Jagn1 (jagunal homolog 1) - Rat Genome Database

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Gene: Jagn1 (jagunal homolog 1) Chinchilla lanigera
Analyze
Symbol: Jagn1
Name: jagunal homolog 1
RGD ID: 8892207
Description: INVOLVED IN defense response to fungus (ortholog); granulocyte colony-stimulating factor signaling pathway (ortholog); negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); Candidiasis, Familial, 9 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555611,388,592 - 1,392,107 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555611,388,592 - 1,392,107 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Jagn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555611,388,592 - 1,392,107 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555611,388,592 - 1,392,107 (+)NCBIChiLan1.0ChiLan1.0
JAGN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3839,890,610 - 9,894,349 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl39,890,574 - 9,894,349 (+)EnsemblGRCh38hg38GRCh38
GRCh3739,932,294 - 9,936,033 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3639,907,272 - 9,911,029 (+)NCBINCBI36Build 36hg18NCBI36
Build 3439,907,271 - 9,911,029NCBI
Celera39,867,730 - 9,871,500 (+)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef39,868,607 - 9,872,377 (+)NCBIHuRef
CHM1_139,882,427 - 9,886,189 (+)NCBICHM1_1
T2T-CHM13v2.039,882,615 - 9,886,362 (+)NCBIT2T-CHM13v2.0
Jagn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396113,419,478 - 113,425,190 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6113,419,530 - 113,425,190 (+)EnsemblGRCm39 Ensembl
GRCm386113,442,517 - 113,448,229 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6113,442,569 - 113,448,229 (+)EnsemblGRCm38mm10GRCm38
MGSCv376113,392,629 - 113,398,221 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366113,408,412 - 113,414,004 (+)NCBIMGSCv36mm8
Celera6115,269,598 - 115,275,190 (+)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.76NCBI
Jagn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84148,147,213 - 148,151,915 (+)NCBIGRCr8
mRatBN7.24146,591,577 - 146,596,287 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4146,591,510 - 146,596,288 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4151,975,486 - 151,980,159 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04147,756,333 - 147,761,006 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04146,377,916 - 146,382,566 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04145,399,885 - 145,404,605 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4145,399,913 - 145,404,617 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04208,697,287 - 208,701,991 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4135,147,688 - 135,152,362 (+)NCBICelera
Cytogenetic Map4q42NCBI
JAGN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v229,894,619 - 9,897,922 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan139,899,397 - 9,902,681 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v039,835,123 - 9,838,398 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1310,183,760 - 10,187,064 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl310,183,760 - 10,187,064 (+)Ensemblpanpan1.1panPan2
JAGN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1208,372,981 - 8,376,089 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl208,373,316 - 8,376,085 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha208,406,663 - 8,409,852 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0208,402,220 - 8,405,411 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl208,402,229 - 8,405,333 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1208,124,553 - 8,127,743 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0208,470,019 - 8,473,199 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0208,443,116 - 8,446,297 (-)NCBIUU_Cfam_GSD_1.0
Jagn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494215,606,195 - 15,609,027 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366023,298,348 - 3,303,555 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366023,300,685 - 3,303,509 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JAGN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11366,154,855 - 66,158,329 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21373,229,981 - 73,254,079 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JAGN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12245,917,319 - 45,921,082 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2245,917,444 - 45,920,250 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041120,642,931 - 120,646,710 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000000937   ⟹   ENSCLAP00000000900
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555611,388,592 - 1,392,107 (+)Ensembl
RefSeq Acc Id: XM_005413051   ⟹   XP_005413108
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555611,388,592 - 1,392,107 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509092   ⟹   XP_013364546
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555611,389,610 - 1,392,107 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005413108 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364546 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000900
  ENSCLAP00000000900.1
RefSeq Acc Id: XP_005413108   ⟸   XM_005413051
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UNA9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364546   ⟸   XM_013509092
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000000900   ⟸   ENSCLAT00000000937


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000700 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000937 ENTREZGENE
  ENSCLAT00000000937.1 UniProtKB/TrEMBL
InterPro Jagunal UniProtKB/TrEMBL
NCBI Gene Jagn1 ENTREZGENE
PANTHER PROTEIN JAGUNAL HOMOLOG 1 UniProtKB/TrEMBL
  PTHR20955 UniProtKB/TrEMBL
Pfam Jagunal UniProtKB/TrEMBL
UniProt A0A8C2UNA9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Jagn1  jagunal homolog 1    jagunal homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED