_6.0 Ensembl	6	3,743,084 - 3,794,501 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087891 ⟹ ENSRNOP00000075202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	13,924,765 - 13,976,653 (+)	Ensembl
Rnor_6.0 Ensembl	6	3,743,074 - 3,794,489 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100728 ⟹ ENSRNOP00000086376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	13,934,280 - 13,974,854 (+)	Ensembl

RefSeq Acc Id:

NM_001012108 ⟹ NP_001012108

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,060 - 19,728,944 (+)	NCBI
mRatBN7.2	6	13,924,765 - 13,976,654 (+)	NCBI
Rnor_6.0	6	3,743,083 - 3,794,501 (-)	NCBI
Rnor_5.0	6	3,710,777 - 3,762,198 (-)	NCBI
RGSC_v3.4	6	3,974,995 - 4,026,884 (-)	RGD
Celera	6	13,611,109 - 13,658,634 (+)	NCBI

Sequence:

show sequence

CGCCCGAGCACCATGGCGGCGGCCGGGGCAGACCCGGGTTCTGAACCCGCTGGCGGCGCCCAGTTCTTCTGCACCGCGGGCCGCGGCCTGGAGCCGTTCTTGATGCGGGAGGTGCGCGCGCGGCTGGA
GGCCACGCAGGTTGAATATATTTCAGGAAAAGTGTTTTTCACTACCTGTTCAGATTTGCCCTCGATGAAGAAGTTAAAGTCAGCGGAAAGACTGTTTTTGTTGATTAAGAAGCAGCTTCCCATTACGG
TCTCCTCCCTGCACAGAGGAAGACTACTTAATGAAATGCAAAGATTTATAAACGATGACCCAGGAAGCTGGCTGAAGGCGATTTCACTCTGGAGAAAACTTCTCGACCATGATACAAATGGAGAAAAG
GTTTCTCAAGGGGATGCTAACCCACTAAAACGGAAAGCAGGAGAAAATGACAGTATCACTCCTAAGAAATTGAAATTAGAGGAGATGCAAGTGGTTGACAAGAGTCACGGGGAAAGCCAGCAGGACCA
ACCACAAGGCCCACTGGAGCAAGGGGAAACTCTCGCTAGAACGGACGAGCTCCAAGAGCAAAGACTCCACAGAGCCTCGGAGACGGCGGCGCATGCTCAGAGCCCGGAGGACTTGACCTTCAGGATTT
CCTGTCGCTGCAGCGGGAGTATCAGAAAGGTTGTCACCGGACAGGAGGCAGGAAGAGTGGCTGGACTGGCTCTCATGAGGCAGTTTGGTTGGAAAGCTGATTTGAGGAAGCCAGACTTAGAGGCAGGA
GCCCTGGTTTTAGATCCAATGTGTGGCCTTGGGACTATACTTGTGGAAGCTGCTGAAGAGTGGCCAGACGTATTTTACGTGGGTGCTGATGTGAGCGACTCGCAGTTACTTGGCGCATGTGACAATCT
GAAGGCCGCAGGCCTTGCACACAGGATCGAGTTACTCAAAGGCTCTGTCGCAGATTTACCACTGCCAGCTCAAAGTGTGGACGTTATTATTTCTGACATTCCATTTGGAAAAAAATTTAAGTTGGGAA
AAGACATCAAAAGCATTCTACAAGAAATGGAAAGAAATCCTATAACAGCCTCCATCTTCAAAAATGCTCACCCTCCCAGTGTTCCTGTCAAGGTGGCCGTTGTGGAGAAAGGGGACAGAATACCCGGC
TGGAGAGGGAGACCATCCTGGCTGTGCTGTAGGCATCGTCAAGAGATGCCTGCCTACAGAGGTGGCAGCAGAAGGAGTGCTGCACGTTGATGGAGTCATGATCTTGTTGCTCAGTGAGGATCACCACC
GGCGTCTTACAGACTGTGGAGGCAGCAGCATGCCCCCGACTTCCCAGGGCAACGTCTCTGACCCTGAGATGAAGATGCTTTTGAATCCTGACAGAACTGGTGCCCCAGACACAGCATCACCTTCACAG
AAAGCAAGCAGCTTGCAAAGTCTGGGCAGGCCATTGCCCTGTGGCTCATTGGTGCCAGTGGAGTCCTTCAAAGTCAGCCTTGGCAAAACAGATGCTTTCATATGTAAGTATAAGAAGGCATCCGCTTC
GGGACTGTCCCCATCCCGATGCCATGAGCCAGGTGCACATCCTGAGGTGGCAGCCATGCAAGGATCCCCTGGTCTCCAGGATTCCATATGCCCCGGAGCTCCAAGCGCACAGCCTCTACCGGTGGGCA
TGGCCAAGAACACAGCAGTCCGATGAGGCGCCCTGCTTTGTCCTCTCCAGTATTCAGCTCTTAAAGAACAGCGGATTAAGATGTTGGAAAGACTTGATGTAAAAAGTACTTCTTCCCAAAAGTCTGAC
TTGAGGAAACCTTTATGTGTAACTTTTTTATATATTAAACTTCATCTTTTTAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001163506 ⟹ NP_001156978

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,060 - 19,728,947 (+)	NCBI
mRatBN7.2	6	13,924,765 - 13,976,657 (+)	NCBI
Rnor_6.0	6	3,743,080 - 3,794,501 (-)	NCBI
Rnor_5.0	6	3,710,777 - 3,762,198 (-)	NCBI
RGSC_v3.4	6	3,974,995 - 4,026,884 (-)	RGD
Celera	6	13,611,109 - 13,658,637 (+)	RGD

Sequence:

show sequence

CGCCCGAGCACCATGGCGGCGGCCGGGGCAGACCCGGGTTCTGAACCCGCTGGCGGCGCCCAGTTCTTCTGCACCGCGGGCCGCGGCCTGGAGCCGTTCTTGATGCGGGAGGTGCGCGCGCGGCTGGA
GGCCACGCAGGTTGAATATATTTCAGGAAAAGTGTTTTTCACTACCTGTTCAGATTTGCCCTCGATGAAGAAGTTAAAGTCAGCGGAAAGACTGTTTTTGTTGATTAAGAAGCAGCTTCCCATTACGG
TCTCCTCCCTGCACAGAGGAAGACTACTTAATGAAATGCAAAGATTTATAAACGATGACCCAGGAAGCTGGCTGAAGGCGATTTCACTCTGGAGAAAACTTCTCGACCATGATACAAATGGAGAAAAG
GTTTCTCAAGGGGATGCTAACCCACTAAAACGGAAAGCAGGAGAAAATGACAGTATCACTCCTAAGAAATTGAAATTAGAGGAGATGCAAGTGGTTGACAAGAGTCACGGGGAAAGCCAGCAGGACCA
ACCACAAGGCCCACTGGAGCAAGGGGAAACTCTCGCTAGAACGGACGAGCTCCAAGAGCAAAGACTCCACAGAGCCTCGGAGACGGCGGCGCATGCTCAGAGCCCGGAGGACTTGACCTTCAGGATTT
CCTGTCGCTGCAGCGGGAGTATCAGAAAGGTTGTCACCGGACAGGAGGCAGGAAGAGTGGCTGGACTGGCTCTCATGAGGCAGTTTGGTTGGAAAGCTGATTTGAGGAAGCCAGACTTAGAGATCTTC
ATGCACCTGAGTGATGCCTACTCTGTGGTGGGGATTCCTCTGCTCAGAGTTCCCTTAGCCAGCAGAACTTACCTCCAGACAGCGGGGCTGCGGTCAACCATAGCGTGGGCTATGGCATCCATTGCAGA
AATTAAGGCAGGAGCCCTGGTTTTAGATCCAATGTGTGGCCTTGGGACTATACTTGTGGAAGCTGCTGAAGAGTGGCCAGACGTATTTTACGTGGGTGCTGATGTGAGCGACTCGCAGTTACTTGGCG
CATGTGACAATCTGAAGGCCGCAGGCCTTGCACACAGGATCGAGTTACTCAAAGGCTCTGTCGCAGATTTACCACTGCCAGCTCAAAGTGTGGACGTTATTATTTCTGACATTCCATTTGGAAAAAAA
TTTAAGTTGGGAAAAGACATCAAAAGCATTCTACAAGAAATGGAAAGAGTGCTGCACGTTGATGGAGTCATGATCTTGTTGCTCAGTGAGGATCACCACCGGCGTCTTACAGACTGTGGAGGCAGCAG
CATGCCCCCGACTTCCCAGGGCAACGTCTCTGACCCTGAGATGAAGATGCTTTTGAATCCTGACAGAACTGGTGCCCCAGACACAGCATCACCTTCACAGAAAGCAAGCAGCTTGCAAAGTCTGGGCA
GGCCATTGCCCTGTGGCTCATTGGTGCCAGTGGAGTCCTTCAAAGTCAGCCTTGGCAAAACAGATGCTTTCATATGTAAGTATAAGAAGGCATCCGCTTCGGGACTGTCCCCATCCCGATGCCATGAG
CCAGGTGCACATCCTGAGGTGGCAGCCATGCAAGGATCCCCTGGTCTCCAGGATTCCATATGCCCCGGAGCTCCAAGCGCACAGCCTCTACCGGTGGGCATGGCCAAGAACACAGCAGTCCGATGAGG
CGCCCTGCTTTGTCCTCTCCAGTATTCAGCTCTTAAAGAACAGCGGATTAAGATGTTGGAAAGACTTGATGTAAAAAGTACTTCTTCCCAAAAGTCTGACTTGAGGAAACCTTTATGTGTAACTTTTT
TATATATTAAACTTCATCTTTTTAAACCTATAA

hide sequence

RefSeq Acc Id:

NM_001410276 ⟹ NP_001397205

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,060 - 19,728,944 (+)	NCBI
mRatBN7.2	6	13,924,765 - 13,976,654 (+)	NCBI

RefSeq Acc Id:

XM_006239673 ⟹ XP_006239735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,045 - 19,728,944 (+)	NCBI
mRatBN7.2	6	13,924,742 - 13,976,654 (+)	NCBI
Rnor_6.0	6	3,743,083 - 3,794,512 (-)	NCBI
Rnor_5.0	6	3,710,777 - 3,762,198 (-)	NCBI

Sequence:

show sequence

TCTCGGGGTCGCGCCCGAGCACCATGGCGGCGGCCGGGGCAGACCCGGGTTCTGAACCCGCTGG
CGGCGCCCAGTTCTTCTGCACCGCGGGCCGCGGCCTGGAGCCGTTCTTGATGCGGGAGGTGCGCGCGCGGCTGGAGGCCACGCAGGTTGAATATATTTCAGGAAAAGTGTTTTTCACTACCTGTTCAG
ATTTGCCCTCGATGAAGAAGTTAAAGTCAGCGGAAAGACTGTTTTTGTTGATTAAGAAGCAGCTTCCCATTACGGTCTCCTCCCTGCACAGAGGAAGACTACTTAATGAAATGCAAAGATTTATAAAC
GATGACCCAGGAAGCTGGCTGAAGGCGATTTCACTCTGGAGAAAACTTCTCGACCATGATACAAATGGAGAAAAGGTTTCTCAAGGGGATGCTAACCCACTAAAACGGAAAGCAGGAGAAAATGACAG
TATCACTCCTAAGAAATTGAAATTAGAGGAGATGCAAGTGGTTGACAAGAGTCACGGGGAAAGCCAGCAGGACCAACCACAAGGCCCACTGGAGCAAGGGGAAACTCTCGCTAGAACGGACGAGCTCC
AAGAGCAAAGACTCCACAGAGCCTCGGAGACGGCGGCGCATGCTCAGAGCCCGGAGGACTTGACCTTCAGGATTTCCTGTCGCTGCAGCGGGAGTATCAGAAAGGTTGTCACCGGACAGGAGGCAGGA
AGAGTGGCTGGACTGGCTCTCATGAGGCAGTTTGGTTGGAAAGCTGATTTGAGGAAGCCAGACTTAGAGGCAGGAGCCCTGGTTTTAGATCCAATGTGTGGCCTTGGGACTATACTTGTGGAAGCTGC
TGAAGAGTGGCCAGACGTATTTTACGTGGGTGCTGATGTGAGCGACTCGCAGTTACTTGGCGCATGTGACAATCTGAAGGCCGCAGGCCTTGCACACAGGATCGAGTTACTCAAAGGCTCTGTCGCAG
ATTTACCACTGCCAGCTCAAAGTGTGGACGTTATTATTTCTGACATTCCATTTGGAAAAAAATTTAAGTTGGGAAAAGACATCAAAAGCATTCTACAAGAAATGGAAAGGTGGCCGTTGTGGAGAAAG
GGGACAGAATACCCGGCTGGAGAGGGAGACCATCCTGGCTGTGCTGTAGGCATCGTCAAGAGATGCCTGCCTACAGAGGTGGCAGCAGAAGGAGTGCTGCACGTTGATGGAGTCATGATCTTGTTGCT
CAGTGAGGATCACCACCGGCGTCTTACAGACTGTGGAGGCAGCAGCATGCCCCCGACTTCCCAGGGCAACGTCTCTGACCCTGAGATGAAGATGCTTTTGAATCCTGACAGAACTGGTGCCCCAGACA
CAGCATCACCTTCACAGAAAGCAAGCAGCTTGCAAAGTCTGGGCAGGCCATTGCCCTGTGGCTCATTGGTGCCAGTGGAGTCCTTCAAAGTCAGCCTTGGCAAAACAGATGCTTTCATATGTAAGTAT
AAGAAGGCATCCGCTTCGGGACTGTCCCCATCCCGATGCCATGAGCCAGGTGCACATCCTGAGGTGGCAGCCATGCAAGGATCCCCTGGTCTCCAGGATTCCATATGCCCCGGAGCTCCAAGCGCACA
GCCTCTACCGGTGGGCATGGCCAAGAACACAGCAGTCCGATGAGGCGCCCTGCTTTGTCCTCTCCAGTATTCAGCTCTTAAAGAACAGCGGATTAAGATGTTGGAAAGACTTGATGTAAAAAGTACTT
CTTCCCAAAAGTCTGACTTGAGGAAACCTTTATGTGTAACTTTTTTATATATTAAACTTCATCTTTTTAAACCTA

hide sequence

RefSeq Acc Id:

XM_006239675 ⟹ XP_006239737

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,045 - 19,728,944 (+)	NCBI
mRatBN7.2	6	13,924,742 - 13,976,173 (+)	NCBI
Rnor_6.0	6	3,743,612 - 3,794,512 (-)	NCBI
Rnor_5.0	6	3,710,777 - 3,762,198 (-)	NCBI

Sequence:

show sequence

TCTCGGGGTCGCGCCCGAGCACCATGGCGGCGGCCGGGGCAGACCCGGGTTCTGAACCCGCTGGCGGCGCCCAGTTCTTCTGCACCGCGGGCCGCGGCCTGGAGCCGTTCTTGATGCGGGAGGTGCGC
GCGCGGCTGGAGGCCACGCAGGTTGAATATATTTCAGGAAAAGTGTTTTTCACTACCTGTTCAGATTTGCCCTCGATGAAGAAGTTAAAGTCAGCGGAAAGACTGTTTTTGTTGATTAAGAAGCAGCT
TCCCATTACGGTCTCCTCCCTGCACAGAGGAAGACTACTTAATGAAATGCAAAGATTTATAAACGATGACCCAGGAAGCTGGCTGAAGGCGATTTCACTCTGGAGAAAACTTCTCGACCATGATACAA
ATGGAGAAAAGGTTTCTCAAGGGGATGCTAACCCACTAAAACGGAAAGCAGGAGAAAATGACAGTATCACTCCTAAGAAATTGAAATTAGAGGAGATGCAAGTGGTTGACAAGAGTCACGGGGAAAGC
CAGCAGGACCAACCACAAGGCCCACTGGAGCAAGGGGAAACTCTCGCTAGAACGGACGAGCTCCAAGAGCAAAGACTCCACAGAGCCTCGGAGACGGCGGCGCATGCTCAGAGCCCGGAGGACTTGAC
CTTCAGGATTTCCTGTCGCTGCAGCGGGAGTATCAGAAAGGTTGTCACCGGACAGGAGGCAGGAAGAGTGGCTGGACTGGCTCTCATGAGGCAGTTTGGTTGGAAAGCTGATTTGAGGAAGCCAGACT
TAGAGATCTTCATGCACCTGAGTGATGCCTACTCTGTGGTGGGGATTCCTCTGCTCAGAGTTCCCTTAGCCAGCAGAACTTACCTCCAGACAGCGGGGCTGCGGTCAACCATAGCGTGGGCTATGGCA
TCCATTGCAGAAATTAAGGCAGGAGCCCTGGTTTTAGATCCAATGTGTGGCCTTGGGACTATACTTGTGGAAGCTGCTGAAGAGTGGCCAGACGTATTTTACGTGGGTGCTGATGTGAGCGACTCGCA
GTTACTTGGCGCATGTGACAATCTGAAGGCCGCAGGCCTTGCACACAGGATCGAGTTACTCAAAGGCTCTGTCGCAGATTTACCACTGCCAGCTCAAAGTGTGGACGTTATTATTTCTGACATTCCAT
TTGGAAAAAAATTTAAGTTGGGAAAAGACATCAAAAGCATTCTACAAGAAATGGAAAGTGTTCCTGTCAAGGTGGCCGTTGTGGAGAAAGGGGACAGAATACCCGGCTGGAGAGGGAGACCATCCTGG
CTGTGCTGTAGGCATCGTCAAGAGATGCCTGCCTACAGAGGTGGCAGCAGAAGGGTAGGGCCTGAAGCACACAAGGGGAGGCCTGTTAAGTGGAGAGAGAGCCGTGAGACCAAGTGGTTAAAGGCAGA
AGCATGTTAGTGCATTCGAGTGACTGAAGGAAGATCCTTGGCCAAAGAGAGGCAGGCAGGCAGGCAGTGGGTCTAAAACACAGGAGCGGGCAGACTACAGAGCAGCCTTGAGCACCACAGGACAAACT
TCAGGCATGTGCCTTCTTGAGTGGACACTGGCAAGACATGGTGGGAGCGGGTACCGAGTGGACTCTTCCTTTCTGCCCTGGCCTTCCATCCCCAGGCTTACTAACCAGGGCCACTTGCTGGTCCTATA
GCTTTTGACACTTGATACCGTGCTCCTTTGGCCTCCATGGCACTGCCAGTGTTCCAGCTTTCTCTACATTTCCTGGTTCTCTTCCACAGTCCACAGAGAGAAGTCTCTGACTCTGCCTCAAGCCTTGG
TCTCAGGACCCCCAGACTGCACACTTAGCTGACCTTTGGAACCCCTGATACCATCCATGGCATCATCCCATGCTGAGCTCTGCTCCCCTCTTTCTGCTCCCCCCACCAGGCTGAGCTGCTTTCAATGC
CTCCTGTTGCCTCTGTCCCCACTGCCTCCCAGGCCCCTTCCTGTCACTGGGCTAGCTCACTCCTGAGCCTGTTTTTGGAGCCTCTAGTGTGCACCTTGCAGCATCTGCCTCACCCTCGTTGTCCCTTG
CCTCTCCCTCACTGCTGTGACCTTTTAGTCACTCACGAGCTGTCACTGATCCCATGGATGGGTCACTGACAGCCCTTGAATGACTGAGTAAATAAATCCTCAAAAGCTGATGTTTCCTGATCCACTCT
CTGTGGATCCATCCCTTAACCAACCGTCCCTAGTTCATGTCCTGACTCCTCCCTGGCGGCTTCTGCGGGCAGCCTTTTCTTCCTTAAATATGCTAATTCCACAGGGTTCTGACACTTGCCTGTCTTGT
TCTACAATCATTTATTAGAATGCGACTACAAATTACTTTGAAGCTTGCCTTCTAAGTAGAGCAAAAATAGATAATTAAAGCAGATTTGTACTAGAGATTCCATAATTACTATAATGAATATGCATTAT
GGAAGATGCTACCTAATTATCAAAACTCTTTTATTTAAATAGATGAAATTAAATTTCAGATTAACAACTATTTTAAATACATTGGAACGGTTTGTTGTCTCAGAACACAGAAACACTCATCCCAATTA
CCGATTGTTTGGGTTTTGGGTTTTTTTCCTCACAGAGTGCTGCACGTTGATGGAGTCATGATCTTGTTGCTCAGTGAGGATCACCACCGGCGTCTTACAGACTGTGGAGGCAGCAGCATGCCCCCGAC
T

hide sequence

RefSeq Acc Id:

XM_006239677 ⟹ XP_006239739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,045 - 19,728,944 (+)	NCBI
mRatBN7.2	6	13,924,742 - 13,976,173 (+)	NCBI
Rnor_6.0	6	3,743,612 - 3,794,512 (-)	NCBI
Rnor_5.0	6	3,710,777 - 3,762,198 (-)	NCBI

Sequence:

show sequence

TCTCGGGGTCGCGCCCGAGCACCATGGCGGCGGCCGGGGCAGACCCGGGTTCTGAACCCGCTGG
CGGCGCCCAGTTCTTCTGCACCGCGGGCCGCGGCCTGGAGCCGTTCTTGATGCGGGAGGTGCGCGCGCGGCTGGAGGCCACGCAGGTTGAATATATTTCAGGAAAAGTGTTTTTCACTACCTGTTCAG
ATTTGCCCTCGATGAAGAAGTTAAAGTCAGCGGAAAGACTGTTTTTGTTGATTAAGAAGCAGCTTCCCATTACGGTCTCCTCCCTGCACAGAGGAAGACTACTTAATGAAATGCAAAGATTTATAAAC
GATGACCCAGGAAGCTGGCTGAAGGCGATTTCACTCTGGAGAAAACTTCTCGACCATGATACAAATGGAGAAAAGGTTTCTCAAGGGGATGCTAACCCACTAAAACGGAAAGCAGGAGAAAATGACAG
TATCACTCCTAAGAAATTGAAATTAGAGGAGATGCAAGTGGTTGACAAGAGTCACGGGGAAAGCCAGCAGGACCAACCACAAGGCCCACTGGAGCAAGGGGAAACTCTCGCTAGAACGGACGAGCTCC
AAGAGCAAAGACTCCACAGAGCCTCGGAGACGGCGGCGCATGCTCAGAGCCCGGAGGACTTGACCTTCAGGATTTCCTGTCGCTGCAGCGGGAGTATCAGAAAGGTTGTCACCGGACAGGAGGCAGGA
AGAGTGGCTGGACTGGCTCTCATGAGGCAGTTTGGTTGGAAAGCTGATTTGAGGAAGCCAGACTTAGAGGCAGGAGCCCTGGTTTTAGATCCAATGTGTGGCCTTGGGACTATACTTGTGGAAGCTGC
TGAAGAGTGGCCAGACGTATTTTACGTGGGTGCTGATGTGAGCGACTCGCAGTTACTTGGCGCATGTGACAATCTGAAGGCCGCAGGCCTTGCACACAGGATCGAGTTACTCAAAGGCTCTGTCGCAG
ATTTACCACTGCCAGCTCAAAGTGTGGACGTTATTATTTCTGACATTCCATTTGGAAAAAAATTTAAGTTGGGAAAAGACATCAAAAGCATTCTACAAGAAATGGAAAGAAATCCTATAACAGCCTCC
ATCTTCAAAAATGCTCACCCTCCCAGTGTTCCTGTCAAGGTGGCCGTTGTGGAGAAAGGGGACAGAATACCCGGCTGGAGAGGGAGACCATCCTGGCTGTGCTGTAGGCATCGTCAAGAGATGCCTGC
CTACAGAGGTGGCAGCAGAAGGGTAGGGCCTGAAGCACACAAGGGGAGGCCTGTTAAGTGGAGAGAGAGCCGTGAGACCAAGTGGTTAAAGGCAGAAGCATGTTAGTGCATTCGAGTGACTGAAGGAA
GATCCTTGGCCAAAGAGAGGCAGGCAGGCAGGCAGTGGGTCTAAAACACAGGAGCGGGCAGACTACAGAGCAGCCTTGAGCACCACAGGACAAACTTCAGGCATGTGCCTTCTTGAGTGGACACTGGC
AAGACATGGTGGGAGCGGGTACCGAGTGGACTCTTCCTTTCTGCCCTGGCCTTCCATCCCCAGGCTTACTAACCAGGGCCACTTGCTGGTCCTATAGCTTTTGACACTTGATACCGTGCTCCTTTGGC
CTCCATGGCACTGCCAGTGTTCCAGCTTTCTCTACATTTCCTGGTTCTCTTCCACAGTCCACAGAGAGAAGTCTCTGACTCTGCCTCAAGCCTTGGTCTCAGGACCCCCAGACTGCACACTTAGCTGA
CCTTTGGAACCCCTGATACCATCCATGGCATCATCCCATGCTGAGCTCTGCTCCCCTCTTTCTGCTCCCCCCACCAGGCTGAGCTGCTTTCAATGCCTCCTGTTGCCTCTGTCCCCACTGCCTCCCAG
GCCCCTTCCTGTCACTGGGCTAGCTCACTCCTGAGCCTGTTTTTGGAGCCTCTAGTGTGCACCTTGCAGCATCTGCCTCACCCTCGTTGTCCCTTGCCTCTCCCTCACTGCTGTGACCTTTTAGTCAC
TCACGAGCTGTCACTGATCCCATGGATGGGTCACTGACAGCCCTTGAATGACTGAGTAAATAAATCCTCAAAAGCTGATGTTTCCTGATCCACTCTCTGTGGATCCATCCCTTAACCAACCGTCCCTA
GTTCATGTCCTGACTCCTCCCTGGCGGCTTCTGCGGGCAGCCTTTTCTTCCTTAAATATGCTAATTCCACAGGGTTCTGACACTTGCCTGTCTTGTTCTACAATCATTTATTAGAATGCGACTACAAA
TTACTTTGAAGCTTGCCTTCTAAGTAGAGCAAAAATAGATAATTAAAGCAGATTTGTACTAGAGATTCCATAATTACTATAATGAATATGCATTATGGAAGATGCTACCTAATTATCAAAACTCTTTT
ATTTAAATAGATGAAATTAAATTTCAGATTAACAACTATTTTAAATACATTGGAACGGTTTGTTGTCTCAGAACACAGAAACACTCATCCCAATTACCGATTGTTTGGGTTTTGGGTTTTTTTCCTCA
CAGAGTGCTGCACGTTGATGGAGTCATGATCTTGTTGCTCAGTGAGGATCACCACCGGCGTCTTACAGACTGTGGAGGCAGCAGCATGCCCCCGACT

hide sequence

RefSeq Acc Id:

XM_008764440 ⟹ XP_008762662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,039 - 19,728,944 (+)	NCBI
mRatBN7.2	6	13,924,742 - 13,976,183 (+)	NCBI
Rnor_6.0	6	3,743,599 - 3,794,512 (-)	NCBI

Sequence:

show sequence

TCTCGGGGTCGCGCCCGAGCACCATGGCGGCGGCCGGGGCAGACCCGGGTTCTGAACCCGCTGGCGGCGCCCAGTTCTTCTGCACCGCGGGCCGCGGCCTGGAGCCGTTCTTGATGCGGGAGGTGCGC
GCGCGGCTGGAGGCCACGCAGGTTGAATATATTTCAGGAAAAGTGTTTTTCACTACCTGTTCAGATTTGCCCTCGATGAAGAAGTTAAAGTCAGCGGAAAGACTGTTTTTGTTGATTAAGAAGCAGCT
TCCCATTACGGTCTCCTCCCTGCACAGAGGAAGACTACTTAATGAAATGCAAAGATTTATAAACGATGACCCAGGAAGCTGGCTGAAGGCGATTTCACTCTGGAGAAAACTTCTCGACCATGATACAA
ATGGAGAAAAGGTTTCTCAAGGGGATGCTAACCCACTAAAACGGAAAGCAGGAGAAAATGACAGTATCACTCCTAAGAAATTGAAATTAGAGGAGATGCAAGTGGTTGACAAGAGTCACGGGGAAAGC
CAGCAGGACCAACCACAAGGCCCACTGGAGCAAGGGGAAACTCTCGCTAGAACGGACGAGCTCCAAGAGCAAAGACTCCACAGAGCCTCGGAGACGGCGGCGCATGCTCAGAGCCCGGAGGACTTGAC
CTTCAGGATTTCCTGTCGCTGCAGCGGGAGTATCAGAAAGGTTGTCACCGGACAGGAGGCAGGAAGAGTGGCTGGACTGGCTCTCATGAGGCAGTTTGGTTGGAAAGCTGATTTGAGGAAGCCAGACT
TAGAGATCTTCATGCACCTGAGTGATGCCTACTCTGTGGTGGGGATTCCTCTGCTCAGAGTTCCCTTAGCCAGCAGAACTTACCTCCAGACAGCGGGGCTGCGGTCAACCATAGCGTGGGCTATGGCA
TCCATTGCAGAAATTAAGGCAGGAGCCCTGGTTTTAGATCCAATGTGTGGCCTTGGGACTATACTTGTGGAAGCTGCTGAAGAGTGGCCAGACGTATTTTACGTGGGTGCTGATGTGAGCGACTCGCA
GTTACTTGGCGCATGTGACAATCTGAAGGCCGCAGGCCTTGCACACAGGATCGAGTTACTCAAAGGCTCTGTCGCAGATTTACCACTGCCAGCTCAAAGTGTGGACGTTATTATTTCTGACATTCCAT
TTGGAAAAAAATTTAAGTTGGGAAAAGACATCAAAAGCATTCTACAAGAAATGGAAAGTGTTCCTGTCAAGGTGGCCGTTGTGGAGAAAGGGGACAGAATACCCGGCTGGAGAGGGAGACCATCCTGG
CTGTGCTGTAGGCATCGTCAAGAGATGCCTGCCTACAGAGGTGGCAGCAGAAGGAGTGCTGCACGTTGATGGAGTCATGATCTTGTTGCTCAGTGAGGATCACCACCGGCGTCTTACAGACTGTGGAG
GCAGCAGCATGCCCCCGACTTCCCAGGGCAACG

hide sequence

RefSeq Acc Id:

XM_017594116 ⟹ XP_017449605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,045 - 19,728,944 (+)	NCBI
mRatBN7.2	6	13,924,742 - 13,972,933 (+)	NCBI
Rnor_6.0	6	3,746,910 - 3,794,512 (-)	NCBI

Sequence:

show sequence

TCTCGGGGTCGCGCCCGAGCACCATGGCGGCGGCCGGGGCAGACCCGGGTTCTGAACCCGCTGG
CGGCGCCCAGTTCTTCTGCACCGCGGGCCGCGGCCTGGAGCCGTTCTTGATGCGGGAGGTGCGCGCGCGGCTGGAGGCCACGCAGGTTGAATATATTTCAGGAAAAGTGTTTTTCACTACCTGTTCAG
ATTTGCCCTCGATGAAGAAGTTAAAGTCAGCGGAAAGACTGTTTTTGTTGATTAAGAAGCAGCTTCCCATTACGGTCTCCTCCCTGCACAGAGGAAGACTACTTAATGAAATGCAAAGATTTATAAAC
GATGACCCAGGAAGCTGGCTGAAGGCGATTTCACTCTGGAGAAAACTTCTCGACCATGATACAAATGGAGAAAAGGTTTCTCAAGGGGATGCTAACCCACTAAAACGGAAAGCAGGAGAAAATGACAG
TATCACTCCTAAGAAATTGAAATTAGAGGAGATGCAAGTGGTTGACAAGAGTCACGGGGAAAGCCAGCAGGACCAACCACAAGGCCCACTGGAGCAAGGGGAAACTCTCGCTAGAACGGACGAGCTCC
AAGAGCAAAGACTCCACAGAGCCTCGGAGACGGCGGCGCATGCTCAGAGCCCGGAGGACTTGACCTTCAGGATTTCCTGTCGCTGCAGCGGGAGTATCAGAAAGGTTGTCACCGGACAGGAGGCAGGA
AGAGTGGCTGGACTGGCTCTCATGAGGCAGTTTGGTTGGAAAGCTGATTTGAGGAAGCCAGACTTAGAGATCTTCATGCACCTGAGTGATGCCTACTCTGTGGTGGGGATTCCTCTGCTCAGAGTTCC
CTTAGCCAGCAGAACTTACCTCCAGACAGCGGGGCTGCGGTCAACCATAGCGTGGGCTATGGCATCCATTGCAGAAATTAAGGCAGGAGCCCTGGTTTTAGATCCAATGTGTGGCCTTGGGACTATAC
TTGTGGAAGCTGCTGAAGAGTGGCCAGACGTATTTTACGTGGGTGCTGATGTGAGCGACTCGCAGTTACTTGGCGCATGTGACAATCTGAAGGCCGCAGGCCTTGCACACAGGATCGAGTTACTCAAA
GGCTCTGTCGCAGATTTACCACTGCCAGCTCAAAGTGTGGACGTTATTATTTCTGACATTCCATTTGGAAAAAAATTTAAGTTGGGAAAAGACATCAAAAGCATTCTACAAGAAATGGAAAGTTCCAG
GTTCATACAGACAACATAGCACAGTGACTGAG

hide sequence

RefSeq Acc Id:

XM_039112142 ⟹ XP_038968070

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,045 - 19,728,944 (+)	NCBI
mRatBN7.2	6	13,924,742 - 13,976,173 (+)	NCBI

RefSeq Acc Id:

XM_039112143 ⟹ XP_038968071

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,044 - 19,728,944 (+)	NCBI
mRatBN7.2	6	13,924,742 - 13,976,183 (+)	NCBI

RefSeq Acc Id:

XM_039112145 ⟹ XP_038968073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,045 - 19,723,197 (+)	NCBI
mRatBN7.2	6	13,924,742 - 13,970,951 (+)	NCBI

RefSeq Acc Id:

XM_063261827 ⟹ XP_063117897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,045 - 19,728,944 (+)	NCBI

RefSeq Acc Id:

XR_005505504

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	19,677,039 - 19,704,510 (+)	NCBI
mRatBN7.2	6	13,924,742 - 13,952,212 (+)	NCBI


Protein RefSeqs	NP_001012108	(Get FASTA)	NCBI Sequence Viewer
	NP_001156978	(Get FASTA)	NCBI Sequence Viewer
	NP_001397205	(Get FASTA)	NCBI Sequence Viewer
	XP_006239735	(Get FASTA)	NCBI Sequence Viewer
	XP_006239737	(Get FASTA)	NCBI Sequence Viewer
	XP_006239739	(Get FASTA)	NCBI Sequence Viewer
	XP_008762662	(Get FASTA)	NCBI Sequence Viewer
	XP_017449605	(Get FASTA)	NCBI Sequence Viewer
	XP_038968070	(Get FASTA)	NCBI Sequence Viewer
	XP_038968071	(Get FASTA)	NCBI Sequence Viewer
	XP_038968073	(Get FASTA)	NCBI Sequence Viewer
	XP_063117897	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89870	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011000
	ENSRNOP00000011000.5
	ENSRNOP00000071513
	ENSRNOP00000071513.2
	ENSRNOP00000075202
	ENSRNOP00000075202.1
	ENSRNOP00000086376.1

RefSeq Acc Id:	NP_001156978 ⟸ NM_001163506
- Peptide Label:	isoform 1
- UniProtKB:	D4A475 (UniProtKB/TrEMBL), A6H9P7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAGADPGSEPAGGAQFFCTAGRGLEPFLMREVRARLEATQVEYISGKVFFTTCSDLPSMKKLKSAERLFLLIKKQLPITVSSLHRGRLLNEMQRFINDDPGSWLKAISLWRKLLDHDTNGEKVSQG DANPLKRKAGENDSITPKKLKLEEMQVVDKSHGESQQDQPQGPLEQGETLARTDELQEQRLHRASETAAHAQSPEDLTFRISCRCSGSIRKVVTGQEAGRVAGLALMRQFGWKADLRKPDLEIFMHLS DAYSVVGIPLLRVPLASRTYLQTAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQLLGACDNLKAAGLAHRIELLKGSVADLPLPAQSVDVIISDIPFGKKFKLG KDIKSILQEMERVLHVDGVMILLLSEDHHRRLTDCGGSSMPPTSQGNVSDPEMKMLLNPDRTGAPDTASPSQKASSLQSLGRPLPCGSLVPVESFKVSLGKTDAFICKYKKASASGLSPSRCHEPGAH PEVAAMQGSPGLQDSICPGAPSAQPLPVGMAKNTAVR hide sequence

RefSeq Acc Id:	NP_001012108 ⟸ NM_001012108
- Peptide Label:	isoform 2
- UniProtKB:	A0A0G2K0N2 (UniProtKB/TrEMBL), Q5FVM9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAGADPGSEPAGGAQFFCTAGRGLEPFLMREVRARLEATQVEYISGKVFFTTCSDLPSMKKL KSAERLFLLIKKQLPITVSSLHRGRLLNEMQRFINDDPGSWLKAISLWRKLLDHDTNGEKVSQGDANPLKRKAGENDSITPKKLKLEEMQVVDKSHGESQQDQPQGPLEQGETLARTDELQEQRLHRA SETAAHAQSPEDLTFRISCRCSGSIRKVVTGQEAGRVAGLALMRQFGWKADLRKPDLEAGALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQLLGACDNLKAAGLAHRIELLKGSVADLPLPAQS VDVIISDIPFGKKFKLGKDIKSILQEMERNPITASIFKNAHPPSVPVKVAVVEKGDRIPGWRGRPSWLCCRHRQEMPAYRGGSRRSAAR hide sequence

RefSeq Acc Id:	XP_006239735 ⟸ XM_006239673
- Peptide Label:	isoform X1
- UniProtKB:	A6H9P7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAGADPGSEPAGGAQFFCTAGRGLEPFLMREVRARLEATQVEYISGKVFFTTCSDLPSMKKLKSAERLFLLIKKQLPITVSSLHRGRLLNEMQRFINDDPGSWLKAISLWRKLLDHDTNGEKVSQG DANPLKRKAGENDSITPKKLKLEEMQVVDKSHGESQQDQPQGPLEQGETLARTDELQEQRLHRASETAAHAQSPEDLTFRISCRCSGSIRKVVTGQEAGRVAGLALMRQFGWKADLRKPDLEAGALVL DPMCGLGTILVEAAEEWPDVFYVGADVSDSQLLGACDNLKAAGLAHRIELLKGSVADLPLPAQSVDVIISDIPFGKKFKLGKDIKSILQEMERWPLWRKGTEYPAGEGDHPGCAVGIVKRCLPTEVAA EGVLHVDGVMILLLSEDHHRRLTDCGGSSMPPTSQGNVSDPEMKMLLNPDRTGAPDTASPSQKASSLQSLGRPLPCGSLVPVESFKVSLGKTDAFICKYKKASASGLSPSRCHEPGAHPEVAAMQGSP GLQDSICPGAPSAQPLPVGMAKNTAVR hide sequence

RefSeq Acc Id:	XP_006239739 ⟸ XM_006239677
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2K0N2 (UniProtKB/TrEMBL), Q5FVM9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAGADPGSEPAGGAQFFCTAGRGLEPFLMREVRARLEATQVEYISGKVFFTTCSDLPSMKKL KSAERLFLLIKKQLPITVSSLHRGRLLNEMQRFINDDPGSWLKAISLWRKLLDHDTNGEKVSQGDANPLKRKAGENDSITPKKLKLEEMQVVDKSHGESQQDQPQGPLEQGETLARTDELQEQRLHRA SETAAHAQSPEDLTFRISCRCSGSIRKVVTGQEAGRVAGLALMRQFGWKADLRKPDLEAGALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQLLGACDNLKAAGLAHRIELLKGSVADLPLPAQS VDVIISDIPFGKKFKLGKDIKSILQEMERNPITASIFKNAHPPSVPVKVAVVEKGDRIPGWRGRPSWLCCRHRQEMPAYRGGSRRVGPEAHKGRPVKWRESRETKWLKAEAC hide sequence

RefSeq Acc Id:

XP_006239737 ⟸ XM_006239675

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAAAGADPGSEPAGGAQFFCTAGRGLEPFLMREVRARLEATQVEYISGKVFFTTCSDLPSMKKLKSAERLFLLIKKQLPITVSSLHRGRLLNEMQRFINDDPGSWLKAISLWRKLLDHDTNGEKVSQG
DANPLKRKAGENDSITPKKLKLEEMQVVDKSHGESQQDQPQGPLEQGETLARTDELQEQRLHRASETAAHAQSPEDLTFRISCRCSGSIRKVVTGQEAGRVAGLALMRQFGWKADLRKPDLEIFMHLS
DAYSVVGIPLLRVPLASRTYLQTAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQLLGACDNLKAAGLAHRIELLKGSVADLPLPAQSVDVIISDIPFGKKFKLG
KDIKSILQEMESVPVKVAVVEKGDRIPGWRGRPSWLCCRHRQEMPAYRGGSRRVGPEAHKGRPVKWRESRETKWLKAEAC

hide sequence

Protein Domains

Ribosomal RNA large subunit methyltransferase K/L- THUMP

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A475-F1-model_v2	AlphaFold	D4A475	1-549	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13694369

Promoter ID:

EPDNEW_R4894

Type:

multiple initiation site

Name:

Thumpd2_1

Description:

THUMP domain containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	3,794,502 - 3,794,562	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-38547	BioCyc
Ensembl Genes	ENSRNOG00000008291	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011000	ENTREZGENE
	ENSRNOT00000011000.6	UniProtKB/TrEMBL
	ENSRNOT00000084499	ENTREZGENE
	ENSRNOT00000084499.2	UniProtKB/TrEMBL
	ENSRNOT00000087891	ENTREZGENE
	ENSRNOT00000087891.2	UniProtKB/TrEMBL
	ENSRNOT00000100728.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.2130.30	UniProtKB/TrEMBL
	3.40.50.150	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7324079	IMAGE-MGC_LOAD
InterPro	RNA_methylase	UniProtKB/TrEMBL
	SAM-dependent_MTases-like	UniProtKB/TrEMBL
	THUMP	UniProtKB/TrEMBL
KEGG Report	rno:313851	UniProtKB/TrEMBL
MGC_CLONE	MGC:108999	IMAGE-MGC_LOAD
NCBI Gene	313851	ENTREZGENE
PANTHER	THUMP DOMAIN-CONTAINING	UniProtKB/TrEMBL
	THUMP DOMAIN-CONTAINING PROTEIN 2	UniProtKB/TrEMBL
Pfam	UPF0020	UniProtKB/TrEMBL
PhenoGen	Thumpd2	PhenoGen
PROSITE	THUMP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008291	RatGTEx
Superfamily-SCOP	SSF53335	UniProtKB/TrEMBL
	THUMP domain-like	UniProtKB/TrEMBL
UniProt	A0A0G2K0N2	ENTREZGENE
	A0A0G2KA02	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A3I0	ENTREZGENE, UniProtKB/TrEMBL
	A6H9P7	ENTREZGENE, UniProtKB/TrEMBL
	D4A475	ENTREZGENE, UniProtKB/TrEMBL
	Q5FVM9	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A0G2K0N2	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Thumpd2	THUMP domain containing 2	Thumpd2_predicted	THUMP domain containing 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Thumpd2_predicted	THUMP domain containing 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar