Nol10 (nucleolar protein 10) - Rat Genome Database

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Gene: Nol10 (nucleolar protein 10) Chinchilla lanigera
Analyze
Symbol: Nol10
Name: nucleolar protein 10
RGD ID: 8872636
Description: ASSOCIATED WITH megacolon (ortholog); FOUND IN nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,655,212 - 5,700,901 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,655,378 - 5,701,017 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
megacolon  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nol10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,655,212 - 5,700,901 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,655,378 - 5,701,017 (-)NCBIChiLan1.0ChiLan1.0
NOL10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38210,570,754 - 10,689,975 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl210,562,347 - 10,689,987 (-)EnsemblGRCh38hg38GRCh38
GRCh37210,710,880 - 10,830,101 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36210,628,345 - 10,747,549 (-)NCBINCBI36Build 36hg18NCBI36
Celera210,625,984 - 10,745,255 (-)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef210,563,758 - 10,682,602 (-)NCBIHuRef
CHM1_1210,639,886 - 10,759,678 (-)NCBICHM1_1
T2T-CHM13v2.0210,600,793 - 10,720,003 (-)NCBIT2T-CHM13v2.0
Nol10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,398,423 - 17,480,101 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,398,459 - 17,480,096 (+)EnsemblGRCm39 Ensembl
GRCm381217,348,421 - 17,430,095 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,348,458 - 17,430,095 (+)EnsemblGRCm38mm10GRCm38
MGSCv371217,355,299 - 17,436,901 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361217,373,973 - 17,455,575 (+)NCBIMGSCv36mm8
Celera1217,669,996 - 17,752,099 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.07NCBI
Nol10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,861,773 - 45,954,067 (+)NCBIGRCr8
mRatBN7.2640,144,217 - 40,225,353 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl640,144,235 - 40,225,353 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx640,471,633 - 40,552,688 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0640,786,329 - 40,867,385 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0640,219,585 - 40,300,635 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0642,656,661 - 42,745,099 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,656,616 - 42,745,098 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,376,044 - 52,460,901 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4641,121,421 - 41,202,780 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1641,124,373 - 41,205,732 (+)NCBI
Celera639,444,624 - 39,525,709 (+)NCBICelera
Cytogenetic Map6q16NCBI
NOL10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,826,925 - 115,943,615 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,830,963 - 115,947,586 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A10,572,008 - 10,688,682 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A10,725,617 - 10,842,189 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A10,725,617 - 10,842,190 (-)Ensemblpanpan1.1panPan2
NOL10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,490,387 - 7,574,342 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,490,916 - 7,574,331 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha177,415,812 - 7,499,502 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0177,588,111 - 7,675,719 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl177,588,116 - 7,675,720 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,478,378 - 7,562,274 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,481,059 - 7,564,723 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,495,158 - 7,578,634 (-)NCBIUU_Cfam_GSD_1.0
Nol10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629251,948,295 - 52,031,772 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365326,706,592 - 6,786,703 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365326,705,878 - 6,786,810 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOL10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3125,861,432 - 125,956,887 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13125,861,422 - 125,956,626 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,629,274 - 134,723,599 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOL10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11496,929,399 - 97,045,962 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1496,929,085 - 97,047,597 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604515,250,130 - 15,365,623 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nol10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248654,747,787 - 4,798,734 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248654,747,674 - 4,800,822 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000003185   ⟹   ENSCLAP00000003121
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554875,655,212 - 5,700,901 (-)Ensembl
RefSeq Acc Id: XM_005404412   ⟹   XP_005404469
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554875,655,378 - 5,701,017 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013504380   ⟹   XP_013359834
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554875,655,378 - 5,700,055 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013504381   ⟹   XP_013359835
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554875,655,378 - 5,700,055 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404469 (Get FASTA)   NCBI Sequence Viewer  
  XP_013359834 (Get FASTA)   NCBI Sequence Viewer  
  XP_013359835 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003121
  ENSCLAP00000003121.1
RefSeq Acc Id: XP_005404469   ⟸   XM_005404412
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UTZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359834   ⟸   XM_013504380
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013359835   ⟸   XM_013504381
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000003121   ⟸   ENSCLAT00000003185
Protein Domains
NUC153


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002234 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003185 ENTREZGENE
  ENSCLAT00000003185.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro NOL10/Enp2 UniProtKB/TrEMBL
  NUC153 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Nol10 ENTREZGENE
PANTHER NUCLEOLAR PROTEIN 10 UniProtKB/TrEMBL
  PTHR14927 UniProtKB/TrEMBL
Pfam NUC153 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C2UTZ1 ENTREZGENE, UniProtKB/TrEMBL