LOC103692025 (uncharacterized LOC103692025) - Rat Genome Database

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Gene: LOC103692025 (uncharacterized LOC103692025) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC103692025
Name: uncharacterized LOC103692025
RGD ID: 9159670
Description: Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2411,836,200 - 12,379,126 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl411,837,994 - 12,379,102 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.048,369,553 - 8,994,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera47,447,472 - 7,991,903 (-)NCBICelera
Cytogenetic Map4q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Variants

.
Variants in LOC103692025
3476 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000094353   ⟹   ENSRNOP00000096741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl411,837,994 - 12,379,102 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104480   ⟹   ENSRNOP00000096964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl411,837,994 - 12,379,102 (-)Ensembl
RefSeq Acc Id: XM_017593098   ⟹   XP_017448587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2411,838,311 - 12,378,948 (-)NCBI
Rnor_6.048,369,553 - 8,994,870 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593101   ⟹   XP_017448590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2412,153,964 - 12,379,126 (-)NCBI
Rnor_6.048,690,191 - 8,994,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108983   ⟹   XP_038964911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2411,836,200 - 12,379,114 (-)NCBI
RefSeq Acc Id: XM_039108984   ⟹   XP_038964912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2411,836,200 - 12,379,122 (-)NCBI
RefSeq Acc Id: XM_039108985   ⟹   XP_038964913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2411,836,200 - 12,379,122 (-)NCBI
RefSeq Acc Id: XP_017448587   ⟸   XM_017593098
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017448590   ⟸   XM_017593101
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_038964913   ⟸   XM_039108985
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038964912   ⟸   XM_039108984
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038964911   ⟸   XM_039108983
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000096741   ⟸   ENSRNOT00000094353
Ensembl Acc Id: ENSRNOP00000096964   ⟸   ENSRNOT00000104480

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-46003 BioCyc
Ensembl Genes ENSRNOG00000066703 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000094353 ENTREZGENE
  ENSRNOT00000094353.1 UniProtKB/TrEMBL
  ENSRNOT00000104480 ENTREZGENE
  ENSRNOT00000104480.1 UniProtKB/TrEMBL
InterPro LHFPL UniProtKB/TrEMBL
NCBI Gene LOC103692025 ENTREZGENE
PANTHER LHFPL TETRASPAN SUBFAMILY MEMBER 3 PROTEIN UniProtKB/TrEMBL
  PTHR12489 UniProtKB/TrEMBL
Pfam L_HMGIC_fpl UniProtKB/TrEMBL
PhenoGen LOC103692025 PhenoGen
RatGTEx ENSRNOG00000066703 RatGTEx
UniProt A0A8I6AT41_RAT UniProtKB/TrEMBL
  A0A8I6ATK6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-25 LOC103692025  uncharacterized LOC103692025      Symbol and Name status set to provisional 70820 PROVISIONAL