Igsf3 (immunoglobulin superfamily member 3) - Rat Genome Database

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Gene: Igsf3 (immunoglobulin superfamily member 3) Chinchilla lanigera
Analyze
Symbol: Igsf3
Name: immunoglobulin superfamily member 3
RGD ID: 8905476
Description: INVOLVED IN lacrimal gland development (ortholog); ASSOCIATED WITH esophageal atresia (ortholog); lacrimal duct obstruction (ortholog); Lacrimal Puncta Agenesis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: immunoglobulin superfamily, member 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543519,706,516 - 19,795,432 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543519,703,952 - 19,796,065 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Igsf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543519,706,516 - 19,795,432 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543519,703,952 - 19,796,065 (-)NCBIChiLan1.0ChiLan1.0
IGSF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381116,574,398 - 116,667,755 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1116,574,399 - 116,667,755 (-)EnsemblGRCh38hg38GRCh38
GRCh371117,117,020 - 117,210,377 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361116,918,554 - 117,011,837 (-)NCBINCBI36Build 36hg18NCBI36
Build 341116,829,072 - 116,922,356NCBI
Celera1115,345,546 - 115,438,824 (-)NCBICelera
Cytogenetic Map1p13.1NCBI
HuRef1114,976,619 - 115,069,496 (-)NCBIHuRef
CHM1_11117,231,888 - 117,325,242 (-)NCBICHM1_1
T2T-CHM13v2.01116,584,842 - 116,678,201 (-)NCBIT2T-CHM13v2.0
Igsf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393101,284,306 - 101,370,375 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3101,284,399 - 101,370,375 (+)EnsemblGRCm39 Ensembl
GRCm383101,376,672 - 101,463,060 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3101,377,083 - 101,463,059 (+)EnsemblGRCm38mm10GRCm38
MGSCv373101,181,048 - 101,266,983 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363101,507,374 - 101,589,930 (+)NCBIMGSCv36mm8
Celera3103,591,266 - 103,677,320 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map344.3NCBI
Igsf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82191,499,972 - 191,588,249 (+)NCBIGRCr8
mRatBN7.22188,811,394 - 188,899,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2188,811,380 - 188,899,645 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2196,446,346 - 196,532,971 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02194,298,571 - 194,385,194 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02189,123,271 - 189,209,768 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02203,768,364 - 203,855,573 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2203,768,117 - 203,855,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02223,212,084 - 223,299,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42196,495,204 - 196,530,084 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12196,408,513 - 196,490,262 (+)NCBI
Celera2181,251,108 - 181,337,130 (+)NCBICelera
Cytogenetic Map2q34NCBI
IGSF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21109,226,961 - 109,321,591 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11108,826,436 - 108,921,034 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0185,852,214 - 85,989,556 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11121,015,399 - 121,042,193 (+)NCBIpanpan1.1PanPan1.1panPan2
IGSF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11754,015,154 - 54,106,219 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1754,017,456 - 54,106,535 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1753,662,244 - 53,754,007 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01754,896,430 - 54,988,067 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1754,897,791 - 54,988,038 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11753,933,532 - 54,025,256 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01753,969,554 - 54,061,345 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01754,543,101 - 54,634,597 (-)NCBIUU_Cfam_GSD_1.0
Igsf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505812,662,249 - 12,751,349 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366271,737,337 - 1,826,757 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366271,738,140 - 1,826,255 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IGSF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4103,994,390 - 104,166,988 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14104,044,784 - 104,167,173 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24114,056,410 - 114,166,170 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IGSF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12017,054,915 - 17,149,119 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2017,055,617 - 17,149,166 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603819,746,069 - 19,840,214 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Igsf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477212,263,123 - 12,354,321 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477212,263,495 - 12,354,379 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000010123   ⟹   ENSCLAP00000009993
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543519,706,516 - 19,795,432 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000010124   ⟹   ENSCLAP00000009994
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543519,706,746 - 19,795,432 (-)Ensembl
RefSeq Acc Id: XM_005389042   ⟹   XP_005389099
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543519,703,952 - 19,796,065 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389099 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009993.1
  ENSCLAP00000009994
  ENSCLAP00000009994.1
RefSeq Acc Id: XP_005389099   ⟸   XM_005389042
- UniProtKB: A0A8C2V458 (UniProtKB/TrEMBL),   A0A8C2V426 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000009994   ⟸   ENSCLAT00000010124
Ensembl Acc Id: ENSCLAP00000009993   ⟸   ENSCLAT00000010123
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006923 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010123.1 UniProtKB/TrEMBL
  ENSCLAT00000010124 ENTREZGENE
  ENSCLAT00000010124.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  IgSF_V-set/TM_domain UniProtKB/TrEMBL
NCBI Gene Igsf3 ENTREZGENE
PANTHER IMMUNOGLOBULIN SUPERFAMILY MEMBER 3 UniProtKB/TrEMBL
  V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C2V426 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V458 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Igsf3  immunoglobulin superfamily member 3    immunoglobulin superfamily, member 3  Symbol and/or name change 5135510 APPROVED