Taf5 (TATA-box binding protein associated factor 5) - Rat Genome Database

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Gene: Taf5 (TATA-box binding protein associated factor 5) Chinchilla lanigera
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Symbol: Taf5
Name: TATA-box binding protein associated factor 5
RGD ID: 9030562
Description: ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); promoter-specific chromatin binding (ortholog); INVOLVED IN DNA-templated transcription initiation (ortholog); mRNA transcription by RNA polymerase II (ortholog); positive regulation of transcription initiation by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); FOUND IN actin cytoskeleton (ortholog); chromatin (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa; transcription initiation factor TFIID subunit 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,160,022 - 7,175,608 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,159,199 - 7,176,269 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Taf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,160,022 - 7,175,608 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,159,199 - 7,176,269 (-)NCBIChiLan1.0ChiLan1.0
TAF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810103,367,976 - 103,389,065 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10103,367,966 - 103,389,065 (+)EnsemblGRCh38hg38GRCh38
GRCh3710105,127,733 - 105,148,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610105,117,714 - 105,138,812 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410105,117,713 - 105,138,810NCBI
Celera1098,867,655 - 98,888,755 (+)NCBICelera
Cytogenetic Map10q24.33NCBI
HuRef1098,758,844 - 98,779,615 (+)NCBIHuRef
CHM1_110105,411,841 - 105,432,941 (+)NCBICHM1_1
T2T-CHM13v2.010104,255,272 - 104,276,364 (+)NCBIT2T-CHM13v2.0
Taf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391947,056,187 - 47,071,918 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1947,056,185 - 47,071,918 (+)EnsemblGRCm39 Ensembl
GRCm381947,067,748 - 47,083,479 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1947,067,746 - 47,083,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv371947,142,238 - 47,157,969 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361947,121,059 - 47,136,779 (+)NCBIMGSCv36mm8
Celera1947,836,757 - 47,852,520 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1939.19NCBI
Taf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,899,774 - 255,915,259 (+)NCBIGRCr8
mRatBN7.21245,958,428 - 245,973,914 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,958,428 - 245,973,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1254,084,653 - 254,100,288 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01260,777,997 - 260,793,486 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01253,427,369 - 253,442,983 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,844,480 - 266,859,965 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,844,480 - 266,859,965 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01274,274,891 - 274,290,376 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41252,391,049 - 252,406,534 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11252,655,620 - 252,671,118 (+)NCBI
Celera1241,730,086 - 241,745,569 (+)NCBICelera
Cytogenetic Map1q54NCBI
TAF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28115,251,919 - 115,273,526 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110115,257,250 - 115,278,855 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01099,965,537 - 99,986,955 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110103,426,318 - 103,447,883 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10103,426,334 - 103,447,046 (+)Ensemblpanpan1.1panPan2
TAF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12815,747,102 - 15,761,744 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2815,747,120 - 15,760,901 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,919,071 - 15,935,056 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02816,223,339 - 16,239,322 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2816,223,345 - 16,237,982 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12815,772,401 - 15,788,363 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02815,800,134 - 15,816,104 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,938,791 - 15,954,777 (+)NCBIUU_Cfam_GSD_1.0
Taf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,079,820 - 31,096,636 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366002,679,807 - 2,700,274 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366002,683,045 - 2,700,272 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14114,304,557 - 114,321,626 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114114,304,563 - 114,321,624 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TAF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1996,411,690 - 96,432,668 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604857,528,260 - 57,550,431 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248312,609,819 - 2,625,182 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248312,608,972 - 2,625,036 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001445   ⟹   ENSCLAP00000001403
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554857,160,022 - 7,175,608 (-)Ensembl
RefSeq Acc Id: XM_013504089   ⟹   XP_013359543
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554857,159,199 - 7,176,269 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013359543 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001403
  ENSCLAP00000001403.1
RefSeq Acc Id: XP_013359543   ⟸   XM_013504089
- UniProtKB: A0A8C2UK90 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000001403   ⟸   ENSCLAT00000001445
Protein Domains
TFIID subunit TAF5 NTD2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001063 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001445 ENTREZGENE
  ENSCLAT00000001445.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.500 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  TFIID_NTD2 UniProtKB/TrEMBL
  TFIID_NTD2_sf UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Taf5 ENTREZGENE
PANTHER PTHR19879 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 5 UniProtKB/TrEMBL
Pfam TFIID_NTD2 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF160897 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniProt A0A8C2UK90 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Taf5  TATA-box binding protein associated factor 5    TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa  Symbol and/or name change 5135510 APPROVED