Fam174b (family with sequence similarity 174 member B) - Rat Genome Database

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Gene: Fam174b (family with sequence similarity 174 member B) Chinchilla lanigera
Analyze
Symbol: Fam174b
Name: family with sequence similarity 174 member B
RGD ID: 8894776
Description: INVOLVED IN Golgi organization (ortholog); FOUND IN Golgi apparatus (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: family with sequence similarity 174, member B; membrane protein FAM174B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541620,900,730 - 20,926,529 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541620,899,846 - 20,926,531 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Fam174b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541620,900,730 - 20,926,529 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541620,899,846 - 20,926,531 (-)NCBIChiLan1.0ChiLan1.0
FAM174B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381592,617,448 - 92,655,775 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1592,617,448 - 92,809,884 (-)EnsemblGRCh38hg38GRCh38
GRCh371593,160,678 - 93,199,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361590,961,682 - 91,000,035 (-)NCBINCBI36Build 36hg18NCBI36
Celera1569,572,621 - 69,610,827 (-)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1569,297,716 - 69,335,942 (-)NCBIHuRef
CHM1_11593,001,739 - 93,040,012 (-)NCBICHM1_1
T2T-CHM13v2.01590,379,890 - 90,418,117 (-)NCBIT2T-CHM13v2.0
Fam174b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39773,390,055 - 73,426,667 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl773,390,050 - 73,426,667 (+)EnsemblGRCm39 Ensembl
GRCm38773,740,307 - 73,776,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl773,740,302 - 73,776,919 (+)EnsemblGRCm38mm10GRCm38
MGSCv37780,885,193 - 80,921,805 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera771,186,731 - 71,223,572 (+)NCBICelera
Cytogenetic Map7D1NCBI
cM Map742.24NCBI
Fam174b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81136,925,162 - 137,006,082 (+)NCBIGRCr8
mRatBN7.21127,515,393 - 127,618,591 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1127,508,068 - 127,516,078 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1127,514,041 - 127,596,128 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1135,490,081 - 135,535,880 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01142,660,212 - 142,706,008 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01135,501,717 - 135,554,904 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01135,081,596 - 135,180,266 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1135,083,974 - 135,162,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01136,107,161 - 136,197,902 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41128,936,112 - 128,989,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1119,641,416 - 119,740,642 (+)NCBICelera
Cytogenetic Map1q31NCBI
FAM174B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21682,168,046 - 82,206,687 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11585,862,645 - 85,907,419 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01571,306,617 - 71,345,402 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11590,502,598 - 90,540,788 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1590,502,814 - 90,540,745 (-)Ensemblpanpan1.1panPan2
FAM174B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1347,403,458 - 47,455,199 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha350,114,298 - 50,157,336 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0347,824,209 - 47,867,269 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl347,824,209 - 47,865,552 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1347,340,374 - 47,383,359 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0347,572,416 - 47,615,430 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0347,904,655 - 47,947,656 (+)NCBIUU_Cfam_GSD_1.0
FAM174B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl786,268,959 - 86,304,979 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1786,181,970 - 86,356,953 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2792,211,792 - 92,300,016 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM174B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12911,173,622 - 11,227,910 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605935,442,943 - 35,483,725 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam174b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476811,053,296 - 11,080,732 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476811,053,296 - 11,081,825 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000025046   ⟹   ENSCLAP00000024806
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541620,900,730 - 20,926,529 (-)Ensembl
RefSeq Acc Id: XM_005381705   ⟹   XP_005381762
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541620,899,846 - 20,926,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512628   ⟹   XP_013368082
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541620,908,213 - 20,926,531 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381762 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368082 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024806
  ENSCLAP00000024806.1
RefSeq Acc Id: XP_005381762   ⟸   XM_005381705
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013368082   ⟸   XM_013512628
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000024806   ⟸   ENSCLAT00000025046


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017030 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025046 ENTREZGENE
  ENSCLAT00000025046.1 UniProtKB/TrEMBL
InterPro DUF1180 UniProtKB/TrEMBL
NCBI Gene Fam174b ENTREZGENE
PANTHER MEMBRANE PROTEIN FAM174B UniProtKB/TrEMBL
  PTHR28607 UniProtKB/TrEMBL
Pfam DUF1180 UniProtKB/TrEMBL
UniProt A0A8C2W6L7_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Fam174b  family with sequence similarity 174 member B    family with sequence similarity 174, member B  Symbol and/or name change 5135510 APPROVED