XKR8 (XK related 8) - Rat Genome Database

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Gene: XKR8 (XK related 8) Pan paniscus
Analyze
Symbol: XKR8
Name: XK related 8
RGD ID: 12009076
Description: ENCODES a protein that exhibits phospholipid scramblase activity (inferred); INVOLVED IN establishment of localization in cell (ortholog); phosphatidylserine exposure on apoptotic cell surface (ortholog); tolerance induction to self antigen (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: XK-related protein 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21198,885,387 - 198,894,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11198,002,312 - 198,011,111 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,219,682 - 27,228,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,259,403 - 28,267,871 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,259,993 - 28,266,978 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
XKR8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21198,885,387 - 198,894,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11198,002,312 - 198,011,111 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,219,682 - 27,228,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,259,403 - 28,267,871 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,259,993 - 28,266,978 (+)Ensemblpanpan1.1panPan2
XKR8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,959,973 - 27,968,093 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,959,588 - 27,968,093 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,286,484 - 28,294,604 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,159,091 - 28,167,191 (+)NCBINCBI36Build 36hg18NCBI36
Celera126,682,123 - 26,690,220 (+)NCBICelera
Cytogenetic Map1p35.3NCBI
HuRef126,541,914 - 26,549,970 (+)NCBIHuRef
CHM1_1128,402,034 - 28,410,131 (+)NCBICHM1_1
T2T-CHM13v2.0127,801,810 - 27,809,927 (+)NCBIT2T-CHM13v2.0
Xkr8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,452,212 - 132,459,916 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,452,208 - 132,459,857 (-)EnsemblGRCm39 Ensembl
GRCm384132,724,901 - 132,732,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4132,724,897 - 132,732,546 (-)EnsemblGRCm38mm10GRCm38
MGSCv374132,280,819 - 132,288,461 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364131,996,980 - 132,004,622 (-)NCBIMGSCv36mm8
Celera4130,887,042 - 130,894,888 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map465.81NCBI
Xkr8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85150,222,058 - 150,229,184 (-)NCBIGRCr8
mRatBN7.25144,938,061 - 144,945,195 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5144,938,064 - 144,945,195 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5147,637,874 - 147,644,990 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05149,407,458 - 149,414,581 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05149,396,028 - 149,403,160 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05150,918,600 - 150,925,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5150,918,603 - 150,925,727 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05154,586,201 - 154,593,329 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,414,761 - 152,422,709 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15152,424,799 - 152,432,745 (+)NCBI
Celera5143,363,620 - 143,370,730 (-)NCBICelera
Cytogenetic Map5q36NCBI
Xkr8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554527,141,201 - 7,146,443 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554527,141,088 - 7,148,571 (+)NCBIChiLan1.0ChiLan1.0
XKR8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,419,950 - 72,426,315 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,418,872 - 72,450,737 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,997,510 - 69,003,871 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,980,171 - 72,986,460 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,980,298 - 72,987,341 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,807,305 - 69,813,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0270,817,795 - 70,824,076 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,813,950 - 71,820,234 (-)NCBIUU_Cfam_GSD_1.0
Xkr8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505846,355,929 - 46,363,093 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647412,180,424 - 12,187,876 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647412,180,741 - 12,187,904 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XKR8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl685,085,066 - 85,160,234 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1685,084,641 - 85,093,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2678,625,198 - 78,633,739 (+)NCBISscrofa10.2Sscrofa10.2susScr3
XKR8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120104,830,967 - 104,851,913 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20104,842,157 - 104,851,280 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603311,622,676 - 11,631,496 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xkr8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476411,809,176 - 11,816,960 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476411,809,146 - 11,816,878 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000041080   ⟹   ENSPPAP00000018350
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl128,259,993 - 28,266,978 (+)Ensembl
RefSeq Acc Id: XM_034959422   ⟹   XP_034815313
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21198,885,387 - 198,894,183 (-)NCBI
NHGRI_mPanPan11198,002,312 - 198,011,111 (-)NCBI
Mhudiblu_PPA_v0127,219,682 - 27,228,381 (+)NCBI
RefSeq Acc Id: XM_034959425   ⟹   XP_034815316
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21198,885,387 - 198,894,149 (-)NCBI
NHGRI_mPanPan11198,002,312 - 198,011,111 (-)NCBI
Mhudiblu_PPA_v0127,219,701 - 27,228,381 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034815313 (Get FASTA)   NCBI Sequence Viewer  
  XP_034815316 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018350.1
RefSeq Acc Id: XP_034815313   ⟸   XM_034959422
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034815316   ⟸   XM_034959425
- Peptide Label: isoform X2
- UniProtKB: A0A2R9ARF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000018350   ⟸   ENSPPAT00000041080


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032312 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041080.1 UniProtKB/TrEMBL
InterPro XK-rel UniProtKB/TrEMBL
NCBI Gene XKR8 ENTREZGENE
PANTHER XK-RELATED PROTEIN UniProtKB/TrEMBL
  XK-RELATED PROTEIN 8 UniProtKB/TrEMBL
Pfam XK-related UniProtKB/TrEMBL
UniProt A0A2R9ARF7 ENTREZGENE, UniProtKB/TrEMBL