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Gene: Sorcs1 (sortilin related VPS10 domain containing receptor 1) Chinchilla lanigera

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Symbol:

Sorcs1

Name:

sortilin related VPS10 domain containing receptor 1

RGD ID:

9027502

Description:

ASSOCIATED WITH Alzheimer's disease 6 (ortholog); prostate cancer (ortholog); proteinuria (ortholog); FOUND IN membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sortilin-related VPS10 domain containing receptor 1; VPS10 domain-containing receptor SorCS1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	3,719,008 - 4,218,699 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955485	3,719,006 - 4,222,143 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease 6 (ISO)

prostate cancer (ISO)

proteinuria (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Sorcs1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	3,719,008 - 4,218,699 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955485	3,719,006 - 4,222,143 (+)	NCBI	ChiLan1.0	ChiLan1.0

SORCS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	106,573,663 - 107,181,138 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	106,573,663 - 107,164,706 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	108,333,421 - 108,924,464 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	108,323,411 - 108,914,282 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	108,323,410 - 108,914,282	NCBI
Celera	10	102,072,553 - 102,663,374 (-)	NCBI		Celera
Cytogenetic Map	10	q25.1	NCBI
HuRef	10	101,965,988 - 102,556,901 (-)	NCBI		HuRef
CHM1_1	10	108,615,122 - 109,206,295 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	107,460,647 - 108,068,078 (-)	NCBI		T2T-CHM13v2.0

Sorcs1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	50,131,733 - 50,668,030 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	50,131,737 - 50,667,084 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	50,143,295 - 50,679,129 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	50,143,299 - 50,678,646 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	50,222,150 - 50,753,102 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	50,204,284 - 50,731,796 (-)	NCBI		MGSCv36	mm8
Celera	19	50,907,555 - 51,438,064 (-)	NCBI		Celera
Cytogenetic Map	19	D1	NCBI
cM Map	19	45.05	NCBI

Sorcs1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	259,022,007 - 259,535,731 (-)	NCBI		GRCr8
mRatBN7.2	1	249,080,662 - 249,594,520 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	249,081,355 - 249,594,507 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	257,225,370 - 257,730,896 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	263,918,158 - 264,423,716 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	256,561,905 - 257,073,670 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	269,965,824 - 270,473,097 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	269,973,351 - 270,472,866 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	277,404,996 - 277,912,261 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	255,767,411 - 256,279,565 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	256,033,640 - 256,545,663 (-)	NCBI
Celera	1	244,828,397 - 245,333,325 (-)	NCBI		Celera
Cytogenetic Map	1	q55	NCBI

SORCS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	118,454,472 - 119,044,048 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	118,459,805 - 119,049,387 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	103,164,581 - 103,753,754 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	106,623,481 - 107,211,230 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

SORCS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	18,619,015 - 18,933,785 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	18,622,234 - 18,797,249 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	18,745,291 - 19,221,898 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	19,098,613 - 19,608,198 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	19,067,554 - 19,609,122 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	18,630,873 - 19,139,229 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	18,678,797 - 19,178,427 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	18,811,161 - 19,310,390 (-)	NCBI		UU_Cfam_GSD_1.0

Sorcs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	27,085,308 - 27,300,512 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936776	28,537 - 241,135 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936776	27,519 - 240,225 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SORCS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	117,479,787 - 118,009,583 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	117,479,817 - 118,009,485 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	127,817,702 - 128,359,641 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SORCS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	99,581,375 - 100,171,637 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	60,747,868 - 61,334,611 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sorcs1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624831	5,435,192 - 5,736,481 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624831	5,433,671 - 5,901,911 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013504127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01058546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01058556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01078182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000004990 ⟹ ENSCLAP00000004898

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955485	3,719,008 - 4,217,094 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000004991 ⟹ ENSCLAP00000004899

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955485	3,900,898 - 4,218,699 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000004992 ⟹ ENSCLAP00000004900

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955485	3,900,898 - 4,217,094 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000004993 ⟹ ENSCLAP00000004901

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955485	3,900,898 - 4,216,853 (+)	Ensembl

RefSeq Acc Id:

XM_013504127 ⟹ XP_013359581

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955485	3,719,006 - 4,222,143 (+)	NCBI

Sequence:

show sequence

CTGCGCCCCCGGCGCCCGCAGCGTCGGCCCCGCCAGCCCCGGGGCGCCGGGGGGTCCGCGGCCG
CGGCCGGACGCCCGGGCCGCCGGAGACGCCGCGGGGCGGACCTGGAGCCGGCGGAGCGCGCAGC
GGGCAGGGGCCCCCGGGCCGCGCCGAAGGACGGAGCGCAGCCCGAGCCCGCGACCCGCGAGCGC
GACCCGGACAGAGCGCCCCGCTTCCGAGCGGAGGAGCTGCGGCTGACCAGCACCACGTTCGCGC
TGACCGGGGACTCCGCGCACAACCAAGCCATGGTCCACTGGTCCGGCCACAACAGCAGCGTGAT
TCTCATCCTGACGAAGCTCTATGACTATAACCTGGGGAGCATCACCGAGAGCTCACTTTGGAGG
TCAACCGATTACGGGACAACTTATGAGAAGCTGAATGACAAAGTGGGTTTGAAGACAATTTTGA
GCTACCTCTATGTGTGTCCTACCAATAAGCGTAAGATTATGCTGCTCACAGACCCAGAGCTTGA
GAGCAGCTTATTGATCAGCTCAGATGAAGGGGCCACGTATCAGAAGTACCGGCTGAGCTTTTAC
ATCCAGAGCTTGCTGTTCCACCCGAAGCAGGAAGACTGGATTCTGGCGTACAGTCAAGACCAAA
AGCTCTACAGCTCTGCTGAATTTGGGAGAAGGTGGCAGCTTATCCAGGAAGGAGTGGTACCAAA
CAGGTTCTACTGGTCTGTGATGGGATCGAACAAGGAGCCAGACCTCGTGCATCTCGAGGCCAGA
ACTGTGGATGGTCATTCACAATATCTCACTTGCAGAATGCAGAACTGCACCGACGCGAACAAGA
ACAAACCTTTCCCAGGCTACATCGACCCAGACTCTCTGATCGTCCAGGATGACTATGTGTTTGT
CCAGCTGACATCAGGAGGAAGACCACATTATTACGTGTCCTACCGAAGGAACGCGTTCGCCCAG
ATGAAGCTTCCGAAGTACGCTTTGCCCAAGGACATGCACGTTATCAGCACAGACGAGAACCAGG
TCTTTGCAGCTGTGCAAGAGTGGAACCAAAACGACACTTACAACCTCTATATCTCGGACACCCG
CGGTGTGTATTTCACCCTGGCCTTGGAGAACGTCCAGAGCAGCAGAGGCCCCGAGGGCAACGTC
ATGATCGACCTCTACGAGGTAGCAGGGATAAAGGGAATGTTCTTGGCGAACAAGAAGATTGACA
ACCAAGTGAAGACTTTCATCACGTACAACAAAGGCCGAGACTGGCGCTTGCTGCAGGCACCAGA
CACGGATTTAAGGGGGGACCCCGTGCACTGTCTGCTGCCTTACTGCTCACTGCACCTTCACCTG
AAAGTCTCTGAGAATCCCTACACGTCAGGGATCATTGCCAGCAGAGACACAGCTCCAAGCATCA
TAGTTGCTTCAGGTAATATAGGTTCTGAATTGTCGGACAATGACATCAGCATGTTTGTCTCTTC
AGATGCAGGGAATACTTGGAGGCAGATCTTTGAGGAAGAGCACAGCATTCTGTATCTTGATCAA
GGTGGAGTCCTGGTTGCTATGAAACACACATCCCTCCCAATACGACATCTTTGGCTGAGTTTTG
ATGAAGGAAGGTCTTGGAGCAAATACAGTTTCACTTCCACTCCCCTGTTTGTGGACGGGGTCCT
GGGCGAGCCCGGAGAAGAGACACTGATCATGACAGTGTTCGGACACTTCAGCCATCGGTCTGAG
TGGCAGCTGGTCAAAGTGGACTACAAGTCCATCTTCGACAGACGGTGCGCCGAGGAGGACTACA
CACCTTGGCACTTGTACAACCAGGGGGAGGCGTGCATCATGGGAGCCAAAAGGAAATACAAGAA
GCGGAAATCAGAGCGGAAGTGTATGCAGGGGAAATACGCGGGCGCCATGGAATCTGAACCCTGT
GTCTGCACAGAGGCTGACTTTGACTGTGACTATGGCTATGAGCGGCACAGCAATGGACAGTGCC
TGCCAGCTTTTTGGTTCAATCCATCCTCTCTGTCAAAGGACTGCAGCGTGGGACAGAGCTACCT
CAACAGCACTGGGTACAGAAAAGTGGTTTCCAACAACTGCACGGACGGAGTGAGAGAGCAGTAC
ACCGCCAAACCGCAGAAGTGTCCGGGCAAGGCCCCTCGCGGGCTGCGGATCGTCACTGCGGACG
GGAAGCTGATGGCGGAGCAAGGCCACAACGTCACCCTGCTCGTGCAGCTGGAAGAGGGTGACGT
TCAGCGGACGCTCATCCAAGTGGACTTTGGGGATGGCATCGCGGTGTCTTACGTCAACCTCAGC
TCCATGGAGGATGGGATCAAGCATGTCTACCAGAACGTGGGCATCTTCCGGGTGACCGTGCAAG
TGGACAACAGTCTGGGGTCTGACAGCGCTGTCCTGTACTTACATGTAACTTGTCCCCTGGAGCA
TGTGCACCTCTCCCTCCCCTTCGTCACCACAAAGAATAAAGAGGTCAACGCGACCGCAGTTCTG
TGGCCCAGCCAAGTGGGCACCCTCACATACGTGTGGTGGTACGGAAACAACACGGAGCCCCTGA
TCACCTTGGAGGGAAGCATATCGTTCAAGTTCACTTCGGAGGGAATGAATACCATCACAGTGCA
GGTCTCTGCAGGGAATGCCATCCTGCAGGACACGAAGACCATTGCAGTGTACGAGGAGTTCCGC
TCTCTCCGCCTGTCCTTCTCGCCCAACCTGGATGACTACAACCCAGACATCCCTGAGTGGAGGA
GGGACATCGGCCGCGTCATCAGGAAGGCCCTGGTACAGGCTACAGGGGTTCCAAGCCAGCACAT
CCTGGTCGCCGTGCTGCCGGGCCTGCCCACTGCTGCGGAGCTCTTCGTTTTGCCCTACCAGGAC
CCAACAGGAGAAAACAGAAGGTCGCCTGAGGATCTGGAGCAGATTTCAGAAGCACTGATCCACA
AGCTCAACCAAAACTCAGTGCACTTTGAGCTGAAGCCTGGGGTCCAAGTCCTTGTCCATGCGGC
ACACCTAACTGCAGCCCCGCTGGTGGATCTCACACCAACCCACAGTGGGTCCGCCATGCTGATG
CTGCTCTCGGTGGTGTTTGTGGGACTGGCTGTGTTCGTCATCTACAAGTTCAAAAGGAAGATCC
CGGGAATTAATGTTTATGCCCAGATGCAGAATGAGAAAGAACAAGAGATGATCAGTCCAGGCAG
TCACACTGAAACCAGGGCCAGTGTCCCTCACACTGAACTAAGGAGGCCTGGCCAGCTTGTAGAT
GAGAAGGTGGAGTCACAGCTCATAGGAAGTATTTCCATAGTTGCTGAGAATCAAAGCACAAAAG
AAATCCCTACCTATGTAAATGTTTGAATGGAGGACGCCAGTAAAACAAACAAAACAAACAAACA
ATAAAAAAAAAAAAAAAAAACCAAAATCCAAACAAACAAACACTCACTGCATCGGGACGTTTTA
ATTCTTCCGACACAGACAACAAGGGTTTTTAGCTTTAAGCCTGTGCATGTGGACACTAACTTAA
GAACATGTTCAGAGGGGTAGTGTACAGGTGCTCTATTTTAATGGAAAACACTCCCCTCTCCTTC
TCTTCTCTTTTTTCTGATCGGTCGTGTTTGTAGAAAATTCATAACATATATAGGCCAAGGAAAT
CTGCATGCATTTTTGGAAATATTCTTGGCTCTAGATTTAACAGCTCTTTCAGCACTGCAGGCTG
ATGGGTGGACTAGCCATCTCAGGCCTTTTCATAAGACATGCACAGGAGTTTGAAACCCTGAGCT
GTTTCTCTGTCCCGCCCTCCTCAGTGTCAGTTTCCCTTCTCAGTTAGCGTCGGCAGCCCTGTTG
GTCAGCAGTGGCCGCGGGCTGCCCTCTCTCTCCATTCTCTCTGGCCACAGGGACAAAGATGCAA
GTTGAAGATCCATGCATGCAGGTGCAGCAGGGAGGGAAGGGAAGCAGGGAAACAGCATGCCGGA
AACGGACCGCTGTTTCCTGTTCAGCTTTTCTCCTCGCAGCTTTCTTTATTTTCATCCCAAATGA
TGTAGAAAATGGCATTTTCCTGGTAGGTCACGGTTGCTTTGCTTTCCCATTGGTTTGCCTCTCG
CGAGTGGCCGGGGTGCTTGCTGCAGCAGCACGTCTGCTAAAATTGGAACCATGTTGATGTCTTT
GAATCTTTTCCCTCCCACCCCCAAGTTATCCTTCAGGTGTTCCCACTTTTTCTTCCCAGACACG
TTGCTAGATTTTGAACATTAATGCTCACATTTCCTAAGTACTGGCCTAGCTTCTGCCGACCCTG
ATCCCACAAGTCTTCACCTCTGTCAGTTCTGTACACGGCCAAGCATGCCAGACTCCCTGCACAC
CGACCAAACTGCACCCTGCCCTGCAGGGACCATTCCATGTACCCTTCTTCTCCTCCTCCAGAGC
CGCCTTTGCCAAATATCCCTGCCTTTCCCCACCTGGAAACATGCAATGTGCGTGAAAGAGTTGA
TACATGCAAAGCAACCCAAACTGGGCTCTGTACTTTGGAAAAGAAAGCATACGGATACTGGCAG
TGTTGTCACACATTAACAGAAACTTTGCGCGGTCAGGCCATGGGAGACTTGTGAGATGTGTTTT
GAATGTATAACAATATGCAGGAGGGTTTCTTCTGTGATAGTTGCTGTTGGCCAATATTCCTCTC
TTATAGTAGAATAAAAATATTTGTGAAATAAAACTGATTTTAACAGGAGAAGCAGGTGAACAGA
GTTAATGTTGGAGTGTCCAAAAATCTGAGAAAATAGGTCTTATCGTACATTAGGATGAGATTTT
GATTATTTAGAGTGATCCCAGTGATTTCACTTGTGCTCTCTGATCTCCGAGTGCCGTGGTGTCA
GTAAAGGGAAAGAAAGTCAGTGTGAATTGGAGGAATTAGCTGACTACAGTAAAGTGAAAGAAAT
GCTCACAATCCTCAAAGTATGAAGCAGCCCCAGTTTTCCAAGGACAATCATGAAAAAGGCCCAG
AGAAAGAAGGAAATAAAAACCTGTCTGCTACTGAAGCCCCTTCAGCGCCATGCCTAGACAAAGC
CCACTCTAAGGGCAGAAGAGAGTAGATCTATTATACCAGTTAGAAAAACCTGCCTTCTTGGCTG
TGTTTCCAAGGACACAACAGGGTGGAAAAGAGGCGCTAGTGATGATGAGGACTTCCAAATGATC
CCGATGATCCAGACCTTTGTGTAGCTCAGGCAGGAGAAGTGTAGAAAAGCTACTGTCAGGAGTT
AGTCAAGCAGAGTGTTTTATGGTGGAGGATGTCCCACCTCCGTCAGGGCAGTGGACTCTGCTTG
GTGCGACGACCTCTTTGTAGAACATCATTGATCCCCAGCCTGCCAGGCTTCCTATCTTGTAGAG
AACATCCTCACCGATGCTCTTTAATCGGAGCCTCCCGAATTTAATCTGGAAGACAACATGTTTA
GAAATCAAAACAGATTTACAAAAGAGCACAGGGAGTCCTCTGAGTTGCAGTTCAATTCATTTTA
ATTGGAAAATTATGAAAAGGGGAATAACATTCTGAATCTAGCACAGTGCCTTGCCTGGACTAGT
ATTATGAAAATAGCTTATTAATGACCTAAATGATTGAAAAGATGTAAGGAAGAAGGGCTGTATG
TCCTAATGTAAAGTAGAGGCAGACATGAGATGCCTGGTGTTTTGGAAAGCGACCAAAGGTGACC
AGATATAGATTCGGCATCTCCAGTGTCCTCATGTGCCTGTCCTCAAAGTTCCCTCGCATTGTAG
GTGACAGGTGAGGCAAGGTACTTACTGTGGAGAAGGAACCCCATAGTTCCTGTACCCTTAACGA
GGTTCTCAGAGTGTGGTACCAGGCCAGCAGTATCAGCATCACCTGCAAATACTGGGTCTGTATC
CAGACCTACTAAGTCACTATTGCTAGGTAACACTGGACCCAGTAATCTACTTCAACAAATCCTC
CAGGTGATTGGTGTGTGCTGAAGGTGAGAACCACCACGCTATGCCATTCCAACTCACTCCCAAA
GAGAAAGAAATGAGCACCTACAAACGGGAGGGACCCAAGTGCCTACCTACTCACTAACAGCAGG
TGCAAACCCAACGAAGAGCTTGGTGGGCTTAGGGCCAGAGGAAGATGCTGAGGGACGGATGTAG
AAGGTATATTCAGGGCAGGCTAAAAATCTGATACTGCAACATTTTCTAAAGCGCCGGAAGGCAA
ACTGTGCATGCTGTACCTGAACTACCCAACCAACGTTTCCTCCTTTGCCTTACTCCTAATTGGA
TTCCCTGTCCAAAATGCAGAGGTTTGCTTTGCTTTTTTTTTTCAGAAGTTCCAAACAGCAACTT
TGAGAGCAGTGGGGTGCTTGGCATCCGTTCTGTGTTTTCCAGGATTCCAACTGAGCATTGAAAT
CCTCATTTGCCAACTTATTTTTATAGGAAGCCAATTTAAAAACAATGAAAGTTTTCTTATAGTA
TTGGAACTAATTCTAATTTTAAAATGACTTTTTTGATGTATTTTTTGTTAAATACTATGTAGTG
TAATGTATAATTGCTCTTGTTTATTGCTTTTACAATCATATTTATTAAACAGATAATGTCTCTA
AA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013359581	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004898
	ENSCLAP00000004898.1
	ENSCLAP00000004899.1
	ENSCLAP00000004900.1
	ENSCLAP00000004901.1

RefSeq Acc Id:

XP_013359581 ⟸ XM_013504127

- UniProtKB:

A0A8C2USI2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

LRPRRPQRRPRQPRGAGGSAAAAGRPGRRRRRGADLEPAERAAGRGPRAAPKDGAQPEPATRER
DPDRAPRFRAEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLYDYNLGSITESSLWR
STDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDPELESSLLISSDEGATYQKYRLSFY
IQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEAR
TVDGHSQYLTCRMQNCTDANKNKPFPGYIDPDSLIVQDDYVFVQLTSGGRPHYYVSYRRNAFAQ
MKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNV
MIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHL
KVSENPYTSGIIASRDTAPSIIVASGNIGSELSDNDISMFVSSDAGNTWRQIFEEEHSILYLDQ
GGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSTPLFVDGVLGEPGEETLIMTVFGHFSHRSE
WQLVKVDYKSIFDRRCAEEDYTPWHLYNQGEACIMGAKRKYKKRKSERKCMQGKYAGAMESEPC
VCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSVGQSYLNSTGYRKVVSNNCTDGVREQY
TAKPQKCPGKAPRGLRIVTADGKLMAEQGHNVTLLVQLEEGDVQRTLIQVDFGDGIAVSYVNLS
SMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVL
WPSQVGTLTYVWWYGNNTEPLITLEGSISFKFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFR
SLRLSFSPNLDDYNPDIPEWRRDIGRVIRKALVQATGVPSQHILVAVLPGLPTAAELFVLPYQD
PTGENRRSPEDLEQISEALIHKLNQNSVHFELKPGVQVLVHAAHLTAAPLVDLTPTHSGSAMLM
LLSVVFVGLAVFVIYKFKRKIPGINVYAQMQNEKEQEMISPGSHTETRASVPHTELRRPGQLVD
EKVESQLIGSISIVAENQSTKEIPTYVNV

hide sequence

Ensembl Acc Id:

ENSCLAP00000004898 ⟸ ENSCLAT00000004990

Ensembl Acc Id:

ENSCLAP00000004899 ⟸ ENSCLAT00000004991

Ensembl Acc Id:

ENSCLAP00000004900 ⟸ ENSCLAT00000004992

Ensembl Acc Id:

ENSCLAP00000004901 ⟸ ENSCLAT00000004993

Protein Domains

PKD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003479	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004990	ENTREZGENE
	ENSCLAT00000004990.1	UniProtKB/TrEMBL
	ENSCLAT00000004991.1	UniProtKB/TrEMBL
	ENSCLAT00000004992.1	UniProtKB/TrEMBL
	ENSCLAT00000004993.1	UniProtKB/TrEMBL
Gene3D-CATH	2.10.70.80	UniProtKB/TrEMBL
	2.120.10.10	UniProtKB/TrEMBL
	2.130.10.10	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	3.30.60.270	UniProtKB/TrEMBL
InterPro	Ig-like_fold	UniProtKB/TrEMBL
	PKD_dom	UniProtKB/TrEMBL
	PKD_dom_sf	UniProtKB/TrEMBL
	Sortilin_C	UniProtKB/TrEMBL
	Sortilin_N	UniProtKB/TrEMBL
	VPS10	UniProtKB/TrEMBL
	VPS10-sortilin	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Sorcs1	ENTREZGENE
PANTHER	SORTILIN RELATED	UniProtKB/TrEMBL
	VPS10 DOMAIN-CONTAINING RECEPTOR SORCS1	UniProtKB/TrEMBL
Pfam	PKD	UniProtKB/TrEMBL
	Sortilin-Vps10	UniProtKB/TrEMBL
	Sortilin_C	UniProtKB/TrEMBL
PROSITE	PKD	UniProtKB/TrEMBL
SMART	VPS10	UniProtKB/TrEMBL
Superfamily-SCOP	Oligoxyloglucan reducing end-specific cellobiohydrolase	UniProtKB/TrEMBL
	SSF49299	UniProtKB/TrEMBL
UniProt	A0A8C2USI2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2UUC0_CHILA	UniProtKB/TrEMBL
	A0A8C2UVJ4_CHILA	UniProtKB/TrEMBL
	A0A8C2UXX4_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Sorcs1	sortilin related VPS10 domain containing receptor 1		sortilin-related VPS10 domain containing receptor 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar