Retsat (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955424 | 2,107,602 - 2,122,029 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955424 | 2,107,602 - 2,122,029 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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RETSAT (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 2 | 85,341,955 - 85,354,528 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 2 | 85,341,955 - 85,354,531 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 2 | 85,569,078 - 85,581,651 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 2 | 85,422,733 - 85,435,166 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 2 | 85,397,081 - 85,409,824 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | p11.2 | NCBI | | | | | HuRef | 2 | 85,466,036 - 85,478,645 (-) | NCBI | | HuRef | | | CHM1_1 | 2 | 85,498,789 - 85,511,532 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 2 | 85,343,946 - 85,356,519 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Retsat (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 6 | 72,575,585 - 72,584,471 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 6 | 72,575,458 - 72,585,408 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 6 | 72,598,602 - 72,607,488 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 6 | 72,598,475 - 72,608,425 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 6 | 72,548,622 - 72,557,482 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 6 | 72,528,137 - 72,536,997 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 6 | 74,696,892 - 74,705,756 (+) | NCBI | | Celera | | | Cytogenetic Map | 6 | C1 | NCBI | | | | | cM Map | 6 | 32.27 | NCBI | | | | |
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Retsat (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 4 | 106,211,459 - 106,220,222 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 4 | 104,653,306 - 104,662,069 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 4 | 104,653,155 - 104,668,310 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 4 | 110,032,371 - 110,040,986 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 4 | 105,807,493 - 105,816,108 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 4 | 104,421,060 - 104,429,824 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 4 | 100,465,365 - 100,474,128 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 4 | 100,465,170 - 100,474,301 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 4 | 165,235,748 - 165,244,511 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 4 | 106,100,103 - 106,108,866 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 4 | 106,344,583 - 106,353,347 (+) | NCBI | | | | | Celera | 4 | 93,806,216 - 93,814,979 (+) | NCBI | | Celera | | | Cytogenetic Map | 4 | q32 | NCBI | | | | |
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RETSAT (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 12 | 41,028,676 - 41,041,265 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 2A | 41,031,614 - 41,044,027 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 2A | 85,394,700 - 85,407,252 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 2A | 86,946,460 - 86,958,962 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 2A | 86,946,460 - 86,958,962 (-) | Ensembl | panpan1.1 | | panPan2 | |
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RETSAT (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 17 | 39,668,185 - 39,682,166 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 17 | 39,668,256 - 39,680,560 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 17 | 39,339,737 - 39,353,717 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 17 | 40,477,665 - 40,491,702 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 17 | 40,477,648 - 40,490,909 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 17 | 39,545,075 - 39,559,052 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 17 | 39,616,706 - 39,630,684 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 17 | 40,016,620 - 40,030,598 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Retsat (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024406292 | 79,021,399 - 79,031,559 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936712 | 1,826,923 - 1,841,141 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936712 | 1,826,813 - 1,837,048 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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RETSAT (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 3 | 59,399,688 - 59,416,685 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 3 | 59,401,161 - 59,416,829 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 3 | 62,307,573 - 62,335,560 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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RETSAT (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 14 | 21,803,919 - 21,816,637 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 14 | 21,803,417 - 21,815,473 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666045 | 90,648,549 - 90,660,638 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Retsat (Heterocephalus glaber - naked mole-rat) |
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