Pid1 (phosphotyrosine interaction domain containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Pid1 (phosphotyrosine interaction domain containing 1) Chinchilla lanigera
Analyze
Symbol: Pid1
Name: phosphotyrosine interaction domain containing 1
RGD ID: 8976729
Description: INVOLVED IN cellular response to cytokine stimulus (ortholog); cellular response to fatty acid (ortholog); cellular response to interleukin-6 (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554535,680,211 - 5,911,589 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554535,680,418 - 5,913,236 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pid1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554535,680,211 - 5,911,589 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554535,680,418 - 5,913,236 (+)NCBIChiLan1.0ChiLan1.0
PID1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,023,973 - 229,271,287 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2228,850,526 - 229,271,287 (-)EnsemblGRCh38hg38GRCh38
GRCh372229,888,689 - 230,136,003 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,596,933 - 229,844,301 (-)NCBINCBI36Build 36hg18NCBI36
Celera2223,664,258 - 223,911,580 (-)NCBICelera
Cytogenetic Map2q36.3NCBI
HuRef2221,730,137 - 221,977,045 (-)NCBIHuRef
CHM1_12229,894,849 - 230,141,840 (-)NCBICHM1_1
T2T-CHM13v2.02229,506,578 - 229,753,882 (-)NCBIT2T-CHM13v2.0
Pid1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39184,014,014 - 84,317,550 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl184,014,017 - 84,341,901 (-)EnsemblGRCm39 Ensembl
GRCm38184,036,293 - 84,339,842 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl184,036,296 - 84,364,180 (-)EnsemblGRCm38mm10GRCm38
MGSCv37184,032,868 - 84,281,220 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36183,915,325 - 84,163,616 (-)NCBIMGSCv36mm8
Celera184,096,465 - 84,343,985 (-)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.14NCBI
Pid1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8992,732,471 - 92,951,168 (-)NCBIGRCr8
mRatBN7.2985,284,335 - 85,503,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl985,284,335 - 85,503,044 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx993,711,730 - 93,931,323 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0998,840,254 - 99,059,827 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0997,227,160 - 97,454,126 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0991,667,748 - 91,683,468 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl991,665,986 - 91,882,927 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0991,403,609 - 91,419,329 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4983,412,797 - 83,429,039 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera982,716,587 - 82,732,827 (-)NCBICelera
Cytogenetic Map9q35NCBI
PID1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213131,096,877 - 131,892,315 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B131,111,847 - 131,907,249 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B116,265,529 - 116,517,557 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B235,071,888 - 235,317,332 (-)NCBIpanpan1.1PanPan1.1panPan2
PID1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12541,424,307 - 41,649,736 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2541,425,811 - 41,652,672 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2542,048,042 - 42,273,688 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02541,678,727 - 41,905,113 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2541,678,745 - 41,907,940 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12541,607,636 - 41,823,824 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02541,449,548 - 41,675,112 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02541,622,258 - 41,848,314 (-)NCBIUU_Cfam_GSD_1.0
Pid1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303183,602,535 - 183,824,866 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365257,114,849 - 7,337,185 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365257,114,856 - 7,337,179 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PID1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15130,075,143 - 130,332,698 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115130,080,821 - 130,215,548 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215144,255,953 - 144,256,107 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PID1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110115,012,225 - 115,268,843 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10115,012,168 - 115,268,884 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604084,166,699 - 84,420,555 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pid1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248432,931,282 - 3,186,615 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248432,926,116 - 3,165,325 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000014884   ⟹   ENSCLAP00000014725
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554535,680,211 - 5,911,589 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000014885   ⟹   ENSCLAP00000014726
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554535,761,626 - 5,911,589 (+)Ensembl
RefSeq Acc Id: XM_013519988   ⟹   XP_013375442
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554535,680,418 - 5,913,236 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013375442 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014725.1
  ENSCLAP00000014726.1
RefSeq Acc Id: XP_013375442   ⟸   XM_013519988
- Sequence:
Ensembl Acc Id: ENSCLAP00000014726   ⟸   ENSCLAT00000014885
Ensembl Acc Id: ENSCLAP00000014725   ⟸   ENSCLAT00000014884
Protein Domains
PID


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010161 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014884.1 UniProtKB/TrEMBL
  ENSCLAT00000014885.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PID1 UniProtKB/TrEMBL
  PID1_PTB UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/TrEMBL
NCBI Gene Pid1 ENTREZGENE
PANTHER PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN UniProtKB/TrEMBL
  PTHR16265 UniProtKB/TrEMBL
Pfam PID_2 UniProtKB/TrEMBL
PROSITE PID UniProtKB/TrEMBL
SMART PTB UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A8C2YPZ0_CHILA UniProtKB/TrEMBL
  A0A8C2YPZ1_CHILA UniProtKB/TrEMBL