Psma7 (proteasome 20S subunit alpha 7) - Rat Genome Database

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Gene: Psma7 (proteasome 20S subunit alpha 7) Chinchilla lanigera
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Symbol: Psma7
Name: proteasome 20S subunit alpha 7
RGD ID: 9047246
Description: ENCODES a protein that exhibits identical protein binding (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); proteasome complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome (prosome, macropain) subunit, alpha type, 7; proteasome subunit alpha 7; proteasome subunit alpha type-7
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,883,938 - 1,888,882 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,882,397 - 1,887,811 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

  

Molecular Function
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Psma7Chinchillaidentical protein binding enablesISOUniProtKB:O148189068941 PMID:15225636 and PMID:17948026IntActPMID:15225636 and PMID:17948026
Psma7Chinchillaprotein binding enablesISOUniProtKB:Q19T089068941 PMID:19416853IntActPMID:19416853
Psma7Chinchillaprotein binding enablesISOUniProtKB:P25786 more ...9068941 PMID:33961781IntActPMID:33961781
Psma7Chinchillaprotein binding enablesISOUniProtKB:P25788 and UniProtKB:Q925309068941 PMID:21988832IntActPMID:21988832
Psma7Chinchillaprotein binding enablesISOUniProtKB:P25786 more ...9068941 PMID:17948026IntActPMID:17948026
Psma7Chinchillaprotein binding enablesISOUniProtKB:P550369068941 PMID:16990800IntActPMID:16990800
Psma7Chinchillaprotein binding enablesISOUniProtKB:P25786 more ...9068941 PMID:35271311IntActPMID:35271311
Psma7Chinchillaprotein binding enablesISOUniProtKB:P428589068941 PMID:25959826 and PMID:32814053IntActPMID:25959826 and PMID:32814053
Psma7Chinchillaprotein binding enablesISOUniProtKB:P25786 more ...9068941 PMID:15225636IntActPMID:15225636
Psma7Chinchillaprotein binding enablesISOUniProtKB:P25787 and UniProtKB:P257889068941 PMID:21900206IntActPMID:21900206
Psma7Chinchillaprotein binding enablesISOUniProtKB:P497209068941 PMID:28514442IntActPMID:28514442
Psma7Chinchillaprotein binding enablesISOUniProtKB:P25786 more ...9068941 PMID:14733938IntActPMID:14733938
Psma7Chinchillaprotein binding enablesISOUniProtKB:O95456 and UniProtKB:Q969U79068941 PMID:16251969UniProtPMID:16251969
Psma7Chinchillaprotein binding enablesISOUniProtKB:P25789 more ...9068941 PMID:32296183IntActPMID:32296183
Psma7Chinchillaprotein binding enablesISOUniProtKB:P257879068941 PMID:12376572IntActPMID:12376572
Psma7Chinchillaprotein binding enablesISOUniProtKB:P257869068941 PMID:25599644 more ...IntActPMID:25599644 more ...
1 to 16 of 16 rows


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074   PMID:30032202  



Psma7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,883,938 - 1,888,882 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,882,397 - 1,887,811 (+)NCBIChiLan1.0ChiLan1.0
PSMA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,136,733 - 62,143,394 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,136,733 - 62,143,440 (-)EnsemblGRCh38hg38GRCh38
GRCh372060,711,789 - 60,718,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,145,186 - 60,151,869 (-)NCBINCBI36Build 36hg18NCBI36
Build 342060,145,185 - 60,151,869NCBI
Celera2057,446,966 - 57,453,645 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2057,489,262 - 57,493,481 (-)NCBIHuRef
CHM1_12060,612,850 - 60,619,583 (-)NCBICHM1_1
T2T-CHM13v2.02063,927,604 - 63,934,261 (-)NCBIT2T-CHM13v2.0
Psma7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392179,678,160 - 179,684,257 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2179,678,167 - 179,684,226 (-)EnsemblGRCm39 Ensembl
GRCm382180,036,367 - 180,042,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,036,374 - 180,042,433 (-)EnsemblGRCm38mm10GRCm38
MGSCv372179,771,081 - 179,777,107 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362179,965,784 - 179,971,810 (-)NCBIMGSCv36mm8
Celera2184,120,963 - 184,127,008 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2102.55NCBI
Psma7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,514,901 - 187,521,289 (-)NCBIGRCr8
mRatBN7.23167,137,279 - 167,143,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,137,263 - 167,143,672 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3171,514,522 - 171,520,711 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,473,605 - 180,479,794 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,137,114 - 177,143,297 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,420,042 - 175,426,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,420,039 - 175,426,395 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,692,298 - 181,698,641 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,100,807 - 169,107,149 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,006,842 - 169,013,159 (-)NCBI
Celera3165,436,256 - 165,442,444 (+)NCBICelera
Cytogenetic Map3q43NCBI
PSMA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22167,918,126 - 67,924,848 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12067,911,241 - 67,918,017 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02058,502,446 - 58,509,175 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12059,822,545 - 59,826,804 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2059,822,545 - 59,826,802 (-)Ensemblpanpan1.1panPan2
PSMA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,182,344 - 46,186,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,182,420 - 46,186,079 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,419,604 - 45,424,931 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,039,071 - 47,044,386 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,039,078 - 47,044,368 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,140,666 - 46,145,984 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,263,612 - 46,268,935 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,017,870 - 47,023,195 (-)NCBIUU_Cfam_GSD_1.0
Psma7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,355,315 - 194,360,248 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365149,806,624 - 9,813,723 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365149,808,966 - 9,819,548 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,566,373 - 61,572,438 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11761,566,373 - 61,571,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21769,076,205 - 69,079,528 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.122,094,331 - 2,101,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl22,094,455 - 2,100,936 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605050,044,223 - 50,050,960 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psma7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,011,606 - 28,017,130 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,011,606 - 28,017,059 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSCLAT00000004513   ⟹   ENSCLAP00000004429
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555281,883,938 - 1,888,882 (+)Ensembl
RefSeq Acc Id: XM_005410038   ⟹   XP_005410095
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555281,882,397 - 1,887,811 (+)NCBI
Sequence:
Protein RefSeqs XP_005410095 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004429
  ENSCLAP00000004429.1
RefSeq Acc Id: XP_005410095   ⟸   XM_005410038
- UniProtKB: A0A8C2UX38 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000004429   ⟸   ENSCLAT00000004513



1 to 14 of 14 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000003150 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004513 ENTREZGENE
  ENSCLAT00000004513.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Proteasome_alpha UniProtKB/TrEMBL
  Proteasome_alpha-type UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
NCBI Gene Psma7 ENTREZGENE
PANTHER PROTEASOME SUBUNIT ALPHA/BETA UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/TrEMBL
PROSITE PROTEASOME_ALPHA_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt A0A8C2UX38 ENTREZGENE, UniProtKB/TrEMBL
1 to 14 of 14 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Psma7  proteasome 20S subunit alpha 7  Psma7  proteasome subunit alpha 7  Symbol and/or name change 5135510 APPROVED
2015-08-25 Psma7  proteasome subunit alpha 7    proteasome (prosome, macropain) subunit, alpha type, 7  Symbol and/or name change 5135510 APPROVED