Shkbp1 (SH3KBP1 binding protein 1) - Rat Genome Database

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Gene: Shkbp1 (SH3KBP1 binding protein 1) Chinchilla lanigera
Analyze
Symbol: Shkbp1
Name: SH3KBP1 binding protein 1
RGD ID: 8891437
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of epidermal growth factor receptor signaling pathway (ortholog); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SH3KBP1-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955578716,632 - 730,593 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955578716,818 - 730,593 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Shkbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955578716,632 - 730,593 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955578716,818 - 730,593 (-)NCBIChiLan1.0ChiLan1.0
SHKBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,576,873 - 40,591,397 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,576,853 - 40,591,399 (+)EnsemblGRCh38hg38GRCh38
GRCh371941,082,779 - 41,097,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,774,630 - 45,789,141 (+)NCBINCBI36Build 36hg18NCBI36
Build 341945,774,629 - 45,789,141NCBI
Celera1937,881,810 - 37,896,356 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,517,305 - 37,531,390 (+)NCBIHuRef
CHM1_11941,082,689 - 41,097,190 (+)NCBICHM1_1
T2T-CHM13v2.01943,397,488 - 43,411,988 (+)NCBIT2T-CHM13v2.0
Shkbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,041,553 - 27,055,440 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,041,558 - 27,055,444 (-)EnsemblGRCm39 Ensembl
GRCm38727,342,128 - 27,356,015 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,342,133 - 27,356,019 (-)EnsemblGRCm38mm10GRCm38
MGSCv37728,127,152 - 28,141,027 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36727,050,897 - 27,064,779 (-)NCBIMGSCv36mm8
Celera721,921,926 - 21,935,907 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.88NCBI
Shkbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8191,764,426 - 91,777,959 (-)NCBIGRCr8
mRatBN7.2182,636,797 - 82,650,330 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,636,797 - 82,650,375 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx188,039,474 - 88,052,984 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0196,526,308 - 96,539,792 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0189,795,329 - 89,808,840 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0184,154,703 - 84,168,074 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,154,703 - 84,168,074 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,365,817 - 85,379,188 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,422,792 - 82,436,208 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,500,913 - 82,514,376 (-)NCBI
Celera177,048,385 - 77,061,819 (-)NCBICelera
Cytogenetic Map1q21NCBI
SHKBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22046,836,135 - 46,850,721 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11948,707,060 - 48,721,631 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01937,621,867 - 37,636,431 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,128,717 - 46,143,423 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,128,717 - 46,143,423 (+)Ensemblpanpan1.1panPan2
SHKBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,154,285 - 113,165,988 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,154,460 - 113,165,992 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,556,527 - 112,568,204 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,752,860 - 113,764,552 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,752,862 - 113,764,574 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,312,464 - 113,324,148 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,944,344 - 112,956,029 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,938,677 - 113,950,366 (-)NCBIUU_Cfam_GSD_1.0
Shkbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,475,905 - 14,487,839 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366612,903,938 - 2,915,910 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366612,903,986 - 2,915,908 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHKBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,813,168 - 48,826,457 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,813,163 - 48,826,461 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SHKBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,036,834 - 35,050,953 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607313,160,024 - 13,173,997 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shkbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624925529,182 - 542,436 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624925529,333 - 542,230 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000000649   ⟹   ENSCLAP00000000616
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955578716,632 - 730,593 (-)Ensembl
RefSeq Acc Id: XM_005414043   ⟹   XP_005414100
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955578716,818 - 730,593 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414100 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000616
  ENSCLAP00000000616.1
Reference Protein Sequences
RefSeq Acc Id: XP_005414100   ⟸   XM_005414043
- UniProtKB: A0A8C2UJG0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000000616   ⟸   ENSCLAT00000000649
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000496 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000649 ENTREZGENE
  ENSCLAT00000000649.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SHKBP1/KCTD3 UniProtKB/TrEMBL
  SHKBP1_KCTD3_BTB_POZ UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Shkbp1 ENTREZGENE
PANTHER SETA BINDING PROTEIN 1 UniProtKB/TrEMBL
  SH3KBP1-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt A0A8C2UJG0 ENTREZGENE, UniProtKB/TrEMBL