Znf652 (zinc finger protein 652) - Rat Genome Database

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Gene: Znf652 (zinc finger protein 652) Chinchilla lanigera
Analyze
Symbol: Znf652
Name: zinc finger protein 652
RGD ID: 8974782
Description: ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); trichodontoosseous syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545112,183,495 - 12,209,981 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545112,183,801 - 12,213,976 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Znf652
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545112,183,495 - 12,209,981 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545112,183,801 - 12,213,976 (+)NCBIChiLan1.0ChiLan1.0
ZNF652
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381749,288,117 - 49,362,473 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1749,289,206 - 49,362,473 (-)EnsemblGRCh38hg38GRCh38
GRCh371747,366,568 - 47,439,835 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361744,727,485 - 44,794,834 (-)NCBINCBI36Build 36hg18NCBI36
Build 341744,727,484 - 44,794,834NCBI
Celera1743,821,019 - 43,894,844 (-)NCBICelera
Cytogenetic Map17q21.32-q21.33NCBI
HuRef1742,731,966 - 42,805,178 (-)NCBIHuRef
CHM1_11747,431,795 - 47,504,982 (-)NCBICHM1_1
T2T-CHM13v2.01750,152,285 - 50,225,479 (-)NCBIT2T-CHM13v2.0
Zfp652
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,639,893 - 95,655,541 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1195,603,499 - 95,725,941 (+)EnsemblGRCm39 Ensembl
GRCm381195,749,067 - 95,764,715 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,712,673 - 95,835,115 (+)EnsemblGRCm38mm10GRCm38
MGSCv371195,610,381 - 95,626,029 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,565,090 - 95,588,442 (+)NCBIMGSCv36mm8
Celera11105,391,289 - 105,406,937 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
Zfp652
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81081,123,326 - 81,203,153 (+)NCBIGRCr8
mRatBN7.21080,626,555 - 80,706,397 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1080,649,400 - 80,698,674 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1085,632,051 - 85,647,274 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01085,130,094 - 85,145,302 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01080,522,451 - 80,537,492 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01083,556,809 - 83,572,014 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1083,556,809 - 83,572,019 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01083,360,955 - 83,376,160 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41084,452,884 - 84,468,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1079,452,109 - 79,467,314 (+)NCBICelera
Cytogenetic Map10q26NCBI
ZNF652
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,805,174 - 15,878,572 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,771,314 - 17,844,692 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0178,242,380 - 8,315,504 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1178,267,198 - 8,300,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl178,227,998 - 8,291,188 (+)Ensemblpanpan1.1panPan2
ZNF652
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1925,426,536 - 25,492,858 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl925,435,139 - 25,493,026 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha924,886,297 - 24,952,568 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0926,222,811 - 26,288,954 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl926,230,712 - 26,288,877 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1924,990,902 - 25,014,617 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0925,250,216 - 25,316,336 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0925,379,061 - 25,445,207 (-)NCBIUU_Cfam_GSD_1.0
Znf652
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,849,745 - 24,866,274 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649012,208,820 - 12,224,962 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649012,208,869 - 12,228,717 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF652
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,492,537 - 25,553,715 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,484,518 - 25,553,939 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,426,800 - 25,495,203 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF652
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11669,697,284 - 69,762,024 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1669,698,958 - 69,718,186 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607740,795,157 - 40,867,327 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf652
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247955,484,597 - 5,497,361 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247955,479,211 - 5,534,073 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000019675   ⟹   ENSCLAP00000019482
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545112,183,495 - 12,209,981 (+)Ensembl
RefSeq Acc Id: XM_013519111   ⟹   XP_013374565
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545112,183,801 - 12,213,976 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013374565 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019482.1
RefSeq Acc Id: XP_013374565   ⟸   XM_013519111
- Sequence:
Ensembl Acc Id: ENSCLAP00000019482   ⟸   ENSCLAT00000019675
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013368 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019675.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf652 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 652 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2YS80_CHILA UniProtKB/TrEMBL