Xkr8 (XK related 8) - Rat Genome Database

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Gene: Xkr8 (XK related 8) Chinchilla lanigera
Analyze
Symbol: Xkr8
Name: XK related 8
RGD ID: 8920562
Description: ENCODES a protein that exhibits phospholipid scramblase activity (ortholog); INVOLVED IN engulfment of apoptotic cell (ortholog); establishment of localization in cell (ortholog); neutrophil clearance (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: XK, Kell blood group complex subunit-related family, member 8; XK-related protein 8
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554527,141,201 - 7,146,443 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554527,141,088 - 7,148,571 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Xkr8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554527,141,201 - 7,146,443 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554527,141,088 - 7,148,571 (+)NCBIChiLan1.0ChiLan1.0
XKR8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,959,973 - 27,968,093 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,959,588 - 27,968,093 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,286,484 - 28,294,604 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,159,091 - 28,167,191 (+)NCBINCBI36Build 36hg18NCBI36
Celera126,682,123 - 26,690,220 (+)NCBICelera
Cytogenetic Map1p35.3NCBI
HuRef126,541,914 - 26,549,970 (+)NCBIHuRef
CHM1_1128,402,034 - 28,410,131 (+)NCBICHM1_1
T2T-CHM13v2.0127,801,810 - 27,809,927 (+)NCBIT2T-CHM13v2.0
Xkr8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,452,212 - 132,459,916 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,452,208 - 132,459,857 (-)EnsemblGRCm39 Ensembl
GRCm384132,724,901 - 132,732,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4132,724,897 - 132,732,546 (-)EnsemblGRCm38mm10GRCm38
MGSCv374132,280,819 - 132,288,461 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364131,996,980 - 132,004,622 (-)NCBIMGSCv36mm8
Celera4130,887,042 - 130,894,888 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map465.81NCBI
Xkr8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85150,222,058 - 150,229,184 (-)NCBIGRCr8
mRatBN7.25144,938,061 - 144,945,195 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5144,938,064 - 144,945,195 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5147,637,874 - 147,644,990 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05149,407,458 - 149,414,581 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05149,396,028 - 149,403,160 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05150,918,600 - 150,925,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5150,918,603 - 150,925,727 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05154,586,201 - 154,593,329 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,414,761 - 152,422,709 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15152,424,799 - 152,432,745 (+)NCBI
Celera5143,363,620 - 143,370,730 (-)NCBICelera
Cytogenetic Map5q36NCBI
XKR8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21198,885,387 - 198,894,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11198,002,312 - 198,011,111 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,219,682 - 27,228,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,259,403 - 28,267,871 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,259,993 - 28,266,978 (+)Ensemblpanpan1.1panPan2
XKR8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,419,950 - 72,426,315 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,418,872 - 72,450,737 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,997,510 - 69,003,871 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,980,171 - 72,986,460 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,980,298 - 72,987,341 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,807,305 - 69,813,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0270,817,795 - 70,824,076 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,813,950 - 71,820,234 (-)NCBIUU_Cfam_GSD_1.0
Xkr8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505846,355,929 - 46,363,093 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647412,180,424 - 12,187,876 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647412,180,741 - 12,187,904 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XKR8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl685,085,066 - 85,160,234 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1685,084,641 - 85,093,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2678,625,198 - 78,633,739 (+)NCBISscrofa10.2Sscrofa10.2susScr3
XKR8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120104,830,967 - 104,851,913 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20104,842,157 - 104,851,280 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603311,622,676 - 11,631,496 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xkr8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476411,809,176 - 11,816,960 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476411,809,146 - 11,816,878 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000016579   ⟹   ENSCLAP00000016415
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554527,141,201 - 7,146,443 (+)Ensembl
RefSeq Acc Id: XM_013519543   ⟹   XP_013374997
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554527,141,088 - 7,148,571 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013374997 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016415.1
RefSeq Acc Id: XP_013374997   ⟸   XM_013519543
- UniProtKB: A0A8C2VPK9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000016415   ⟸   ENSCLAT00000016579


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011287 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016579.1 UniProtKB/TrEMBL
InterPro XK-rel UniProtKB/TrEMBL
  XK-related_scramblase UniProtKB/TrEMBL
NCBI Gene Xkr8 ENTREZGENE
PANTHER XK-RELATED PROTEIN UniProtKB/TrEMBL
  XK-RELATED PROTEIN 8 UniProtKB/TrEMBL
Pfam XK-related UniProtKB/TrEMBL
UniProt A0A8C2VPK9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Xkr8  XK related 8    XK, Kell blood group complex subunit-related family, member 8  Symbol and/or name change 5135510 APPROVED