Symbol:
Szt2
Name:
SZT2 subunit of KICSTOR complex
RGD ID:
8964463
Description:
INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to glucose starvation (ortholog); central nervous system development (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); cryptorchidism (ortholog); FOUND IN GATOR1 complex (ortholog); GATOR2 complex (ortholog); KICSTOR complex (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
seizure threshold 2 homolog; seizure threshold 2 homolog (mouse); SZT2 subunit KICSTOR complex; SZT2, KICSTOR complex subunit
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955537 2,968,839 - 3,017,863 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955537 2,968,839 - 3,017,863 (+) NCBI ChiLan1.0 ChiLan1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Szt2 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955537 2,968,839 - 3,017,863 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955537 2,968,839 - 3,017,863 (+) NCBI ChiLan1.0 ChiLan1.0
SZT2 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 43,389,899 - 43,454,247 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 43,389,882 - 43,454,247 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 43,855,570 - 43,919,918 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 43,661,384 - 43,690,891 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 1 42,170,952 - 42,200,501 (+) NCBI Celera Cytogenetic Map 1 p34.2 NCBI HuRef 1 41,974,692 - 42,039,063 (+) NCBI HuRef CHM1_1 1 43,972,005 - 44,036,286 (+) NCBI CHM1_1 T2T-CHM13v2.0 1 43,260,449 - 43,324,500 (+) NCBI T2T-CHM13v2.0
Szt2 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 4 118,219,937 - 118,266,483 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 4 118,219,940 - 118,266,470 (-) Ensembl GRCm39 Ensembl GRCm38 4 118,362,740 - 118,409,286 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 4 118,362,743 - 118,409,273 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 4 118,035,350 - 118,081,868 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 4 117,860,675 - 117,872,979 (-) NCBI MGSCv36 mm8 Celera 4 117,085,125 - 117,131,926 (-) NCBI Celera Cytogenetic Map 4 D2.1 NCBI cM Map 4 54.61 NCBI
Szt2 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 137,182,648 - 137,229,349 (-) NCBI GRCr8 mRatBN7.2 5 131,897,250 - 131,943,953 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 131,897,275 - 131,943,904 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 5 137,192,120 - 137,238,384 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 137,190,875 - 137,238,354 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 140,979,672 - 141,025,913 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Rnor_5.0 5 142,699,676 - 142,711,040 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 138,843,690 - 138,890,241 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 5 138,849,231 - 138,871,344 (-) NCBI Celera 5 130,442,737 - 130,489,407 (-) NCBI Celera Cytogenetic Map 5 q36 NCBI
SZT2 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 183,358,884 - 183,420,155 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 182,500,263 - 182,561,533 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 1 42,691,292 - 42,754,046 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 1 44,068,936 - 44,130,135 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 1 44,068,998 - 44,129,456 (+) Ensembl panpan1.1 panPan2
SZT2 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 15 16,729,068 - 16,780,549 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 15 16,728,758 - 16,780,325 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 15 16,856,152 - 16,907,502 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 15 16,895,853 - 16,947,211 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 15 16,882,688 - 16,947,213 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 15 16,688,557 - 16,739,725 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 15 16,757,341 - 16,808,681 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 15 16,830,906 - 16,882,264 (-) NCBI UU_Cfam_GSD_1.0
Szt2 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405058 58,963,361 - 59,014,228 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936474 24,788,195 - 24,837,395 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936474 24,788,175 - 24,837,471 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SZT2 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 167,811,598 - 167,861,583 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 167,811,589 - 167,861,321 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 155,228,017 - 155,236,352 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SZT2
Szt2
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCLAT00000004825 ⟹ ENSCLAP00000004737
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955537 2,968,839 - 3,017,863 (+) Ensembl
RefSeq Acc Id:
XM_005410657 ⟹ XP_005410714
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955537 2,968,839 - 3,017,863 (+) NCBI
Sequence:
TTCCCACCGACTTCCGTTTCCTGCCGGGCGCCGAGGTAACCAGGTCAGAGGTCAGGAGTGGACCTGCCTAGAGCCCGGCCGGCGCGGGAGGGCTGAGTGATGGCCTCGGAGCGCGCGGAGCCGGAGGT
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RefSeq Acc Id:
XM_005410658 ⟹ XP_005410715
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955537 2,968,839 - 3,017,863 (+) NCBI
Sequence:
TTCCCACCGACTTCCGTTTCCTGCCGGGCGCCGAGGTAACCAGGTCAGAGGTCAGGAGTGGACCTGCCTAGAGCCCGGCCGGCGCGGGAGGGCTGAGTGATGGCCTCGGAGCGCGCGGAGCCGGAGGT
hide sequence
RefSeq Acc Id:
XM_013507749 ⟹ XP_013363203
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955537 2,985,283 - 3,017,863 (+) NCBI
Sequence:
TCTATGAAGTAACACATGGCAGATGCCGTCAGGAAAGGAGGCCAGCACTGGGAAGAAGGGACAG
hide sequence
RefSeq Acc Id:
XP_005410714 ⟸ XM_005410657
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C2USQ8 (UniProtKB/TrEMBL)
- Sequence:
MASERAEPEVEEAGQVFLLMKKDYRISRNVRLAWFLNHLHQTVQATPQELLLQSEQELEVLSVLPPGWQPDEPVVPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTSIVDDSTGEILFDEVFHALSRC
hide sequence
RefSeq Acc Id:
XP_005410715 ⟸ XM_005410658
- Peptide Label:
isoform X2
- Sequence:
MASERAEPEVEEAGQVFLLMKKDYRISRNVRLAWFLNHLHQTVQATPQELLLQSEQELEVLSVLPPGWQPDEPVVPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTSIVDDSTGEILFDEVFHALSRC
hide sequence
RefSeq Acc Id:
XP_013363203 ⟸ XM_013507749
- Peptide Label:
isoform X3
- Sequence:
MPSGKEASTGKKGQPKEQMDGLSCSDVASAYTTVGGVYSYDCSFGHVPNVELMKFIAMATFGSYLSTCPEPEPGSLGLTVYHRAFLLYSFLRSGEALNPEYYCGSQHRLFNEHLVSASSNPALALRRK
hide sequence
Ensembl Acc Id:
ENSCLAP00000004737 ⟸ ENSCLAT00000004825
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2019-11-26
Szt2
SZT2 subunit of KICSTOR complex
Szt2
SZT2 subunit KICSTOR complex
Symbol and/or name change
5135510 APPROVED
2019-01-29
Szt2
SZT2 subunit KICSTOR complex
SZT2, KICSTOR complex subunit
Symbol and/or name change
5135510 APPROVED
2017-05-23
Szt2
SZT2, KICSTOR complex subunit
seizure threshold 2 homolog (mouse)
Symbol and/or name change
5135510 APPROVED
