Klhl9 (kelch like family member 9) - Rat Genome Database

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Gene: Klhl9 (kelch like family member 9) Chinchilla lanigera
Analyze
Symbol: Klhl9
Name: kelch like family member 9
RGD ID: 8946861
Description: ENCODES a protein that exhibits cullin family protein binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); regulation of cytokinesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); midbody (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kelch-like family member 9; kelch-like protein 9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547212,851,352 - 12,854,245 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Klhl9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547212,851,352 - 12,854,245 (-)NCBIChiLan1.0ChiLan1.0
KLHL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38921,329,665 - 21,335,404 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl921,320,024 - 21,335,404 (-)EnsemblGRCh38hg38GRCh38
GRCh37921,329,664 - 21,335,403 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36921,321,018 - 21,325,429 (-)NCBINCBI36Build 36hg18NCBI36
Build 34921,321,019 - 21,325,371NCBI
Celera921,269,331 - 21,273,742 (-)NCBICelera
Cytogenetic Map9p21.3NCBI
HuRef921,294,476 - 21,298,889 (-)NCBIHuRef
CHM1_1921,330,834 - 21,335,247 (-)NCBICHM1_1
T2T-CHM13v2.0921,343,833 - 21,349,574 (-)NCBIT2T-CHM13v2.0
Klhl9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39488,636,529 - 88,640,745 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl488,636,529 - 88,640,702 (-)EnsemblGRCm39 Ensembl
GRCm38488,718,292 - 88,722,508 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl488,718,292 - 88,722,465 (-)EnsemblGRCm38mm10GRCm38
MGSCv37488,364,196 - 88,368,412 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36488,190,813 - 88,193,692 (-)NCBIMGSCv36mm8
Celera487,227,411 - 87,231,634 (-)NCBICelera
Cytogenetic Map4C4NCBI
cM Map442.02NCBI
Klhl9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85108,449,492 - 108,453,676 (-)NCBIGRCr8
mRatBN7.25103,333,747 - 103,337,931 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx5105,682,082 - 105,686,266 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05107,472,529 - 107,476,713 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05107,540,336 - 107,544,540 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05107,323,258 - 107,327,442 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5107,323,258 - 107,327,442 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05111,299,120 - 111,303,304 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45108,196,981 - 108,201,165 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15108,203,022 - 108,206,163 (-)NCBI
Celera5102,067,020 - 102,071,204 (-)NCBICelera
Cytogenetic Map5q32NCBI
KLHL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211103,197,022 - 103,201,449 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19103,202,967 - 103,207,394 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0921,191,847 - 21,196,242 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1921,809,412 - 21,813,812 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl921,811,230 - 21,813,251 (-)Ensemblpanpan1.1panPan2
KLHL9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11140,792,064 - 40,796,433 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1140,792,603 - 40,794,456 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1139,465,303 - 39,469,495 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01141,735,006 - 41,739,198 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11140,414,965 - 40,419,157 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01140,292,449 - 40,296,641 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01140,906,715 - 40,910,907 (+)NCBIUU_Cfam_GSD_1.0
Klhl9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947155,196,833 - 155,201,259 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366522,866,340 - 2,870,759 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLHL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,585,965 - 201,591,830 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,587,241 - 201,591,830 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,955,237 - 224,959,819 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Klhl9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473625,158,528 - 25,160,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473625,156,647 - 25,160,895 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005401171   ⟹   XP_005401228
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495547212,851,352 - 12,854,245 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005401228 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010780.1
RefSeq Acc Id: XP_005401228   ⟸   XM_005401171
- UniProtKB: A0A8C2V7A9 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007440 UniProtKB/TrEMBL
  ENSCLAG00000017467 ENTREZGENE
Ensembl Transcript ENSCLAT00000010913.1 UniProtKB/TrEMBL
  ENSCLAT00000025641 ENTREZGENE
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  Kelch-type beta propeller UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB-kelch_protein UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene LOC102007110 ENTREZGENE
PANTHER KELCH-LIKE PROTEIN 13 UniProtKB/TrEMBL
  LD33804P UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
PIRSF Kelch-like_protein_gigaxonin UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch UniProtKB/TrEMBL
Superfamily-SCOP Kelch motif UniProtKB/TrEMBL
  POZ domain UniProtKB/TrEMBL
UniProt A0A8C2V7A9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Klhl9  kelch like family member 9    kelch-like family member 9  Symbol and/or name change 5135510 APPROVED
2015-08-25 Klhl9  kelch-like family member 9  LOC102007110  kelch-like protein 9-like  Symbol and/or name change 5135510 APPROVED