Sec31b (SEC31 homolog B, COPII coat complex component) - Rat Genome Database

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Gene: Sec31b (SEC31 homolog B, COPII coat complex component) Chinchilla lanigera
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Symbol: Sec31b
Name: SEC31 homolog B, COPII coat complex component
RGD ID: 9009521
Description: FOUND IN vesicle coat (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SEC31 homolog B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554859,615,879 - 9,655,826 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
vesicle coat  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sec31b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554859,615,879 - 9,655,826 (+)NCBIChiLan1.0ChiLan1.0
SEC31B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810100,486,647 - 100,519,861 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10100,486,646 - 100,519,864 (-)EnsemblGRCh38hg38GRCh38
GRCh3710102,246,404 - 102,279,618 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610102,236,393 - 102,269,585 (-)NCBINCBI36Build 36hg18NCBI36
Celera1095,984,251 - 96,017,442 (-)NCBICelera
Cytogenetic Map10q24.31NCBI
HuRef1095,875,263 - 95,908,412 (-)NCBIHuRef
CHM1_110102,531,040 - 102,564,247 (-)NCBICHM1_1
T2T-CHM13v2.010101,369,754 - 101,402,965 (-)NCBIT2T-CHM13v2.0
Sec31b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391944,505,396 - 44,534,287 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1944,505,396 - 44,534,303 (-)EnsemblGRCm39 Ensembl
GRCm381944,516,957 - 44,545,848 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1944,516,957 - 44,545,864 (-)EnsemblGRCm38mm10GRCm38
MGSCv371944,591,447 - 44,620,338 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361944,570,268 - 44,599,159 (-)NCBIMGSCv36mm8
Celera1945,284,673 - 45,313,471 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1937.98NCBI
Sec31b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81253,324,081 - 253,353,779 (-)NCBIGRCr8
mRatBN7.21243,376,283 - 243,404,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,378,456 - 243,404,557 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1251,524,347 - 251,549,778 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01258,225,458 - 258,250,968 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01250,874,538 - 250,899,977 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01264,266,279 - 264,294,687 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1264,268,338 - 264,294,630 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01271,709,442 - 271,737,734 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41249,567,756 - 249,593,300 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1239,193,219 - 239,218,674 (-)NCBICelera
Cytogenetic Map1q54NCBI
SEC31B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,370,529 - 112,406,135 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,375,843 - 112,408,915 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01097,086,792 - 97,120,604 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110100,567,924 - 100,600,952 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10100,568,891 - 100,598,141 (-)Ensemblpanpan1.1panPan2
SEC31B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12813,210,213 - 13,246,170 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2813,200,000 - 13,243,682 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2813,357,182 - 13,417,188 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02813,655,397 - 13,715,439 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2813,658,388 - 13,717,164 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12813,201,826 - 13,261,919 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02813,240,326 - 13,303,536 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02813,402,557 - 13,434,535 (-)NCBIUU_Cfam_GSD_1.0
Sec31b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721333,525,170 - 33,559,191 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366005,129,947 - 5,162,427 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366005,129,047 - 5,162,416 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC31B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14111,588,091 - 111,624,073 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114111,585,917 - 111,626,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2463,919,155 - 63,955,465 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEC31B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1993,505,655 - 93,537,525 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl993,506,626 - 93,537,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604854,546,134 - 54,589,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005403906   ⟹   XP_005403963
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554859,615,879 - 9,655,826 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403908   ⟹   XP_005403965
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554859,615,980 - 9,655,826 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403909   ⟹   XP_005403966
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554859,615,980 - 9,655,826 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403910   ⟹   XP_005403967
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554859,615,980 - 9,655,826 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403911   ⟹   XP_005403968
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554859,615,980 - 9,654,874 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504055   ⟹   XP_013359509
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554859,616,638 - 9,655,826 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504057   ⟹   XP_013359511
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554859,615,980 - 9,655,826 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504058   ⟹   XP_013359512
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554859,615,980 - 9,655,826 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504059   ⟹   XP_013359513
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554859,615,980 - 9,655,826 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504060   ⟹   XP_013359514
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554859,617,991 - 9,655,826 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005403963   ⟸   XM_005403906
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005403965   ⟸   XM_005403908
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005403967   ⟸   XM_005403910
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005403966   ⟸   XM_005403909
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005403968   ⟸   XM_005403911
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013359511   ⟸   XM_013504057
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013359513   ⟸   XM_013504059
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_013359512   ⟸   XM_013504058
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013359509   ⟸   XM_013504055
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013359514   ⟸   XM_013504060
- Peptide Label: isoform X9
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Sec31b ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Sec31b  SEC31 homolog B, COPII coat complex component    SEC31 homolog B (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED