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Gene: Rprd1b (regulation of nuclear pre-mRNA domain containing 1B) Rattus norvegicus

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Symbol:

Rprd1b

Name:

regulation of nuclear pre-mRNA domain containing 1B

RGD ID:

1304782

Description:

Predicted to enable RNA polymerase II complex binding activity and identical protein binding activity. Predicted to be involved in several processes, including RNA metabolic process; positive regulation of cell population proliferation; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of transcription preinitiation complex. Orthologous to human RPRD1B (regulation of nuclear pre-mRNA domain containing 1B); INTERACTS WITH 1,2-dimethylhydrazine; bisphenol A; trichloroethene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cell-cycle related and expression-elevated protein in tumor; Crept; LOC311591; regulation of nuclear pre-mRNA domain-containing protein 1B; RGD1304782; similar to RIKEN cDNA 2610304G08 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	167,102,909 - 167,149,184 (+)	NCBI		GRCr8
mRatBN7.2	3	146,682,975 - 146,729,251 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	146,682,922 - 146,786,452 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	150,508,298 - 150,554,579 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	159,008,048 - 159,054,327 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	156,749,375 - 156,795,678 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	154,507,029 - 154,553,312 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	154,507,035 - 154,553,312 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	161,050,861 - 161,097,241 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	148,736,594 - 148,783,743 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	148,642,866 - 148,687,424 (+)	NCBI
Celera	3	145,384,095 - 145,430,271 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rprd1b	Rat	focal epilepsy		ISO	RPRD1B (Homo sapiens)	8554872	ClinVar Annotator: match by term: Focal-onset seizure	ClinVar	PMID:32581362

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rprd1b	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Rprd1b (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of RPRD1B mRNA	CTD	PMID:36331819
Rprd1b	Rat	1,2-dimethylhydrazine	multiple interactions	EXP		6480464	[APC protein affects the susceptibility to 1 and 2-Dimethylhydrazine] which results in increased expression of RPRD1B mRNA	CTD	PMID:27840820
Rprd1b	Rat	1,2-dimethylhydrazine	increases expression	ISO	Rprd1b (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of RPRD1B mRNA	CTD	PMID:22206623
Rprd1b	Rat	2,2',4,4',5,5'-hexachlorobiphenyl	decreases expression	ISO	RPRD1B (Homo sapiens)	6480464	2 more ...	CTD	PMID:23146750
Rprd1b	Rat	2,2',4,4',5,5'-hexachlorobiphenyl	multiple interactions	ISO	Rprd1b (Mus musculus)	6480464	[2 more ...	CTD	PMID:25510870
Rprd1b	Rat	2,2',5,5'-tetrachlorobiphenyl	multiple interactions	ISO	Rprd1b (Mus musculus)	6480464	[2 more ...	CTD	PMID:25510870
Rprd1b	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Rprd1b (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of RPRD1B mRNA	CTD	PMID:21570461
Rprd1b	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	RPRD1B (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of RPRD1B mRNA	CTD	PMID:28628672
Rprd1b	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Rprd1b (Mus musculus)	6480464	bisphenol S results in increased expression of RPRD1B mRNA	CTD	PMID:39298647
Rprd1b	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	Rprd1b (Mus musculus)	6480464	bisphenol S affects the methylation of RPRD1B gene	CTD	PMID:31683443
Rprd1b	Rat	5-fluorouracil	increases expression	ISO	RPRD1B (Homo sapiens)	6480464	Fluorouracil results in increased expression of RPRD1B mRNA	CTD	PMID:15331170
Rprd1b	Rat	5-fluorouracil	affects response to substance	ISO	RPRD1B (Homo sapiens)	6480464	RPRD1B protein affects the susceptibility to Fluorouracil	CTD	PMID:15331170
Rprd1b	Rat	all-trans-retinoic acid	increases expression	ISO	Rprd1b (Mus musculus)	6480464	Tretinoin results in increased expression of RPRD1B mRNA	CTD	PMID:16604517
Rprd1b	Rat	benzo[a]pyrene	decreases expression	ISO	RPRD1B (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of RPRD1B protein	CTD	PMID:20097212
Rprd1b	Rat	benzo[a]pyrene	increases expression	ISO	Rprd1b (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of RPRD1B mRNA	CTD	PMID:22228805
Rprd1b	Rat	bisphenol A	increases expression	ISO	Rprd1b (Mus musculus)	6480464	bisphenol A results in increased expression of RPRD1B mRNA	CTD	PMID:26063408 and PMID:33221593
Rprd1b	Rat	bisphenol A	increases expression	ISO	RPRD1B (Homo sapiens)	6480464	bisphenol A results in increased expression of RPRD1B protein	CTD	PMID:37567409
Rprd1b	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of RPRD1B mRNA	CTD	PMID:30816183
Rprd1b	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of RPRD1B mRNA	CTD	PMID:25181051
Rprd1b	Rat	bisphenol F	multiple interactions	ISO	RPRD1B (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of RPRD1B mRNA	CTD	PMID:28628672
Rprd1b	Rat	bisphenol F	increases expression	ISO	Rprd1b (Mus musculus)	6480464	bisphenol F results in increased expression of RPRD1B mRNA	CTD	PMID:38685157
Rprd1b	Rat	cadmium atom	multiple interactions	ISO	RPRD1B (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of RPRD1B mRNA	CTD	PMID:35301059
Rprd1b	Rat	cadmium dichloride	increases expression	ISO	RPRD1B (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of RPRD1B protein	CTD	PMID:24527689
Rprd1b	Rat	cadmium dichloride	multiple interactions	ISO	RPRD1B (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of RPRD1B mRNA	CTD	PMID:35301059
Rprd1b	Rat	caffeine	decreases phosphorylation	ISO	RPRD1B (Homo sapiens)	6480464	Caffeine results in decreased phosphorylation of RPRD1B protein	CTD	PMID:35688186
Rprd1b	Rat	copper(II) sulfate	increases expression	ISO	RPRD1B (Homo sapiens)	6480464	Copper Sulfate results in increased expression of RPRD1B mRNA	CTD	PMID:19549813
Rprd1b	Rat	coumarin	decreases phosphorylation	ISO	RPRD1B (Homo sapiens)	6480464	coumarin results in decreased phosphorylation of RPRD1B protein	CTD	PMID:35688186
Rprd1b	Rat	dexamethasone	multiple interactions	ISO	RPRD1B (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of RPRD1B mRNA	CTD	PMID:28628672
Rprd1b	Rat	fenthion	decreases expression	ISO	Rprd1b (Mus musculus)	6480464	Fenthion results in decreased expression of RPRD1B mRNA	CTD	PMID:34813904
Rprd1b	Rat	folic acid	decreases expression	ISO	RPRD1B (Homo sapiens)	6480464	Folic Acid results in decreased expression of RPRD1B mRNA	CTD	PMID:21867686
Rprd1b	Rat	FR900359	increases phosphorylation	ISO	RPRD1B (Homo sapiens)	6480464	FR900359 results in increased phosphorylation of RPRD1B protein	CTD	PMID:37730182
Rprd1b	Rat	fulvestrant	increases methylation	ISO	RPRD1B (Homo sapiens)	6480464	Fulvestrant results in increased methylation of RPRD1B gene	CTD	PMID:31601247
Rprd1b	Rat	indometacin	multiple interactions	ISO	RPRD1B (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of RPRD1B mRNA	CTD	PMID:28628672
Rprd1b	Rat	ivermectin	decreases expression	ISO	RPRD1B (Homo sapiens)	6480464	Ivermectin results in decreased expression of RPRD1B protein	CTD	PMID:32959892
Rprd1b	Rat	methidathion	decreases expression	ISO	Rprd1b (Mus musculus)	6480464	methidathion results in decreased expression of RPRD1B mRNA	CTD	PMID:34813904
Rprd1b	Rat	methyl methanesulfonate	increases expression	ISO	RPRD1B (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of RPRD1B mRNA	CTD	PMID:23649840
Rprd1b	Rat	methylparaben	decreases expression	ISO	RPRD1B (Homo sapiens)	6480464	methylparaben results in decreased expression of RPRD1B mRNA	CTD	PMID:31745603
Rprd1b	Rat	paracetamol	affects expression	ISO	Rprd1b (Mus musculus)	6480464	Acetaminophen affects the expression of RPRD1B mRNA	CTD	PMID:17562736
Rprd1b	Rat	paracetamol	decreases expression	ISO	RPRD1B (Homo sapiens)	6480464	Acetaminophen results in decreased expression of RPRD1B mRNA	CTD	PMID:21420995
Rprd1b	Rat	PCB138	multiple interactions	ISO	Rprd1b (Mus musculus)	6480464	[2 more ...	CTD	PMID:25510870
Rprd1b	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Rprd1b (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of RPRD1B mRNA	CTD	PMID:36331819
Rprd1b	Rat	raloxifene	affects response to substance	ISO	RPRD1B (Homo sapiens)	6480464	RPRD1B protein affects the susceptibility to Raloxifene Hydrochloride	CTD	PMID:24452636
Rprd1b	Rat	resveratrol	decreases expression	ISO	Rprd1b (Mus musculus)	6480464	resveratrol results in decreased expression of RPRD1B protein	CTD	PMID:25505154
Rprd1b	Rat	SB 431542	multiple interactions	ISO	RPRD1B (Homo sapiens)	6480464	[LDN 193189 co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with FGF2 protein] results in increased expression of RPRD1B protein	CTD	PMID:37664457
Rprd1b	Rat	sodium arsenite	affects expression	ISO	RPRD1B (Homo sapiens)	6480464	sodium arsenite affects the expression of RPRD1B mRNA	CTD	PMID:29319823
Rprd1b	Rat	titanium dioxide	increases expression	ISO	Rprd1b (Mus musculus)	6480464	titanium dioxide results in increased expression of RPRD1B mRNA	CTD	PMID:29264374
Rprd1b	Rat	titanium dioxide	decreases methylation	ISO	Rprd1b (Mus musculus)	6480464	titanium dioxide results in decreased methylation of RPRD1B promoter	CTD	PMID:35295148
Rprd1b	Rat	titanium dioxide	affects methylation	ISO	Rprd1b (Mus musculus)	6480464	titanium dioxide affects the methylation of RPRD1B gene	CTD	PMID:35295148
Rprd1b	Rat	trichloroethene	increases methylation	EXP		6480464	Trichloroethylene results in increased methylation of RPRD1B gene	CTD	PMID:27618143
Rprd1b	Rat	triptonide	affects expression	ISO	Rprd1b (Mus musculus)	6480464	triptonide affects the expression of RPRD1B mRNA	CTD	PMID:33045310
Rprd1b	Rat	troglitazone	decreases expression	ISO	Rprd1b (Mus musculus)	6480464	troglitazone results in decreased expression of RPRD1B mRNA	CTD	PMID:28973697
Rprd1b	Rat	valproic acid	affects expression	ISO	RPRD1B (Homo sapiens)	6480464	Valproic Acid affects the expression of RPRD1B mRNA	CTD	PMID:25979313
Rprd1b	Rat	valproic acid	increases methylation	ISO	RPRD1B (Homo sapiens)	6480464	Valproic Acid results in increased methylation of RPRD1B gene	CTD	PMID:29501571
Rprd1b	Rat	valproic acid	decreases expression	ISO	RPRD1B (Homo sapiens)	6480464	Valproic Acid results in decreased expression of RPRD1B mRNA and Valproic Acid results in decreased expression of RPRD1B protein	CTD	PMID:29501571
Rprd1b	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of RPRD1B mRNA	CTD	PMID:23869203

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rprd1b	Rat	mRNA 3'-end processing	involved_in	IBA	PANTHER:PTN000279186 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Rprd1b	Rat	mRNA 3'-end processing	involved_in	IEA	UniRule:UR001628777	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Rprd1b	Rat	positive regulation of cell population proliferation	involved_in	ISO	RPRD1B (Homo sapiens)	1624291	PMID:22264791	RGD	PMID:22264791
Rprd1b	Rat	positive regulation of cell population proliferation	involved_in	IEA	UniProtKB:Q9NQG5 and ensembl:ENSP00000362532	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rprd1b	Rat	positive regulation of transcription by RNA polymerase II	involved_in	ISO	RPRD1B (Homo sapiens)	1624291	PMID:22264791	RGD	PMID:22264791
Rprd1b	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q9NQG5 and ensembl:ENSP00000362532	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rprd1b	Rat	regulation of cell cycle process	involved_in	ISO	RPRD1B (Homo sapiens)	1624291	PMID:22264791	RGD	PMID:22264791
Rprd1b	Rat	regulation of cell cycle process	involved_in	IEA	UniProtKB:Q9NQG5 and ensembl:ENSP00000362532	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rprd1b	Rat	RNA polymerase II promoter clearance	involved_in	ISO	RPRD1B (Homo sapiens)	1624291	PMID:22231121	RGD	PMID:22231121
Rprd1b	Rat	RNA polymerase II promoter clearance	involved_in	IEA	UniProtKB:Q9NQG5 and ensembl:ENSP00000362532	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rprd1b	Rat	nucleoplasm	located_in	IEA	UniProtKB:Q9NQG5 and ensembl:ENSP00000362532	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rprd1b	Rat	nucleoplasm	located_in	ISO	RPRD1B (Homo sapiens)	1624291		RGD	GO_REF:0000052
Rprd1b	Rat	nucleus	located_in	ISO	RPRD1B (Homo sapiens)	1624291	PMID:22231121 and PMID:22264791	RGD	PMID:22231121 and PMID:22264791
Rprd1b	Rat	nucleus	located_in	IEA	UniProtKB:Q9NQG5 and ensembl:ENSP00000362532	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rprd1b	Rat	transcription preinitiation complex	part_of	ISO	RPRD1B (Homo sapiens)	1624291	PMID:22231121	RGD	PMID:22231121
Rprd1b	Rat	transcription preinitiation complex	part_of	IEA	UniProtKB:Q9NQG5 and ensembl:ENSP00000362532	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rprd1b	Rat	identical protein binding	enables	ISO	RPRD1B (Homo sapiens)	1624291	UniProtKB:Q9NQG5 more ...	RGD	PMID:24997600 and PMID:32296183
Rprd1b	Rat	identical protein binding	enables	IEA	UniProtKB:Q9NQG5 and ensembl:ENSP00000362532	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rprd1b	Rat	protein binding	enables	ISO	RPRD1B (Homo sapiens)	1624291	UniProtKB:A5D8V6 more ...	RGD	PMID:22264791 more ...
Rprd1b	Rat	RNA polymerase II C-terminal domain binding	enables	IEA	InterPro:IPR047882	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rprd1b	Rat	RNA polymerase II complex binding	enables	ISO	RPRD1B (Homo sapiens)	1624291	PMID:22264791	RGD	PMID:22264791
Rprd1b	Rat	RNA polymerase II complex binding	enables	IEA	UniProtKB:Q9NQG5 and ensembl:ENSP00000362532	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rprd1b	Rat	RNA polymerase II complex binding	enables	IEA	UniRule:UR001628777	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Rprd1b	Rat	RNA polymerase II complex binding	enables	IBA	PANTHER:PTN000279186 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Rprd1b	Rat	RNA polymerase II CTD heptapeptide repeat phosphatase activity	enables	IEA	UniRule:UR001628777	1600115	GO_REF:0000104	UniProt	GO_REF:0000104

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:22231121	PMID:22264791	PMID:24997600	PMID:31505169

Rprd1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	167,102,909 - 167,149,184 (+)	NCBI		GRCr8
mRatBN7.2	3	146,682,975 - 146,729,251 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	146,682,922 - 146,786,452 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	150,508,298 - 150,554,579 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	159,008,048 - 159,054,327 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	156,749,375 - 156,795,678 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	154,507,029 - 154,553,312 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	154,507,035 - 154,553,312 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	161,050,861 - 161,097,241 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	148,736,594 - 148,783,743 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	148,642,866 - 148,687,424 (+)	NCBI
Celera	3	145,384,095 - 145,430,271 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

RPRD1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	38,033,746 - 38,092,364 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	38,033,725 - 38,127,780 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	36,662,148 - 36,720,766 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	36,095,362 - 36,154,180 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	36,095,466 - 36,154,627	NCBI
Celera	20	33,369,018 - 33,427,835 (+)	NCBI		Celera
Cytogenetic Map	20	q11.23	NCBI
HuRef	20	33,397,715 - 33,456,630 (+)	NCBI		HuRef
CHM1_1	20	36,564,987 - 36,624,087 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	39,758,090 - 39,816,692 (+)	NCBI		T2T-CHM13v2.0

Rprd1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	157,870,395 - 157,920,127 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	157,870,417 - 157,974,217 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	158,028,475 - 158,078,207 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	158,028,497 - 158,132,297 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	157,854,530 - 157,903,056 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	157,720,235 - 157,768,761 (+)	NCBI		MGSCv36	mm8
Celera	2	163,971,143 - 164,021,857 (+)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	78.72	NCBI

Rprd1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	18,561,799 - 18,676,243 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	18,622,018 - 18,676,243 (-)	NCBI	ChiLan1.0	ChiLan1.0

RPRD1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	43,760,219 - 43,833,085 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	43,753,317 - 43,826,183 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	34,354,626 - 34,426,333 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	35,467,980 - 35,532,113 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	35,467,980 - 35,532,113 (+)	Ensembl	panpan1.1		panPan2

RPRD1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	26,552,487 - 26,604,586 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	26,552,859 - 26,602,129 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	26,198,032 - 26,250,191 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	27,248,879 - 27,301,053 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	27,248,916 - 27,301,049 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	26,523,441 - 26,575,560 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	26,630,968 - 26,683,267 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	27,118,995 - 27,171,089 (+)	NCBI		UU_Cfam_GSD_1.0

Rprd1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	175,446,356 - 175,503,787 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	3,245,687 - 3,303,185 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	3,245,697 - 3,303,181 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPRD1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	41,094,032 - 41,176,855 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	41,093,970 - 41,172,617 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	46,508,130 - 46,564,341 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPRD1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	25,659,232 - 25,717,022 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	25,659,236 - 25,716,879 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	74,507,065 - 74,564,694 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rprd1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624842	1,509,117 - 1,630,193 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624842	1,571,112 - 1,629,800 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rprd1b
153 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	847
Count of miRNA genes:	331
Interacting mature miRNAs:	420
Transcripts:	ENSRNOT00000017265
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	145925360	166177555	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145925360	166177555	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145956084	157309487	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	145925360	166177555	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	145925360	166177555	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	145925360	166177555	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	145925360	166177555	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141339236	155617360	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	145956084	161299569	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	140069424	146976080	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	145925360	166177555	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat

RH129760

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	146,729,037 - 146,729,246 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	154,553,099 - 154,553,307	NCBI	Rnor6.0
Rnor_5.0	3	161,050,866 - 161,051,074	UniSTS	Rnor5.0
RGSC_v3.4	3	148,783,530 - 148,783,738	UniSTS	RGSC3.4
Celera	3	145,430,058 - 145,430,266	UniSTS
RH 3.4 Map	3	1355.6	UniSTS
Cytogenetic Map	3	q42	UniSTS

RH126524

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	146,729,068 - 146,729,174 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	154,553,130 - 154,553,235	NCBI	Rnor6.0
Rnor_5.0	3	161,050,938 - 161,051,043	UniSTS	Rnor5.0
RGSC_v3.4	3	148,783,561 - 148,783,666	UniSTS	RGSC3.4
Celera	3	145,430,089 - 145,430,194	UniSTS
Cytogenetic Map	3	q42	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001098727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK365545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY310142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY565371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017265 ⟹ ENSRNOP00000017265

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	146,682,922 - 146,729,247 (+)	Ensembl
Rnor_6.0 Ensembl	3	154,507,035 - 154,553,312 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109927 ⟹ ENSRNOP00000091603

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	146,682,922 - 146,786,452 (+)	Ensembl

RefSeq Acc Id:

NM_001098727 ⟹ NP_001092197

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	167,102,909 - 167,149,184 (+)	NCBI
mRatBN7.2	3	146,682,975 - 146,729,251 (+)	NCBI
Rnor_6.0	3	154,507,035 - 154,553,312 (+)	NCBI
Rnor_5.0	3	161,050,861 - 161,097,241 (-)	NCBI
RGSC_v3.4	3	148,736,594 - 148,783,743 (+)	RGD
Celera	3	145,384,095 - 145,430,271 (+)	RGD

Sequence:

show sequence

TTTTCGGTGTTCGAGGACCTGGATTTGTTCTCTCGGCCTGTTCGGTTCGAAGTCCTCTCAACAAGGCCCAAGGAGAGTGCTGCCTCCTAAGGGTCGTTTTCCTCCGGCTGCGAACCTCTCGGCGCCCG
GCGGTGGCCCTTGCCCTTTGACCCCGTGGCGGCGGGGTGAGAGGTCGGGTGGCCATCTTGTGGCGGCGGCGCGGGCGGCTGTTACTGCGGAGACCTGTCCCCTCCCCCCACCTGGTACCCCTAGCTGT
CTGTCAGTCGGCGGAGAGCCGTGCAGCCTGTCAGCGGAGGCCTGGGCTGAGTGCGGTCGCTTTCCCCGACTCATCGGGCGGCCCAGGCCGTTCCTTACCACCGCCACCATGTCCTCCTTCTCAGAGTC
GGCGTTGGAAAAGAAGCTCTCAGAGCTGAGCAACTCTCAGCAGAGTGTGCAGACCCTATCCCTGTGGCTCATCCACCACCGCAAGCACGCAGGACCCATCGTCTCCGTGTGGCACCGCGAGCTCCGCA
AAGCCAAATCAAATAGAAAGCTTACTTTTCTCTACTTAGCAAATGATGTCATCCAAAACAGTAAAAGGAAAGGACCTGAGTTCACGAGAGAATTTGAATCTGTCCTTGTGGATGCTTTTTCTCATGTT
GCCAGAGAGGCAGATGAAGGCTGTAAAAAACCTTTAGAAAGATTGCTGAACATCTGGCAAGAACGAAGTGTGTATGGCGGCGAGTTCATACAGCAGCTGAAGCTGTCTATGGAGGACTCCAAGAGCCC
TCCCCCCAAAGCAGCGGAAGAGAAGAAGTCTCTAAAACGAACTTTTCAGCAGATACAGGAGGAGGAAGATGATGACTACCCTGGAAGCTACTCTCCCCAAGATCCTTCTGCAGGGCCCCTCTTGACTG
AGGAGTTAATCAAAGCTTTGCAGGATCTGGAAAATGCAGCATCAGGGGATGCTACTGTTCGACAGAAGATTGCTTCCCTGCCCCAGGAAGTGCAGGATGTGTCCCTGCTGGAAAAAATTACAGACAAA
GAGGCAGCTGAACGTCTTTCAAAAACAGTAGATGAAGCATGTCTGTTACTAGCGGAATATAACGGGCGCCTGGCAGCGGAACTGGAAGACCGGCGCCAGCTGGCTCGGATGCTGGTGGAGTACACCCA
GAACCAAAAAGAGGTTTTGTCAGAAAAGGAGAAAAAGCTAGAAGAATATAAACAGAAGCTTGCTCGAGTAACCCAGGTCCGCAAGGAACTCAAGTCCCACATTCAGAGCTTGCCGGACCTCTCACTGC
TGCCTAATGTCACAGGGGGCCTGGCACCTCTGCCCTCTGCTGGTGACCTCTTTTCAACTGACTAAGACAGGTATCATGCTCCAGGTTCCCGTGTGTGCCAGAAAAAAGAAGCGAGTCACTGTTGGAGA
CAGTCCCCTGCCCCGGCTCCTTCTCTTCAGCCAGCATCTGCCTCAGTAATGAAGCGGGGAACTCTGACTTCTCACTCTCCTCCGGCTCCCTCCTGAGCATGGTTCAGAACCGTGCAGATGGACTCAGT
TTTGATTCGTATTTGCTAAGAATACAGACTCTTCCTCCCACTCACGTTCTCTTCCACCGCTGCGTTTCCATTCTTAGCTCTCTTACACCCACAAGCCATGAAAATCATGTGTACTTCTGGAAGCTTTT
GAGATAAGCTTGCCTCGGTGACAGCACATGTCATGGAAGTCTGAGCTGGCCTTGACCAGGTTCAGAACAGGCTTCCAGTGAGGGCTGGGCTGCAGGAATTGGCTTTCCTGGCCACCCTCTGCTCACAA
GGTCGGCAGCACAGCTTGCCACAAAGAGATTGCCAAATTGCTGACATCTCCCGACCTGAGCACGTCTAGTAGAGAGGGTAGGTGTGTGTGTCTGTGAACGTTCTAGAGAATCTGCAATAAGGTTCAAA
GCTGATCTGAGACCTAGAGTACAGGTACAGAGTGGCAGGGGTCACGAGTCGTTGCCTGGCTTCTCTCCACAGCCTTCCCTGCCACACTTCTCAAGGTTCCCGGTTTCAGAGCACCTTCCTAAAGCAGG
GCCCCTGCCCCTGGTGCTGGGAAGGGAGCTGTTGGGACAGTGCGCCCCGAATAGCGCACCCCAGGCTGATGCACCTCCACAGCCCACAGCTGGAGTCCGGGCCTTCCCCCTCCCACTGGGGCTGGAGC
TTACAGTTAGAGCACCATGTGGACATACATCCCCAGCATGGCGGCTAACCTTGAACATCTACAGCTAGGACACTGAGCCTGCCAGCATCACGCTGCTCTCTGCATCCATGCTCCCACGCAGAGAGGAG
AACTCATACAAAGACCTCTCCTCCAGCAGGGGAAGGAACAGAGGGAGACTGATTGGGGTTTTAATTCCATTATCATGCCAGCTGACCTTGTGACCGAATGATGTGGTTGAGATTTTTACGTCTCGTAA
AGATTGGGCCTGCACCTGGAAGTGATTGTAATCTGGCAGGCTTGTTTGACATTGGAAAGGGCAGAAACCCTTTTGTCCTCCTAGTGTAATAGGAATTGTTGCCTGGAGCTGAAGTCCAAAAGCTGTAA
GAAGGAATTCAGTGAAGGGACCTTGAGAAGCTTCATTACTTTAAGTTGCTGTTTTCAGGATCACCAAAAAAGCACACATCGTTTTTTACATGTTAAAGCAAACCTGTGTCATTGTAGGCAGGCTTCAG
TCTGAGAAGCCACCCTGCCTGCTATGAGGTGAGACTCAGTTCCACTGTGTCCAGCCTGGTCACTGTGGAAACTGTTATCACATCGAATGCAGGCTGCTGTTTGCTTGTTCACTCTGCCTCTTCTGTCA
GCATCCTTTTCTCCAGAGGCTACAGGACAGCACTGACTTGGGTGAAATCCCGTCTCTGCTGCGGAACACCTCCCCACACACAGCGCCACTATACTGTCACGTGCACACCATCCTCAACTCCTCCCCCA
GACACTGCTTTCCCACGAGACAGACAAAAGATTGTAGCGGCTCTGCTCTGATGACAACTTGATGGAGTCGGCTCAGTGCTGTGTTTTATTCTTTGGAGTCTGACAGCAATCAGTGTGTAACTCTTAGA
GCAGGATCAAGACACGAACCAGTAGCGATTATGTAAATGAATGTGTTGGTCTCTTAACACCAGTTGCTAGCAGACTTCTGTAAGGAAGTTAGTTTTGTTTTAATGAAATGCTTCAGTTTTTTAATCTT
TCTTGTTGTCTGCCTCTCCTTCCTCCCCTCCCTCAGTCTCCCAACTGTGTGCTTACTTCCCTTGTTTAACTTAAGTGAAACTTTTGTCCCTGAGAGTTGATCTGGTGGGTGGGGTGGGTGACTTCTGG
TTTTGTGTTTCTTTAGGGGATCCATAGGCCTCAAGGATCTTTCCTTTAGGGTCATATTCCTCAGAAAGTCTTCAGTCTTTCTTTGTTTTTGTTTTGTTTTTCCTAAAGGATATTTTTAAAGCTTAAAT
TTGTATATTAATTTAGGACTTTATTTAGAAGTATAGGCTGCCATTGGTGACAGCAGTATATTCTGAAATGTCTCATAGATATATATTTTTGAATAAAGATGGTGTTGTTGAACAACA

hide sequence

RefSeq Acc Id:

XM_006235412 ⟹ XP_006235474

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	167,103,273 - 167,149,184 (+)	NCBI
mRatBN7.2	3	146,683,302 - 146,729,251 (+)	NCBI
Rnor_6.0	3	154,507,029 - 154,553,312 (+)	NCBI
Rnor_5.0	3	161,050,861 - 161,097,241 (-)	NCBI

Sequence:

show sequence

AAGCGCTTTTCGGTGTTCGAGGACCTGGATTTGTTCTCTCGGCCTGTTCGGTTCGAAGTCCTCTCAACAAGGCCCAAGGAGAGTGCTGCCTCCTAAGGGTCGTTTTCCTCCGGCTGCGAACCTCTCGG
CGCCCGGCGGTGGCCCTTGCCCTTTGACCCCGTGGCGGCGGGGTGAGAGGTCGGGTGGCCATCTTGTGGCGGCGGCGCGGGCGGCTGTTACTGCGGAGACCTGTCCCCTCCCCCCACCTGGTACCCCT
AGCTGTCTGTCAGTCGGCGGAGAGCCGTGCAGCCTGTCAGCGGAGGCCTGGGCTGAGTGCGGTCGCTTTCCCCGACTCATCGGGCGGCCCAGGCCGTTCCTTACCACCGCCACCATGTCCTCCTTCTC
AGAGTCGGCGTTGGAAAAGAAGCTCTCAGAGCTGAGCAACTCTCAGCAGAGTGTGCAGACCCTATCCCTGTGGCTCATCCACCACCGCAAGCACGCAGGACCCATCGTCTCCGTGTGGCACCGCGAGC
TCCGCAAAGCCAAATCAAATAGAAAGCTTACTTTTCTCTACTTAGCAAATGATGTCATCCAAAACAGTAAAAGGAAAGGACCTGAGTTCACGAGAGAATTTGAATCTGTCCTTGTGGATGCTTTTTCT
CATGTTGCCAGAGAGGCAGATGAAGGCTGTAAAAAACCTTTAGAAAGATTGCTGAACATCTGGCAAGAACGAAGTGTGTATGGCGGCGAGTTCATACAGCAGCTGAAGCTGTCTATGGAGGACTCCAA
GAGCCCTCCCCCCAAAGCGGAAGAGAAGAAGTCTCTAAAACGAACTTTTCAGCAGATACAGGAGGAGGAAGATGATGACTACCCTGGAAGCTACTCTCCCCAAGATCCTTCTGCAGGGCCCCTCTTGA
CTGAGGAGTTAATCAAAGCTTTGCAGGATCTGGAAAATGCAGCATCAGGGGATGCTACTGTTCGACAGAAGATTGCTTCCCTGCCCCAGGAAGTGCAGGATGTGTCCCTGCTGGAAAAAATTACAGAC
AAAGAGGCAGCTGAACGTCTTTCAAAAACAGTAGATGAAGCATGTCTGTTACTAGCGGAATATAACGGGCGCCTGGCAGCGGAACTGGAAGACCGGCGCCAGCTGGCTCGGATGCTGGTGGAGTACAC
CCAGAACCAAAAAGAGGTTTTGTCAGAAAAGGAGAAAAAGCTAGAAGAATATAAACAGAAGCTTGCTCGAGTAACCCAGGTCCGCAAGGAACTCAAGTCCCACATTCAGAGCTTGCCGGACCTCTCAC
TGCTGCCTAATGTCACAGGGGGCCTGGCACCTCTGCCCTCTGCTGGTGACCTCTTTTCAACTGACTAAGACAGGTATCATGCTCCAGGTTCCCGTGTGTGCCAGAAAAAAGAAGCGAGTCACTGTTGG
AGACAGTCCCCTGCCCCGGCTCCTTCTCTTCAGCCAGCATCTGCCTCAGTAATGAAGCGGGGAACTCTGACTTCTCACTCTCCTCCGGCTCCCTCCTGAGCATGGTTCAGAACCGTGCAGATGGACTC
AGTTTTGATTCGTATTTGCTAAGAATACAGACTCTTCCTCCCACTCACGTTCTCTTCCACCGCTGCGTTTCCATTCTTAGCTCTCTTACACCCACAAGCCATGAAAATCATGTGTACTTCTGGAAGCT
TTTGAGATAAGCTTGCCTCGGTGACAGCACATGTCATGGAAGTCTGAGCTGGCCTTGACCAGGTTCAGAACAGGCTTCCAGTGAGGGCTGGGCTGCAGGAATTGGCTTTCCTGGCCACCCTCTGCTCA
CAAGGTCGGCAGCACAGCTTGCCACAAAGAGATTGCCAAATTGCTGACATCTCCCGACCTGAGCACGTCTAGTAGAGAGGGTAGGTGTGTGTGTCTGTGAACGTTCTAGAGAATCTGCAATAAGGTTC
AAAGCTGATCTGAGACCTAGAGTACAGGTACAGAGTGGCAGGGGTCACGAGTCGTTGCCTGGCTTCTCTCCACAGCCTTCCCTGCCACACTTCTCAAGGTTCCCGGTTTCAGAGCACCTTCCTAAAGC
AGGGCCCCTGCCCCTGGTGCTGGGAAGGGAGCTGTTGGGACAGTGCGCCCCGAATAGCGCACCCCAGGCTGATGCACCTCCACAGCCCACAGCTGGAGTCCGGGCCTTCCCCCTCCCACTGGGGCTGG
AGCTTACAGTTAGAGCACCATGTGGACATACATCCCCAGCATGGCGGCTAACCTTGAACATCTACAGCTAGGACACTGAGCCTGCCAGCATCACGCTGCTCTCTGCATCCATGCTCCCACGCAGAGAG
GAGAACTCATACAAAGACCTCTCCTCCAGCAGGGGAAGGAACAGAGGGAGACTGATTGGGGTTTTAATTCCATTATCATGCCAGCTGACCTTGTGACCGAATGATGTGGTTGAGATTTTTACGTCTCG
TAAAGATTGGGCCTGCACCTGGAAGTGATTGTAATCTGGCAGGCTTGTTTGACATTGGAAAGGGCAGAAACCCTTTTGTCCTCCTAGTGTAATAGGAATTGTTGCCTGGAGCTGAAGTCCAAAAGCTG
TAAGAAGGAATTCAGTGAAGGGACCTTGAGAAGCTTCATTACTTTAAGTTGCTGTTTTCAGGATCACCAAAAAAGCACACATCGTTTTTTACATGTTAAAGCAAACCTGTGTCATTGTAGGCAGGCTT
CAGTCTGAGAAGCCACCCTGCCTGCTATGAGGTGAGACTCAGTTCCACTGTGTCCAGCCTGGTCACTGTGGAAACTGTTATCACATCGAATGCAGGCTGCTGTTTGCTTGTTCACTCTGCCTCTTCTG
TCAGCATCCTTTTCTCCAGAGGCTACAGGACAGCACTGACTTGGGTGAAATCCCGTCTCTGCTGCGGAACACCTCCCCACACACAGCGCCACTATACTGTCACGTGCACACCATCCTCAACTCCTCCC
CCAGACACTGCTTTCCCACGAGACAGACAAAAGATTGTAGCGGCTCTGCTCTGATGACAACTTGATGGAGTCGGCTCAGTGCTGTGTTTTATTCTTTGGAGTCTGACAGCAATCAGTGTGTAACTCTT
AGAGCAGGATCAAGACACGAACCAGTAGCGATTATGTAAATGAATGTGTTGGTCTCTTAACACCAGTTGCTAGCAGACTTCTGTAAGGAAGTTAGTTTTGTTTTAATGAAATGCTTCAGTTTTTTAAT
CTTTCTTGTTGTCTGCCTCTCCTTCCTCCCCTCCCTCAGTCTCCCAACTGTGTGCTTACTTCCCTTGTTTAACTTAAGTGAAACTTTTGTCCCTGAGAGTTGATCTGGTGGGTGGGGTGGGTGACTTC
TGGTTTTGTGTTTCTTTAGGGGATCCATAGGCCTCAAGGATCTTTCCTTTAGGGTCATATTCCTCAGAAAGTCTTCAGTCTTTCTTTGTTTTTGTTTTGTTTTTCCTAAAGGATATTTTTAAAGCTTA
AATTTGTATATTAATTTAGGACTTTATTTAGAAGTATAGGCTGCCATTGGTGACAGCAGTATATTCTGAAATGTCTCATAGATATATATTTTTGAATAAAGATGGTGTTGTTGAACAACA

hide sequence

RefSeq Acc Id:

XM_039105089 ⟹ XP_038961017

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	167,103,273 - 167,149,184 (+)	NCBI
mRatBN7.2	3	146,683,205 - 146,727,016 (+)	NCBI

RefSeq Acc Id:

XM_039105091 ⟹ XP_038961019

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	167,103,314 - 167,149,184 (+)	NCBI
mRatBN7.2	3	146,683,356 - 146,729,251 (+)	NCBI

RefSeq Acc Id:

XM_039105092 ⟹ XP_038961020

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	167,117,517 - 167,149,184 (+)	NCBI
mRatBN7.2	3	146,697,587 - 146,729,251 (+)	NCBI


Protein RefSeqs	NP_001092197	(Get FASTA)	NCBI Sequence Viewer
	XP_006235474	(Get FASTA)	NCBI Sequence Viewer
	XP_038961017	(Get FASTA)	NCBI Sequence Viewer
	XP_038961019	(Get FASTA)	NCBI Sequence Viewer
	XP_038961020	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68699	(Get FASTA)	NCBI Sequence Viewer
	EDL96660	(Get FASTA)	NCBI Sequence Viewer
	EDL96661	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017265
	ENSRNOP00000017265.4
	ENSRNOP00000091603
	ENSRNOP00000091603.1

RefSeq Acc Id:

NP_001092197 ⟸ NM_001098727

- UniProtKB:

B5DEK0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLS
MEDSKSPPPKAAEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLAR
MLVEYTQNQKEVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPDLSLLPNVTGGLAPLPSAGDLFSTD

hide sequence

RefSeq Acc Id:	XP_006235474 ⟸ XM_006235412
- Peptide Label:	isoform X1
- UniProtKB:	A6JWU8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLS MEDSKSPPPKAEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARM LVEYTQNQKEVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPDLSLLPNVTGGLAPLPSAGDLFSTD hide sequence

Ensembl Acc Id:

ENSRNOP00000017265 ⟸ ENSRNOT00000017265

RefSeq Acc Id:	XP_038961017 ⟸ XM_039105089
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AFR9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961019 ⟸ XM_039105091
- Peptide Label:	isoform X3

Protein Domains

CID

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DEK0-F1-model_v2	AlphaFold	B5DEK0	1-326	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13692616

Promoter ID:

EPDNEW_R3141

Type:

initiation region

Name:

Rprd1b_1

Description:

regulation of nuclear pre-mRNA domain containing 1B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	154,507,028 - 154,507,088	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-47040	BioCyc
Ensembl Genes	ENSRNOG00000012923	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017265	ENTREZGENE
	ENSRNOT00000017265.7	UniProtKB/TrEMBL
	ENSRNOT00000109927	ENTREZGENE
	ENSRNOT00000109927.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.90	UniProtKB/TrEMBL
	6.10.250.2560	UniProtKB/TrEMBL
InterPro	CREPT	UniProtKB/TrEMBL
	ENTH_VHS	UniProtKB/TrEMBL
	RNA_polymerase_II_lsu_CTD	UniProtKB/TrEMBL
	RPRD1B_CID	UniProtKB/TrEMBL
KEGG Report	rno:311591	UniProtKB/TrEMBL
NCBI Gene	311591	ENTREZGENE
PANTHER	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	UniProtKB/TrEMBL
	REGULATION OF NUCLEAR PRE-MRNA DOMAIN-CONTAINING PROTEIN 1B	UniProtKB/TrEMBL
Pfam	CREPT	UniProtKB/TrEMBL
	DUF618	UniProtKB/TrEMBL
PhenoGen	Rprd1b	PhenoGen
PROSITE	CID	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012923	RatGTEx
SMART	RPR	UniProtKB/TrEMBL
Superfamily-SCOP	ENTH_VHS	UniProtKB/TrEMBL
UniProt	A0A8I6AFR9	ENTREZGENE, UniProtKB/TrEMBL
	A6JWU8	ENTREZGENE, UniProtKB/TrEMBL
	B5DEK0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-09	Rprd1b	regulation of nuclear pre-mRNA domain containing 1B	RGD1304782	similar to RIKEN cDNA 2610304G08 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1304782	similar to RIKEN cDNA 2610304G08 gene	RGD1304782_predicted	similar to RIKEN cDNA 2610304G08 gene (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1304782_predicted	similar to RIKEN cDNA 2610304G08 gene (predicted)	LOC311591_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC311591_predicted	similar to RIKEN cDNA 2610304G08 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar