Slc2a9 (solute carrier family 2 member 9) - Rat Genome Database

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Pathways
Gene: Slc2a9 (solute carrier family 2 member 9) Chinchilla lanigera
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Symbol: Slc2a9
Name: solute carrier family 2 member 9
RGD ID: 9061970
Description: ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); fructose transmembrane transporter activity (ortholog); urate transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); fructose transmembrane transport (ortholog); urate metabolic process (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); esophageal cancer (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 2 (facilitated glucose transporter), member 9; solute carrier family 2, facilitated glucose transporter member 9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555145,479,585 - 5,625,223 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049555145,479,585 - 5,625,328 (-)NCBIChiLan1.0ChiLan1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc2a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555145,479,585 - 5,625,223 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049555145,479,585 - 5,625,328 (-)NCBIChiLan1.0ChiLan1.0
SLC2A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3849,771,025 - 10,040,270 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl49,771,148 - 10,054,936 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh3749,827,848 - 10,041,894 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3649,436,946 - 9,650,970 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3449,504,117 - 9,699,383NCBI
Celera410,310,714 - 10,524,222 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef49,162,269 - 9,375,568 (-)NCBIHuRef
CHM1_149,825,801 - 10,040,024 (-)NCBICHM1_1
T2T-CHM13v2.049,770,809 - 10,039,839 (-)NCBIT2T-CHM13v2.0
Slc2a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,506,616 - 38,660,488 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,506,616 - 38,660,486 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38538,349,272 - 38,503,147 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,349,273 - 38,503,143 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37538,740,512 - 38,893,391 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36538,637,555 - 38,790,401 (-)NCBIMGSCv36mm8
Celera535,802,909 - 35,950,476 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.43NCBI
Slc2a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,540,649 - 76,674,277 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1476,540,571 - 76,674,277 (+)EnsemblGRCr8
mRatBN7.21472,328,334 - 72,461,981 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,328,320 - 72,461,981 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1476,790,316 - 76,903,628 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01478,031,186 - 78,144,522 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01474,471,251 - 74,584,577 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1477,090,232 - 77,203,427 (+)NCBI
Lyon_Normotensive1475,718,990 - 75,832,178 (+)NCBI
Lyon_Hypertensive1477,237,796 - 77,350,985 (+)NCBI
F344_StmMcwi1476,161,883 - 76,275,082 (+)NCBI
Rnor_6.01477,067,537 - 77,192,702 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1477,067,503 - 77,192,702 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01477,050,030 - 77,174,290 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41477,624,411 - 77,740,695 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1471,300,173 - 71,413,222 (+)NCBICelera
Cytogenetic Map14q21NCBI
SLC2A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2310,023,459 - 10,270,679 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1410,232,093 - 10,479,383 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v044,232,737 - 4,442,387 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.149,606,182 - 9,771,104 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl49,553,491 - 9,746,981 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
SLC2A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1369,394,304 - 69,588,462 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl369,394,152 - 69,595,802 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha371,951,679 - 72,140,512 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0370,150,039 - 70,345,339 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl370,149,887 - 70,345,335 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1369,429,052 - 69,619,481 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0369,593,868 - 69,784,921 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0369,977,002 - 70,166,047 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc2a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap195,907,351 - 6,043,535 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440528562,998,205 - 63,134,783 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647716,717,002 - 16,834,663 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647716,700,915 - 16,836,424 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC2A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl86,210,478 - 6,367,496 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.186,211,143 - 6,367,530 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC2A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12740,815,450 - 40,955,168 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366604786,830,901 - 86,970,736 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.12740,030,051 - 40,224,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Slc2a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475521,165,374 - 21,328,843 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_00462475521,171,274 - 21,322,543 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Slc2a9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11166,733,322 - 66,843,793 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000013515   ⟹   ENSCLAP00000013363
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555145,479,585 - 5,622,960 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000013516   ⟹   ENSCLAP00000013364
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555145,481,073 - 5,625,223 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000013517   ⟹   ENSCLAP00000013365
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555145,481,073 - 5,625,223 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000013518   ⟹   ENSCLAP00000013366
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555145,481,073 - 5,625,223 (-)Ensembl
RefSeq Acc Id: XM_005408843   ⟹   XP_005408900
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555145,479,585 - 5,625,328 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005408900 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013363.1
  ENSCLAP00000013364
  ENSCLAP00000013364.1
  ENSCLAP00000013365.1
  ENSCLAP00000013366.1
RefSeq Acc Id: XP_005408900   ⟸   XM_005408843
- UniProtKB: A0A8C2VEC7 (UniProtKB/TrEMBL),   A0A8C2VHH5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000013366   ⟸   ENSCLAT00000013518
Ensembl Acc Id: ENSCLAP00000013363   ⟸   ENSCLAT00000013515
Ensembl Acc Id: ENSCLAP00000013364   ⟸   ENSCLAT00000013516
Ensembl Acc Id: ENSCLAP00000013365   ⟸   ENSCLAT00000013517

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009235 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013515.1 UniProtKB/TrEMBL
  ENSCLAT00000013516 ENTREZGENE
  ENSCLAT00000013516.1 UniProtKB/TrEMBL
  ENSCLAT00000013517.1 UniProtKB/TrEMBL
  ENSCLAT00000013518.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro GLUT UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Sugar/inositol_transpt UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
NCBI Gene Slc2a9 ENTREZGENE
PANTHER PTHR23503 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER MEMBER 9 UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PRINTS SUGRTRNSPORT UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
  SUGAR_TRANSPORT_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A8C2VC45_CHILA UniProtKB/TrEMBL
  A0A8C2VEC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VHH5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VIL2_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc2a9  solute carrier family 2 member 9    solute carrier family 2 (facilitated glucose transporter), member 9  Symbol and/or name change 5135510 APPROVED