SLC25A45 (solute carrier family 25 member 45) - Rat Genome Database

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Gene: SLC25A45 (solute carrier family 25 member 45) Pan paniscus
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Symbol: SLC25A45
Name: solute carrier family 25 member 45
RGD ID: 11840163
Description: ENCODES a protein that exhibits transmembrane transporter activity (inferred); INVOLVED IN transmembrane transport (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,609,576 - 66,618,887 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,648,448 - 67,661,565 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,736,975 - 60,747,380 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,073,540 - 64,083,878 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,075,675 - 64,082,750 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC25A45
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,609,576 - 66,618,887 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,648,448 - 67,661,565 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,736,975 - 60,747,380 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,073,540 - 64,083,878 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,075,675 - 64,082,750 (-)Ensemblpanpan1.1panPan2
SLC25A45
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,375,192 - 65,383,701 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,375,192 - 65,383,701 (-)EnsemblGRCh38hg38GRCh38
GRCh371165,142,663 - 65,151,172 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,899,239 - 64,906,718 (-)NCBINCBI36Build 36hg18NCBI36
Celera1162,469,015 - 62,476,495 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,469,607 - 61,478,115 (-)NCBIHuRef
CHM1_11165,026,690 - 65,035,175 (-)NCBICHM1_1
T2T-CHM13v2.01165,368,510 - 65,377,020 (-)NCBIT2T-CHM13v2.0
Slc25a45
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,927,828 - 5,935,796 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,927,836 - 5,935,906 (+)EnsemblGRCm39 Ensembl
GRCm38195,877,801 - 5,885,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,877,808 - 5,885,878 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,878,466 - 5,885,768 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,878,466 - 5,885,768 (+)NCBIMGSCv36mm8
Celera195,748,528 - 5,755,830 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Slc25a45
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,595,536 - 212,603,786 (+)NCBIGRCr8
mRatBN7.21203,166,362 - 203,174,473 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,166,683 - 203,174,473 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,521,114 - 211,528,047 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,612,927 - 218,619,862 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,303,972 - 211,310,908 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,236,817 - 221,244,564 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,236,773 - 221,244,563 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,170,602 - 228,177,541 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,513,653 - 208,520,569 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,702,823 - 200,709,758 (+)NCBICelera
Cytogenetic Map1q43NCBI
Slc25a45
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,854,708 - 19,866,538 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,854,935 - 19,864,585 (+)NCBIChiLan1.0ChiLan1.0
SLC25A45
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,810,842 - 51,817,230 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,811,039 - 51,816,094 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,418,367 - 50,424,780 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,852,146 - 52,858,559 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,852,368 - 52,857,423 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,947,836 - 51,954,249 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,520,919 - 51,527,331 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,315,150 - 52,321,563 (+)NCBIUU_Cfam_GSD_1.0
Slc25a45
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,594,932 - 7,601,978 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,037,880 - 4,043,266 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,038,080 - 4,043,268 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A45
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,851,617 - 6,857,880 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,851,101 - 6,857,886 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,984,003 - 5,991,449 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A45
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,857,346 - 8,865,517 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,856,977 - 8,865,358 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,153,418 - 106,175,119 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a45
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,008,344 - 21,014,732 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,008,292 - 21,015,084 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003828630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008954055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008954056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024930578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024930579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024930580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024930581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024930582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055094511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055094512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055094513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063608201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000046877   ⟹   ENSPPAP00000024052
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1164,075,675 - 64,082,750 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000046888   ⟹   ENSPPAP00000024063
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1164,075,675 - 64,082,564 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000046891   ⟹   ENSPPAP00000024066
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1164,076,882 - 64,082,129 (-)Ensembl
RefSeq Acc Id: XM_008954056   ⟹   XP_008952304
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,609,576 - 66,616,831 (-)NCBI
NHGRI_mPanPan11167,648,448 - 67,659,505 (-)NCBI
Mhudiblu_PPA_v01160,739,082 - 60,746,340 (-)NCBI
PanPan1.11164,075,675 - 64,082,564 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024930578   ⟹   XP_024786346
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,609,576 - 66,616,831 (-)NCBI
NHGRI_mPanPan11167,648,448 - 67,659,505 (-)NCBI
Mhudiblu_PPA_v01160,739,082 - 60,746,340 (-)NCBI
PanPan1.11164,075,675 - 64,082,564 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034932997   ⟹   XP_034788888
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,609,576 - 66,616,831 (-)NCBI
NHGRI_mPanPan11167,648,448 - 67,659,505 (-)NCBI
Mhudiblu_PPA_v01160,739,082 - 60,746,341 (-)NCBI
RefSeq Acc Id: XM_034932999   ⟹   XP_034788890
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,609,576 - 66,616,831 (-)NCBI
NHGRI_mPanPan11167,648,448 - 67,659,505 (-)NCBI
Mhudiblu_PPA_v01160,739,082 - 60,746,341 (-)NCBI
RefSeq Acc Id: XM_055094511   ⟹   XP_054950486
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,609,576 - 66,618,887 (-)NCBI
NHGRI_mPanPan11167,648,448 - 67,661,565 (-)NCBI
RefSeq Acc Id: XM_055094512   ⟹   XP_054950487
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,609,576 - 66,616,832 (-)NCBI
NHGRI_mPanPan11167,648,448 - 67,659,506 (-)NCBI
RefSeq Acc Id: XM_055094513   ⟹   XP_054950488
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,609,576 - 66,616,834 (-)NCBI
NHGRI_mPanPan11167,648,448 - 67,659,507 (-)NCBI
RefSeq Acc Id: XM_057299176   ⟹   XP_057155159
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,609,576 - 66,618,881 (-)NCBI
NHGRI_mPanPan11167,648,448 - 67,661,557 (-)NCBI
RefSeq Acc Id: XM_057299177   ⟹   XP_057155160
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,609,576 - 66,616,833 (-)NCBI
NHGRI_mPanPan11167,648,448 - 67,659,506 (-)NCBI
RefSeq Acc Id: XM_063608201   ⟹   XP_063464271
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,609,576 - 66,616,833 (-)NCBI
RefSeq Acc Id: XP_008952304   ⟸   XM_008954056
- Peptide Label: isoform X9
- UniProtKB: A0A2R9B3B5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024786346   ⟸   XM_024930578
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B381 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034788888   ⟸   XM_034932997
- Peptide Label: isoform X6
- UniProtKB: A0A2R9B381 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034788890   ⟸   XM_034932999
- Peptide Label: isoform X8
- UniProtKB: A0A2R9B381 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000024052   ⟸   ENSPPAT00000046877
RefSeq Acc Id: ENSPPAP00000024063   ⟸   ENSPPAT00000046888
RefSeq Acc Id: ENSPPAP00000024066   ⟸   ENSPPAT00000046891
RefSeq Acc Id: XP_054950486   ⟸   XM_055094511
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054950488   ⟸   XM_055094513
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054950487   ⟸   XM_055094512
- Peptide Label: isoform X4
RefSeq Acc Id: XP_057155159   ⟸   XM_057299176
- Peptide Label: isoform X3
RefSeq Acc Id: XP_057155160   ⟸   XM_057299177
- Peptide Label: isoform X5
- UniProtKB: A0A2R9B4Y1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063464271   ⟸   XM_063608201
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035170 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046877.1 UniProtKB/TrEMBL
  ENSPPAT00000046888.1 UniProtKB/TrEMBL
  ENSPPAT00000046891.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene SLC25A45 ENTREZGENE
PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 45 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A2R9B381 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B3B5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B4Y1 ENTREZGENE, UniProtKB/TrEMBL