Slc25a45 (solute carrier family 25 member 45) - Rat Genome Database

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Gene: Slc25a45 (solute carrier family 25 member 45) Chinchilla lanigera
Analyze
Symbol: Slc25a45
Name: solute carrier family 25 member 45
RGD ID: 8982372
Description: ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 25, member 45
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,854,708 - 19,866,538 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,854,935 - 19,864,585 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc25a45
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,854,708 - 19,866,538 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,854,935 - 19,864,585 (+)NCBIChiLan1.0ChiLan1.0
SLC25A45
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,375,192 - 65,383,701 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,375,192 - 65,383,701 (-)EnsemblGRCh38hg38GRCh38
GRCh371165,142,663 - 65,151,172 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,899,239 - 64,906,718 (-)NCBINCBI36Build 36hg18NCBI36
Celera1162,469,015 - 62,476,495 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,469,607 - 61,478,115 (-)NCBIHuRef
CHM1_11165,026,690 - 65,035,175 (-)NCBICHM1_1
T2T-CHM13v2.01165,368,510 - 65,377,020 (-)NCBIT2T-CHM13v2.0
Slc25a45
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,927,828 - 5,935,796 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,927,836 - 5,935,906 (+)EnsemblGRCm39 Ensembl
GRCm38195,877,801 - 5,885,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,877,808 - 5,885,878 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,878,466 - 5,885,768 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,878,466 - 5,885,768 (+)NCBIMGSCv36mm8
Celera195,748,528 - 5,755,830 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Slc25a45
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,595,536 - 212,603,786 (+)NCBIGRCr8
mRatBN7.21203,166,362 - 203,174,473 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,166,683 - 203,174,473 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,521,114 - 211,528,047 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,612,927 - 218,619,862 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,303,972 - 211,310,908 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,236,817 - 221,244,564 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,236,773 - 221,244,563 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,170,602 - 228,177,541 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,513,653 - 208,520,569 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,702,823 - 200,709,758 (+)NCBICelera
Cytogenetic Map1q43NCBI
SLC25A45
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,609,576 - 66,618,887 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,648,448 - 67,661,565 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,736,975 - 60,747,380 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,073,540 - 64,083,878 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,075,675 - 64,082,750 (-)Ensemblpanpan1.1panPan2
SLC25A45
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,810,842 - 51,817,230 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,811,039 - 51,816,094 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,418,367 - 50,424,780 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,852,146 - 52,858,559 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,852,368 - 52,857,423 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,947,836 - 51,954,249 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,520,919 - 51,527,331 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,315,150 - 52,321,563 (+)NCBIUU_Cfam_GSD_1.0
Slc25a45
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,594,932 - 7,601,978 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,037,880 - 4,043,266 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,038,080 - 4,043,268 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A45
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,851,617 - 6,857,880 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,851,101 - 6,857,886 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,984,003 - 5,991,449 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A45
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,857,346 - 8,865,517 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,856,977 - 8,865,358 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,153,418 - 106,175,119 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a45
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,008,344 - 21,014,732 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,008,292 - 21,015,084 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024267   ⟹   ENSCLAP00000024037
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542219,854,708 - 19,866,538 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000024268   ⟹   ENSCLAP00000024038
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542219,854,935 - 19,866,538 (+)Ensembl
RefSeq Acc Id: XM_005384496   ⟹   XP_005384553
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542219,854,935 - 19,864,585 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005384497   ⟹   XP_005384554
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542219,854,935 - 19,864,585 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384553 (Get FASTA)   NCBI Sequence Viewer  
  XP_005384554 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024037
  ENSCLAP00000024037.1
  ENSCLAP00000024038
  ENSCLAP00000024038.1
RefSeq Acc Id: XP_005384554   ⟸   XM_005384497
- UniProtKB: A0A8C2W4W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005384553   ⟸   XM_005384496
- UniProtKB: A0A8C2W4W5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000024037   ⟸   ENSCLAT00000024267
Ensembl Acc Id: ENSCLAP00000024038   ⟸   ENSCLAT00000024268


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016505 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024267 ENTREZGENE
  ENSCLAT00000024267.1 UniProtKB/TrEMBL
  ENSCLAT00000024268 ENTREZGENE
  ENSCLAT00000024268.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_Carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene Slc25a45 ENTREZGENE
PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 45 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A8C2W4W5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Slc25a45  solute carrier family 25 member 45    solute carrier family 25, member 45  Symbol and/or name change 5135510 APPROVED