ZNF652 (zinc finger protein 652) - Rat Genome Database

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Gene: ZNF652 (zinc finger protein 652) Pan paniscus
Analyze
Symbol: ZNF652
Name: zinc finger protein 652
RGD ID: 12035536
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,805,174 - 15,878,572 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,771,314 - 17,844,692 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0178,242,380 - 8,315,504 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1178,267,198 - 8,300,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl178,227,998 - 8,291,188 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF652
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,805,174 - 15,878,572 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,771,314 - 17,844,692 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0178,242,380 - 8,315,504 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1178,267,198 - 8,300,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl178,227,998 - 8,291,188 (+)Ensemblpanpan1.1panPan2
ZNF652
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381749,288,117 - 49,362,473 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1749,289,206 - 49,362,473 (-)EnsemblGRCh38hg38GRCh38
GRCh371747,366,568 - 47,439,835 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361744,727,485 - 44,794,834 (-)NCBINCBI36Build 36hg18NCBI36
Build 341744,727,484 - 44,794,834NCBI
Celera1743,821,019 - 43,894,844 (-)NCBICelera
Cytogenetic Map17q21.32-q21.33NCBI
HuRef1742,731,966 - 42,805,178 (-)NCBIHuRef
CHM1_11747,431,795 - 47,504,982 (-)NCBICHM1_1
T2T-CHM13v2.01750,152,285 - 50,225,479 (-)NCBIT2T-CHM13v2.0
Zfp652
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,639,893 - 95,655,541 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1195,603,499 - 95,725,941 (+)EnsemblGRCm39 Ensembl
GRCm381195,749,067 - 95,764,715 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,712,673 - 95,835,115 (+)EnsemblGRCm38mm10GRCm38
MGSCv371195,610,381 - 95,626,029 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,565,090 - 95,588,442 (+)NCBIMGSCv36mm8
Celera11105,391,289 - 105,406,937 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
Zfp652
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81081,123,326 - 81,203,153 (+)NCBIGRCr8
mRatBN7.21080,626,555 - 80,706,397 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1080,649,400 - 80,698,674 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1085,632,051 - 85,647,274 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01085,130,094 - 85,145,302 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01080,522,451 - 80,537,492 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01083,556,809 - 83,572,014 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1083,556,809 - 83,572,019 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01083,360,955 - 83,376,160 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41084,452,884 - 84,468,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1079,452,109 - 79,467,314 (+)NCBICelera
Cytogenetic Map10q26NCBI
Znf652
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545112,183,495 - 12,209,981 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545112,183,801 - 12,213,976 (+)NCBIChiLan1.0ChiLan1.0
ZNF652
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1925,426,536 - 25,492,858 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl925,435,139 - 25,493,026 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha924,886,297 - 24,952,568 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0926,222,811 - 26,288,954 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl926,230,712 - 26,288,877 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1924,990,902 - 25,014,617 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0925,250,216 - 25,316,336 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0925,379,061 - 25,445,207 (-)NCBIUU_Cfam_GSD_1.0
Znf652
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,849,745 - 24,866,274 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649012,208,820 - 12,224,962 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649012,208,869 - 12,228,717 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF652
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,492,537 - 25,553,715 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,484,518 - 25,553,939 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,426,800 - 25,495,203 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF652
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11669,697,284 - 69,762,024 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1669,698,958 - 69,718,186 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607740,795,157 - 40,867,327 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf652
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247955,484,597 - 5,497,361 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247955,479,211 - 5,534,073 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000027287   ⟹   ENSPPAP00000006263
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl178,227,998 - 8,291,188 (+)Ensembl
RefSeq Acc Id: XM_034941500   ⟹   XP_034797391
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,805,641 - 15,878,572 (+)NCBI
NHGRI_mPanPan11717,771,550 - 17,844,692 (+)NCBI
Mhudiblu_PPA_v0178,242,380 - 8,315,504 (+)NCBI
RefSeq Acc Id: XM_034941501   ⟹   XP_034797392
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,835,045 - 15,878,572 (+)NCBI
NHGRI_mPanPan11717,800,805 - 17,844,692 (+)NCBI
Mhudiblu_PPA_v0178,283,178 - 8,315,504 (+)NCBI
RefSeq Acc Id: XM_034941502   ⟹   XP_034797393
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,805,582 - 15,878,572 (+)NCBI
NHGRI_mPanPan11717,771,740 - 17,844,692 (+)NCBI
Mhudiblu_PPA_v0178,242,593 - 8,307,017 (+)NCBI
RefSeq Acc Id: XM_055102018   ⟹   XP_054957993
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,805,174 - 15,878,572 (+)NCBI
NHGRI_mPanPan11717,771,314 - 17,844,692 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034797391 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797392 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797393 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957993 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006263.1
RefSeq Acc Id: XP_034797391   ⟸   XM_034941500
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZMT9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797393   ⟸   XM_034941502
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034797392   ⟸   XM_034941501
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZMT9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000006263   ⟸   ENSPPAT00000027287
RefSeq Acc Id: XP_054957993   ⟸   XM_055102018
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZMT9 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000024727 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000027287.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100996165 UniProtKB/TrEMBL
NCBI Gene ZNF652 ENTREZGENE
PANTHER ZGC:113348-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 142 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R8ZMT9 ENTREZGENE, UniProtKB/TrEMBL