Retsat (retinol saturase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Retsat (retinol saturase) Chinchilla lanigera
Analyze
Symbol: Retsat
Name: retinol saturase
RGD ID: 8998604
Description: ENCODES a protein that exhibits all-trans-retinol 13,14-reductase activity (ortholog); INVOLVED IN retinoid metabolic process (ortholog); retinol metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH Simpson-Golabi-Behmel syndrome type 1 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nuclear membrane (ortholog); nuclear outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: all-trans-retinol 13,14-reductase; retinol saturase (all-trans-retinol 13,14-reductase)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554242,107,602 - 2,122,029 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554242,107,602 - 2,122,029 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Retsat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554242,107,602 - 2,122,029 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554242,107,602 - 2,122,029 (+)NCBIChiLan1.0ChiLan1.0
RETSAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,341,955 - 85,354,528 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl285,341,955 - 85,354,531 (-)EnsemblGRCh38hg38GRCh38
GRCh37285,569,078 - 85,581,651 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,422,733 - 85,435,166 (-)NCBINCBI36Build 36hg18NCBI36
Celera285,397,081 - 85,409,824 (-)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,466,036 - 85,478,645 (-)NCBIHuRef
CHM1_1285,498,789 - 85,511,532 (-)NCBICHM1_1
T2T-CHM13v2.0285,343,946 - 85,356,519 (-)NCBIT2T-CHM13v2.0
Retsat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,575,585 - 72,584,471 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,575,458 - 72,585,408 (+)EnsemblGRCm39 Ensembl
GRCm38672,598,602 - 72,607,488 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,598,475 - 72,608,425 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,548,622 - 72,557,482 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,528,137 - 72,536,997 (+)NCBIMGSCv36mm8
Celera674,696,892 - 74,705,756 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
Retsat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84106,211,459 - 106,220,222 (+)NCBIGRCr8
mRatBN7.24104,653,306 - 104,662,069 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,653,155 - 104,668,310 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4110,032,371 - 110,040,986 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04105,807,493 - 105,816,108 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04104,421,060 - 104,429,824 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04100,465,365 - 100,474,128 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,465,170 - 100,474,301 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04165,235,748 - 165,244,511 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44106,100,103 - 106,108,866 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14106,344,583 - 106,353,347 (+)NCBI
Celera493,806,216 - 93,814,979 (+)NCBICelera
Cytogenetic Map4q32NCBI
RETSAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21241,028,676 - 41,041,265 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A41,031,614 - 41,044,027 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A85,394,700 - 85,407,252 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A86,946,460 - 86,958,962 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A86,946,460 - 86,958,962 (-)Ensemblpanpan1.1panPan2
RETSAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,668,185 - 39,682,166 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,668,256 - 39,680,560 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,339,737 - 39,353,717 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01740,477,665 - 40,491,702 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1740,477,648 - 40,490,909 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11739,545,075 - 39,559,052 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,616,706 - 39,630,684 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01740,016,620 - 40,030,598 (+)NCBIUU_Cfam_GSD_1.0
Retsat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,021,399 - 79,031,559 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,826,923 - 1,841,141 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,826,813 - 1,837,048 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RETSAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,399,688 - 59,416,685 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,401,161 - 59,416,829 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,307,573 - 62,335,560 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RETSAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,803,919 - 21,816,637 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1421,803,417 - 21,815,473 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604590,648,549 - 90,660,638 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Retsat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474917,775,002 - 17,786,873 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474917,775,009 - 17,787,173 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000013101   ⟹   ENSCLAP00000012951
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554242,107,602 - 2,122,029 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000013102   ⟹   ENSCLAP00000012952
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554242,107,699 - 2,121,070 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000013103   ⟹   ENSCLAP00000012953
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554242,107,699 - 2,121,070 (+)Ensembl
RefSeq Acc Id: XM_005385436   ⟹   XP_005385493
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554242,107,602 - 2,122,029 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385493 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012951
  ENSCLAP00000012951.1
  ENSCLAP00000012952.1
  ENSCLAP00000012953.1
RefSeq Acc Id: XP_005385493   ⟸   XM_005385436
- UniProtKB: A0A8C2VBL4 (UniProtKB/TrEMBL),   A0A8C2VHX8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000012953   ⟸   ENSCLAT00000013103
Ensembl Acc Id: ENSCLAP00000012951   ⟸   ENSCLAT00000013101
Ensembl Acc Id: ENSCLAP00000012952   ⟸   ENSCLAT00000013102


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008939 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013101 ENTREZGENE
  ENSCLAT00000013101.1 UniProtKB/TrEMBL
  ENSCLAT00000013102.1 UniProtKB/TrEMBL
  ENSCLAT00000013103.1 UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/TrEMBL
InterPro FAD/NAD-bd_sf UniProtKB/TrEMBL
  Retinol_saturase UniProtKB/TrEMBL
NCBI Gene Retsat ENTREZGENE
PANTHER ALL-TRANS-RETINOL 13,14-REDUCTASE UniProtKB/TrEMBL
  BLR7054 PROTEIN UniProtKB/TrEMBL
Pfam NAD_binding_8 UniProtKB/TrEMBL
Superfamily-SCOP SSF51905 UniProtKB/TrEMBL
UniProt A0A8C2VBL4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VCQ0_CHILA UniProtKB/TrEMBL
  A0A8C2VHX8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Retsat  retinol saturase    retinol saturase (all-trans-retinol 13,14-reductase)  Symbol and/or name change 5135510 APPROVED