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Gene: Rhof (ras homolog family member F, filopodia associated) Chinchilla lanigera

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Symbol:

Rhof

Name:

ras homolog family member F, filopodia associated

RGD ID:

9021138

Description:

INVOLVED IN actin filament organization (ortholog); ASSOCIATED WITH immunodeficiency 9 (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ras homolog family member F (in filopodia); rho-related GTP-binding protein RhoF

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	6,631,666 - 6,643,634 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	6,631,327 - 6,643,634 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

immunodeficiency 9 (ISO)

short chain acyl-CoA dehydrogenase deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Rhof
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	6,631,666 - 6,643,634 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	6,631,327 - 6,643,634 (+)	NCBI	ChiLan1.0	ChiLan1.0

RHOF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	121,777,754 - 121,793,688 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	121,777,754 - 121,803,403 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	122,215,660 - 122,231,594 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	120,700,043 - 120,715,977 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	120,678,379 - 120,694,314	NCBI
Celera	12	121,851,908 - 121,867,844 (-)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	119,227,850 - 119,243,788 (-)	NCBI		HuRef
CHM1_1	12	122,183,408 - 122,199,363 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	121,774,422 - 121,790,359 (-)	NCBI		T2T-CHM13v2.0

Rhof
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	123,256,243 - 123,270,692 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	123,241,107 - 123,270,755 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	123,118,180 - 123,141,808 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	123,103,044 - 123,132,692 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	123,568,189 - 123,582,638 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	123,363,661 - 123,393,013 (-)	NCBI		MGSCv36	mm8
Celera	5	120,213,155 - 120,227,597 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	62.77	NCBI

Rhof
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	39,082,413 - 39,107,528 (+)	NCBI		GRCr8
mRatBN7.2	12	33,422,375 - 33,446,689 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	33,431,280 - 33,446,703 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	34,609,866 - 34,624,919 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	35,221,237 - 35,236,290 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	34,273,106 - 34,288,162 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	38,879,763 - 38,894,095 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	38,880,377 - 38,894,582 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	40,778,266 - 40,792,798 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	34,598,537 - 34,599,106 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	35,111,762 - 35,127,795 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

RHOF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	129,867,497 - 129,884,039 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	129,863,257 - 129,880,286 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	119,381,412 - 119,397,229 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	122,751,751 - 122,766,800 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	122,751,751 - 122,766,800 (-)	Ensembl	panpan1.1		panPan2

RHOF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	7,476,753 - 7,489,427 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	7,477,766 - 7,491,160 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	7,637,156 - 7,649,745 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	7,729,301 - 7,741,890 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	7,729,300 - 7,746,231 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	7,661,165 - 7,673,754 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	7,751,513 - 7,764,100 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	7,707,438 - 7,720,028 (+)	NCBI		UU_Cfam_GSD_1.0

Rhof
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	156,845,544 - 156,867,546 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	2,621,689 - 2,633,853 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	2,611,847 - 2,633,878 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RHOF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	30,896,114 - 30,908,419 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	30,886,053 - 30,908,048 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	32,691,259 - 32,713,248 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RHOF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	117,147,282 - 117,163,358 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	117,148,143 - 117,163,604 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	127,802,931 - 127,822,518 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rhof
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	22,162,985 - 22,174,066 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	22,163,533 - 22,174,080 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005403257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01057408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01057409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01188779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01044096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000018127 ⟹ ENSCLAP00000017949

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955482	6,631,666 - 6,643,634 (+)	Ensembl

RefSeq Acc Id:

XM_005403257 ⟹ XP_005403314

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955482	6,631,327 - 6,643,634 (+)	NCBI

Sequence:

show sequence

GTCTGGCGTTACCGGCGGGCGCGGCGCGATGCCCGCGGCGGGCTGGGCGTGGGAGCTCCGCTTG
CGGCCGAGCACCCGCATCCCCGGCCGCCTCGGCTGCTCCAGCGCGGAGAGCTGAACGCCCGGGG
CGCGGCCCCCCAGCGCCAGCGAGCAGGAGCGGGCCGGGGGGCTGCCCGGCGGAGGCGGCCCGGG
GGCGTGGCCTGCGTGGCTCCGCCCGCGGCTCCCAGGCTCGGCGCGGCGCGGCGCGGCCCGCAGT
GCTGCCGGCTCCGGGCGATGGACGCCCCCGCCGCCCCGGGCCCGGGCAGGAAGGAGCTGAAGAT
CGTGATCGTGGGGGACGGCGGCTGCGGCAAGACGTCGCTGCTCATGGTGTTCAGCCAGGGCGCC
TTTCCCGAGCACTACGCCCCCTCGGTGTTTGAGAAGTACTCGGCCAGCGTGACGGTGGGCAGCA
AGGAGGTGACCCTGAACCTGTACGACACGGCCGGACAGGAGGACTACGACCGGCTTCGACCCCT
GTCCTACCAGAACACCCACCTTGTGCTCATATGCTATGACGTCATGAACCCCACCAGCTACGAG
AACGTCCTCATCAAGTGGTTCCCGGAGGTCACACATTTCTGCCGGGGGACCCCCATGGTGCTCA
TTGGCTGCAAGACGGACCTGCGCAAGGACAAGGAGCAGCTGCGGAAGCTGCGGGCAGCCCAGCT
GGAGCCCATCACCTACAATCAGGGCCTGAGCGCCTGCCAGCAGATCCGCGCTGCGCTCTACCTC
GAGTGCTCGGCCAAGTTCCGGGAGAACGTGGAGGACGTGTTCCGGGAGGCCGCCAAGGTGGCGC
TCAGTGCACTGAAGAAAGCGCAGCGGAAGAAACACCGCCGGCTTTGCGTGCTGCTGTGAGCCGG
CCACCAAGGTCCTGGGCGGGGCTCACTGCGAGAGGACGCCAGGGCCTCGCCTGAGGGCCCACGC
TGGTGGCCAGTGAGGTCCCTGTATGGAGCCAGCCCTTGTTCCCGAGCGCCCCCCTCCCAGGGTC
CCCTGTGCACACCCAGCTCGTGGGTACAACTTGGAATACGCCAGGGACCTGGGCAGTCGTGACT
TGGCGCCACCCTGCACAAGCGCCCAGCCCTGCTGCCCGAGCCGCCGCCCTGGGCTCCCGAGATA
GGCAGGCTGCATCCTCCTGCCTCTTCCTCCCCCCGCCCCCCGGGAACTCGGGCCACCATGGGGC
CAGAGCCTATCGGGACGCAACAGGCGGCAGCCCCGGATGTGGGGCGGGCACCAGCCGCCCTCTT
CCTCTCCATTCCGCGTAGAGGACCTGGGCCTCGGCAGGGCCACCGTCTGTTCAGAGCTGGGCAC
AAGTACCCAGGGGGAGAAGGACAATCTCGAAATGCCGAGTGCCTGCCCTGGGCCGCCCCTCTGA
CCCTGCTCCAGGTCTCCCTGCCCCGGGGACAGGGTGGAAAGTCTGCTCTCTGCATAGAGCGCAT
CCCATCCAAGCCAGGAGCGGGCCGTCTAGCAGGTCTGAGCACAGAACCACAGCACCGCCTGGCA
CACACGGACAGCGTCTCTGGACAAGACCCCCGACGTCCTGAGAGCCACATCCCTGAGCCCCACA
GTTCTAGGGTTGGGGCCTGGGCTGCTCTGATGCCCTCAGCTGAGAGCTGCTTGTTCTGGAGCAA
GTAGGACCTGGTGCTGCTGCAGGAGCCATGGCCTTGGCCAGCGACCTCCTGCCTCAGCCTCCCT
CTGCTGGCTAGATCAAGTCAGGCTGCTAGGAAGGGGACTGTGGAAGCCCCACCCCCGGGGGAGG
GAGCCAGACGTCCTGTTTCATAGAACCCAAGGCCTGGGGCAGAGGCCAGCATACTACGTACAGC
CCGTGGGCCGCACCTGGCCACTACCTAGTTTTGTAAATAAAGTTTTATTGGCACATGGCCACAC
CTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005403314	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000017949
	ENSCLAP00000017949.1

RefSeq Acc Id:

XP_005403314 ⟸ XM_005403257

- UniProtKB:

A0A8C2VRV7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDAPAAPGPGRKELKIVIVGDGGCGKTSLLMVFSQGAFPEHYAPSVFEKYSASVTVGSKEVTLN
LYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYENVLIKWFPEVTHFCRGTPMVLIGCKTD
LRKDKEQLRKLRAAQLEPITYNQGLSACQQIRAALYLECSAKFRENVEDVFREAAKVALSALKK
AQRKKHRRLCVLL

hide sequence

Ensembl Acc Id:

ENSCLAP00000017949 ⟸ ENSCLAT00000018127

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012313	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018127	ENTREZGENE
	ENSCLAT00000018127.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/TrEMBL
	Small_GTPase_Rho	UniProtKB/TrEMBL
NCBI Gene	Rhof	ENTREZGENE
PANTHER	PTHR24072	UniProtKB/TrEMBL
	RHO-RELATED GTP-BINDING PROTEIN RHOF	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
SMART	RAB	UniProtKB/TrEMBL
	RAN	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8C2VRV7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-26	Rhof	ras homolog family member F, filopodia associated		ras homolog family member F (in filopodia)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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