Taf5 (TATA-box binding protein associated factor 5) - Rat Genome Database

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Gene: Taf5 (TATA-box binding protein associated factor 5) Ictidomys tridecemlineatus
Analyze
Symbol: Taf5
Name: TATA-box binding protein associated factor 5
RGD ID: 12613285
Description: ENCODES a protein that exhibits DNA binding (ortholog); promoter-specific chromatin binding (ortholog); RNA polymerase II general transcription initiation factor activity (ortholog); INVOLVED IN DNA-templated transcription initiation (inferred); mRNA transcription by RNA polymerase II (inferred); positive regulation of transcription initiation by RNA polymerase II (inferred); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription initiation factor TFIID subunit 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,079,820 - 31,096,636 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366002,679,807 - 2,700,274 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366002,683,045 - 2,700,272 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Taf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,079,820 - 31,096,636 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366002,679,807 - 2,700,274 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366002,683,045 - 2,700,272 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810103,367,976 - 103,389,065 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10103,367,966 - 103,389,065 (+)EnsemblGRCh38hg38GRCh38
GRCh3710105,127,733 - 105,148,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610105,117,714 - 105,138,812 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410105,117,713 - 105,138,810NCBI
Celera1098,867,655 - 98,888,755 (+)NCBICelera
Cytogenetic Map10q24.33NCBI
HuRef1098,758,844 - 98,779,615 (+)NCBIHuRef
CHM1_110105,411,841 - 105,432,941 (+)NCBICHM1_1
T2T-CHM13v2.010104,255,272 - 104,276,364 (+)NCBIT2T-CHM13v2.0
Taf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391947,056,187 - 47,071,918 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1947,056,185 - 47,071,918 (+)EnsemblGRCm39 Ensembl
GRCm381947,067,748 - 47,083,479 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1947,067,746 - 47,083,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv371947,142,238 - 47,157,969 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361947,121,059 - 47,136,779 (+)NCBIMGSCv36mm8
Celera1947,836,757 - 47,852,520 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1939.19NCBI
Taf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,899,774 - 255,915,259 (+)NCBIGRCr8
mRatBN7.21245,958,428 - 245,973,914 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,958,428 - 245,973,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1254,084,653 - 254,100,288 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01260,777,997 - 260,793,486 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01253,427,369 - 253,442,983 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,844,480 - 266,859,965 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,844,480 - 266,859,965 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01274,274,891 - 274,290,376 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41252,391,049 - 252,406,534 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11252,655,620 - 252,671,118 (+)NCBI
Celera1241,730,086 - 241,745,569 (+)NCBICelera
Cytogenetic Map1q54NCBI
Taf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,160,022 - 7,175,608 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,159,199 - 7,176,269 (-)NCBIChiLan1.0ChiLan1.0
TAF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28115,251,919 - 115,273,526 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110115,257,250 - 115,278,855 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01099,965,537 - 99,986,955 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110103,426,318 - 103,447,883 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10103,426,334 - 103,447,046 (+)Ensemblpanpan1.1panPan2
TAF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12815,747,102 - 15,761,744 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2815,747,120 - 15,760,901 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,919,071 - 15,935,056 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02816,223,339 - 16,239,322 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2816,223,345 - 16,237,982 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12815,772,401 - 15,788,363 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02815,800,134 - 15,816,104 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,938,791 - 15,954,777 (+)NCBIUU_Cfam_GSD_1.0
TAF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14114,304,557 - 114,321,626 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114114,304,563 - 114,321,624 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TAF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1996,411,690 - 96,432,668 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604857,528,260 - 57,550,431 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248312,609,819 - 2,625,182 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248312,608,972 - 2,625,036 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000014541   ⟹   ENSSTOP00000013029
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366002,679,807 - 2,700,274 (-)Ensembl
RefSeq Acc Id: XM_005333605   ⟹   XP_005333662
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721331,079,820 - 31,096,636 (-)NCBI
SpeTri2.0NW_0049366002,683,045 - 2,700,272 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333662 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013029.2
GenBank Protein KAG3264157 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005333662   ⟸   XM_005333605
- UniProtKB: I3MN47 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000013029   ⟸   ENSSTOT00000014541
Protein Domains
TFIID subunit TAF5 NTD2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014536 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014541.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.500 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  TFIID_NTD2 UniProtKB/TrEMBL
  TFIID_NTD2_sf UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Taf5 ENTREZGENE
PANTHER PTHR19879 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 5 UniProtKB/TrEMBL
Pfam TFIID_NTD2 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE LISH UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF160897 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniProt I3MN47 ENTREZGENE, UniProtKB/TrEMBL