C5ar2 (complement C5a receptor 2) - Rat Genome Database

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Gene: C5ar2 (complement C5a receptor 2) Chinchilla lanigera
Analyze
Symbol: C5ar2
Name: complement C5a receptor 2
RGD ID: 8990774
Description: INVOLVED IN negative regulation of interleukin-6 production (ortholog); negative regulation of neutrophil chemotaxis (ortholog); negative regulation of tumor necrosis factor production (ortholog); FOUND IN apical part of cell (ortholog); basal plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C5a anaphylatoxin chemotactic receptor 2; complement component 5a receptor 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555741,221,950 - 1,242,547 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
C5ar2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555741,221,950 - 1,242,547 (+)NCBIChiLan1.0ChiLan1.0
C5AR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,332,175 - 47,347,329 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,332,175 - 47,347,329 (+)EnsemblGRCh38hg38GRCh38
GRCh371947,835,432 - 47,850,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,532,211 - 52,537,112 (+)NCBINCBI36Build 36hg18NCBI36
Build 341952,532,210 - 52,537,112NCBI
Celera1944,644,255 - 44,649,165 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1944,259,688 - 44,269,832 (+)NCBIHuRef
CHM1_11947,837,590 - 47,847,456 (+)NCBICHM1_1
T2T-CHM13v2.01950,157,644 - 50,172,793 (+)NCBIT2T-CHM13v2.0
C5ar2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39715,968,512 - 15,978,079 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl715,968,510 - 15,978,079 (-)EnsemblGRCm39 Ensembl
GRCm38716,234,587 - 16,244,154 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,234,585 - 16,244,154 (-)EnsemblGRCm38mm10GRCm38
MGSCv37716,819,934 - 16,829,503 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,393,248 - 15,402,676 (-)NCBIMGSCv36mm8
Celera713,426,639 - 13,438,094 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.77NCBI
C5ar2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,058,557 - 86,073,583 (-)NCBIGRCr8
mRatBN7.2176,930,381 - 76,945,432 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,930,383 - 76,959,517 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,306,213 - 82,317,469 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,870,245 - 90,881,501 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,061,319 - 84,072,573 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,165,155 - 78,183,426 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,166,810 - 78,180,216 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,431,191 - 79,448,689 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera171,422,103 - 71,432,305 (-)NCBICelera
Cytogenetic Map1q21NCBI
C5AR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22053,479,345 - 53,490,765 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11955,349,344 - 55,360,769 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,320,315 - 44,331,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11952,976,049 - 52,985,506 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,984,180 - 52,985,193 (+)Ensemblpanpan1.1panPan2
C5AR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,644,195 - 108,652,628 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,644,945 - 108,645,958 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,125,820 - 108,134,033 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01109,170,540 - 109,178,740 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,171,219 - 109,172,232 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11108,837,514 - 108,845,719 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,481,845 - 108,490,056 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,350,410 - 109,358,627 (-)NCBIUU_Cfam_GSD_1.0
C5ar2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,419,605 - 19,432,306 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366641,047,997 - 1,049,016 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366641,047,997 - 1,050,612 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C5AR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,123,162 - 53,127,051 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,118,063 - 53,125,574 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,539,085 - 48,551,849 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C5AR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,659,576 - 40,672,267 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl640,671,056 - 40,672,069 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607320,393,696 - 20,406,527 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C5ar2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,403,621 - 6,404,631 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,403,002 - 6,411,399 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence


RefSeq Acc Id: XM_005413863   ⟹   XP_005413920
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555741,238,904 - 1,242,547 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509538   ⟹   XP_013364992
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555741,236,913 - 1,242,547 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509539   ⟹   XP_013364993
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555741,221,950 - 1,242,543 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005413920 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364992 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364993 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013364993   ⟸   XM_013509539
- Sequence:
RefSeq Acc Id: XP_013364992   ⟸   XM_013509538
- Sequence:
RefSeq Acc Id: XP_005413920   ⟸   XM_005413863
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC102008790 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-04-27 C5ar2  complement C5a receptor 2  C5ar2  complement component 5a receptor 2  Symbol and/or name change 5135510 APPROVED
2016-11-18 C5ar2  complement component 5a receptor 2  C5ar2  complement component 5a receptor 2  Data merged from RGD:8838045 737654 PROVISIONAL
2015-08-25 C5ar2  complement component 5a receptor 2  LOC102008790  uncharacterized LOC102008790  Symbol and/or name change 5135510 APPROVED