Plekhd1 (pleckstrin homology and coiled-coil domain containing D1) - Rat Genome Database

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Gene: Plekhd1 (pleckstrin homology and coiled-coil domain containing D1) Chinchilla lanigera
Analyze
Symbol: Plekhd1
Name: pleckstrin homology and coiled-coil domain containing D1
RGD ID: 8914210
Description: ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pleckstrin homology domain containing, family D (with coiled-coil domains) member 1; pleckstrin homology domain-containing family D member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955466852,958 - 878,814 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955466853,902 - 878,813 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Plekhd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955466852,958 - 878,814 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955466853,902 - 878,813 (-)NCBIChiLan1.0ChiLan1.0
PLEKHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381469,467,744 - 69,531,551 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1469,484,692 - 69,531,551 (+)EnsemblGRCh38hg38GRCh38
GRCh371469,951,445 - 69,998,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361469,021,162 - 69,089,065 (+)NCBINCBI36Build 36hg18NCBI36
Celera1450,015,608 - 50,059,327 (+)NCBICelera
Cytogenetic Map14q24.1NCBI
HuRef1450,120,506 - 50,164,233 (+)NCBIHuRef
CHM1_11469,889,605 - 69,933,346 (+)NCBICHM1_1
T2T-CHM13v2.01463,680,891 - 63,744,716 (+)NCBIT2T-CHM13v2.0
Plekhd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391280,739,375 - 80,770,990 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1280,739,365 - 80,770,988 (+)EnsemblGRCm39 Ensembl
GRCm381280,692,601 - 80,724,216 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1280,692,591 - 80,724,214 (+)EnsemblGRCm38mm10GRCm38
MGSCv371281,793,588 - 81,825,203 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361281,611,433 - 81,643,062 (+)NCBIMGSCv36mm8
Celera1282,157,906 - 82,189,561 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1236.96NCBI
Plekhd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86106,071,966 - 106,103,250 (+)NCBIGRCr8
mRatBN7.26100,340,655 - 100,371,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6100,340,655 - 100,371,941 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6100,507,523 - 100,538,373 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06100,807,226 - 100,838,072 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06100,181,462 - 100,213,140 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06104,340,114 - 104,371,162 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6104,340,206 - 104,371,335 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06112,512,063 - 112,543,111 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46104,457,412 - 104,488,508 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera698,198,936 - 98,229,968 (+)NCBICelera
Cytogenetic Map6q24NCBI
PLEKHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21570,609,529 - 70,656,060 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11469,826,043 - 69,872,573 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01450,079,139 - 50,125,677 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11468,952,074 - 68,996,526 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1468,952,074 - 68,996,526 (+)Ensemblpanpan1.1panPan2
PLEKHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1843,280,201 - 43,308,671 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl843,279,447 - 43,307,320 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha842,969,688 - 43,001,905 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0843,510,120 - 43,542,350 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl843,509,915 - 43,538,479 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1843,124,748 - 43,157,173 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0843,199,035 - 43,231,147 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0843,558,549 - 43,590,767 (+)NCBIUU_Cfam_GSD_1.0
Plekhd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864061,461,805 - 61,500,078 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649512,691,524 - 12,730,227 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649512,691,693 - 12,729,776 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLEKHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl793,152,946 - 93,187,598 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1793,152,946 - 93,187,730 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2799,429,665 - 99,464,317 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLEKHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12446,722,510 - 46,768,134 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2446,722,657 - 46,770,343 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605334,943,923 - 34,998,826 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plekhd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473431,556,906 - 31,594,990 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473431,556,897 - 31,593,247 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007084   ⟹   ENSCLAP00000006972
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955466852,958 - 878,814 (-)Ensembl
RefSeq Acc Id: XM_013521969   ⟹   XP_013377423
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955466853,902 - 878,813 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013377423 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000006972
  ENSCLAP00000006972.1
Reference Protein Sequences
RefSeq Acc Id: XP_013377423   ⟸   XM_013521969
- UniProtKB: A0A8C2YL99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000006972   ⟸   ENSCLAT00000007084
Protein Domains
PH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004907 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007084 ENTREZGENE
  ENSCLAT00000007084.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
NCBI Gene Plekhd1 ENTREZGENE
PANTHER PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY D MEMBER 1 UniProtKB/TrEMBL
  SWAP-70 RECOMBINASE UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A8C2YL99 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Plekhd1  pleckstrin homology and coiled-coil domain containing D1    pleckstrin homology domain containing, family D (with coiled-coil domains) member 1  Symbol and/or name change 5135510 APPROVED