Mtcp1 (mature T cell proliferation 1)

Gene: Mtcp1 (mature T cell proliferation 1) Chinchilla lanigera

Analyze

Symbol:

Mtcp1

Name:

mature T cell proliferation 1

RGD ID:

8988674

Description:

ENCODES a protein that exhibits protein kinase binding (ortholog); protein serine/threonine kinase activator activity (ortholog); INVOLVED IN intracellular signal transduction (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); Barth syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

mature T-cell proliferation 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955594	614,422 - 620,142 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955594	614,422 - 620,142 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adrenoleukodystrophy (ISO)

autistic disorder (ISO)

Barth syndrome (ISO)

cerebral creatine deficiency syndrome 1 (ISO)

dyskeratosis congenita (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

favism (ISO)

immunodeficiency 33 (ISO)

megacolon (ISO)

paraplegia (ISO)

periventricular nodular heterotopia (ISO)

Splenomegaly (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular signal transduction (ISO)

Molecular Function

protein kinase binding (ISO)

protein serine/threonine kinase activator activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Mtcp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955594	614,422 - 620,142 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955594	614,422 - 620,142 (+)	NCBI	ChiLan1.0	ChiLan1.0

MTCP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	155,064,034 - 155,071,136 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	155,064,034 - 155,147,937 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	154,292,309 - 154,299,411 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	153,943,080 - 153,952,830 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	153,853,605 - 153,863,243	NCBI
Celera	X	154,451,026 - 154,458,264 (-)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	142,838,199 - 142,844,484 (-)	NCBI		HuRef
CHM1_1	X	154,203,936 - 154,211,174 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	153,300,442 - 153,307,544 (-)	NCBI		T2T-CHM13v2.0

Mtcp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	74,454,048 - 74,460,190 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	74,454,050 - 74,460,194 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	75,410,442 - 75,416,584 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	75,410,444 - 75,416,588 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	72,650,185 - 72,661,882 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	71,657,566 - 71,669,263 (-)	NCBI		MGSCv36	mm8
Celera	X	66,806,837 - 66,818,531 (-)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	38.22	NCBI

Mtcp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	142,416 - 144,482 (+)	NCBI		GRCr8
mRatBN7.2	18	126,189 - 130,123 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	18	411,159 - 411,934 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	411,455 - 411,849 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	456,394 - 457,178 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	108,513 - 109,372 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	119,280 - 122,065 (+)	NCBI		Celera
Cytogenetic Map	18	p13	NCBI

MTCP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	155,041,845 - 155,116,409 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	155,043,512 - 155,120,868 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	144,542,898 - 144,550,059 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	154,379,475 - 154,385,472 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	154,382,737 - 154,385,472 (-)	Ensembl	panpan1.1		panPan2

MTCP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	123,071,076 - 123,080,695 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	123,074,956 - 123,080,793 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	108,064,456 - 108,074,093 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	126,198,629 - 126,208,271 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	126,202,521 - 126,208,421 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	121,946,517 - 121,956,155 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	124,468,959 - 124,478,594 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	124,189,658 - 124,199,294 (-)	NCBI		UU_Cfam_GSD_1.0

Mtcp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	119,976,098 - 119,982,416 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936927	334,894 - 341,072 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936927	334,017 - 341,016 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MTCP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	125,377,350 - 125,381,178 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	125,372,941 - 125,377,910 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	143,105,105 - 143,110,085 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MTCP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	129,351,336 - 129,358,601 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	129,352,805 - 129,353,322 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	67,326,930 - 67,336,569 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mtcp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624963	215,462 - 218,187 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624963	212,524 - 218,187 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005414648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01076436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01026685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000000294 ⟹ ENSCLAP00000000267

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955594	614,422 - 620,142 (+)	Ensembl

RefSeq Acc Id:

XM_005414648 ⟹ XP_005414705

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955594	614,422 - 620,142 (+)	NCBI

Sequence:

show sequence

GGCGGAGCCCGGCCCAGCAGCACCTGGAAAGCGCCCGCGCCGGCTGGGGCAGGCGTGGCGGTTG
CGACGGAGGGCGGTGGCGGGCGGAGTCACAGCCCCCGAATCTCGTACAACTCTCCCTGGATCAC
TTCCGGTTACCGGCCCGCGTCTCGCAACTTCGGTTCTGGTGTCCTCGGCCCGGGCTGCCCCTTG
GCTTGCCCCGGCCTCCCGTCGCGATCTGGCTTGAGCTGCTCGGGGTGGGAGACCTGGAAGCGTT
AGCCTAGCTGTTCTCGAGGCGGAGTAATTAGCCCAAGAAACATTATATTCATGCTTAGGTGGAG
AAAAGCAGGGATAAAGTTGGAACCCAAAGCCCAGAATGGCAGGAGAGGATGTGGGGGCTCCACC
CGATCACCTCTGGGTTCACCAAGAGGGTATCTACCGCGACGAATACCAGCGTACATGGGTGGCC
GTCGTGGAAGAGGAGACGAGTTTCCTAAGGGCACGAGTCCAGCAAGTTCAGGTTCCCTTAGGTG
ATGCAGCTAGGCCAAGTCACCTTCTTACTTCCCAGCTACCTCTCATGTGGCAACTCTACCCAGA
GGAACGCTACATGGATAACAACTCTCGCTTGTGGCAGATACAGCATCATTTAATGGTCAGGGGA
GTACAGGAGCTGTTGCTTAAGCTTTTGCCTGATGATTAACCTGGTGCTGGGATTCTAGGAAGAT
ATGCTCCTCTGTTCTGTTCAGTATATGGCAATCTCTTCATCCACCACTGCAGTGCACCCACTCT
TGGGCCTGGGGGGAGGGAGTGGGTTGAAAAACTGCTCGAGAACATAGATGTTTAGGAAGGGTCA
TGAAGAACACTGCAAGTGACACTGCAGAGAGAGTTACACAGGCAGAAAGTGAGTCAACAAAGGC
ACTTAGTCAGGATACATAACTTGAAGTTGACTCCTTTGGAAATTGCCATAGAACCTTTAATGGA
CATCACCAGCTGGAACTGGGGTTTGATGAATCCCACAAAAGTCAGCACGTGCTACAGAACAGAT
GCCCTGATCACCAAGGACTTGGTACTGATTTAGAGAGAAGAGAGCAGCTCCTAGAAGCATCAAC
ATCTATTTGTCATTTATTTGCCCTGCAGAAATTCACCTGCCTTTCCTTCTCTCACCCTGTAAAT
ATCCTAGGTTTTGCTCCAGTGTTTCCCATCCCAGTACTGACCTAATTTGGATCTATTGAGAATT
TAGGGGGTTAGCAGGGGGAAAGGGTTATTTGTATTGCTGAAATCCGTTACAAAGGCCCCTAGGC
CTCTTTTCTTCCTGAAAATGTGTCTTCAGATTATTAGAAGTTGCTGATCAAAATTGTGAACACT
TAAATTTCTTCTCTGGTAACAACACTTCAAATAATCTGGTTTTCATAACAGCTCCAAAAATTAT
TTTCGCCGTTTACCTGGCACCTTTCTCAAGAAGTAATAGCACCAAATGTTGTTGATTCCTAGGA
AAGCATTTACTACCTGTGAAGGATTTTCTGAGTTAACCATAAGTTTATATACATTAAAACAAGC
TTTTACTTTTTAAAACAAGTCAAGCTAGGCGTGGTATTCCTAGCTACTTGGGAGGCTGAAGTAA
GAGTATTGATTGAGCCCCCATGTCCTGGGCCAGCCTGGATAACATATAGTAAGACCTCATTTAA
AAATGTCTTGAGAATAACAGCTACCATGTATCGAGTCCTTACTGCCTTCTAGGCACTGTACTAC
ATACTCTATATACTTTTTTCACATTTAGTCCTTCCTTCAAGGCTTCCAGGTAGGTATCACTCAC
GTTTTATACATGAATGGTAAAGAAAAAAGGCTCAAGGAATTGAATCATTTACCAAGTTTCCCCA
TGAGTCATAGACCTGGAGAGTGGGCCAGACCCCGTGAGTGGCAGCATCAGCTCCTGTAGCTCAA
CAGTACTTTACAATGTTCAAGATGAGTAGATTAAGGTTTTTTGTCTCATGTAAATCTATATCTT
CCAAACGTAATGAAATGGATATTATGAAAATACAGTTGGTTCATCATATACAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005414705	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000267
	ENSCLAP00000000267.1

RefSeq Acc Id:	XP_005414705 ⟸ XM_005414648
- UniProtKB:	A0A8C2UIN6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARVQQVQVPLGDAARPSHLLTSQ LPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD hide sequence

RefSeq Acc Id:

ENSCLAP00000000267 ⟸ ENSCLAT00000000294

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000239	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000294	ENTREZGENE
	ENSCLAT00000000294.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.15.10	UniProtKB/TrEMBL
InterPro	TCL1_MTCP1	UniProtKB/TrEMBL
	TCL1_MTCP1_sf	UniProtKB/TrEMBL
NCBI Gene	LOC102025305	ENTREZGENE
PANTHER	PROTEIN P13 MTCP-1	UniProtKB/TrEMBL
	PTHR14060	UniProtKB/TrEMBL
Pfam	TCL1_MTCP1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50904	UniProtKB/TrEMBL
UniProt	A0A8C2UIN6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-12-19	Mtcp1	mature T cell proliferation 1		mature T-cell proliferation 1	Symbol and/or name change	5135510	APPROVED
2015-08-25	Mtcp1	mature T-cell proliferation 1	LOC102025305	cx9C motif-containing protein 4-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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