Klhl40 (kelch like family member 40) - Rat Genome Database

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Gene: Klhl40 (kelch like family member 40) Chinchilla lanigera
Analyze
Symbol: Klhl40
Name: kelch like family member 40
RGD ID: 8866063
Description: INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); negative regulation of protein ubiquitination (ortholog); positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); genetic disease (ortholog); nemaline myopathy 8 (ortholog); FOUND IN A band (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kelch-like family member 40; kelch-like protein 40
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,117,898 - 28,122,270 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,117,553 - 28,122,391 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Klhl40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,117,898 - 28,122,270 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,117,553 - 28,122,391 (-)NCBIChiLan1.0ChiLan1.0
KLHL40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38342,685,537 - 42,692,544 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl342,685,537 - 42,692,544 (+)EnsemblGRCh38hg38GRCh38
GRCh37342,727,029 - 42,734,036 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,702,015 - 42,708,942 (+)NCBINCBI36Build 36hg18NCBI36
Build 34342,702,014 - 42,708,942NCBI
Celera342,667,406 - 42,674,333 (+)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef342,772,653 - 42,779,580 (+)NCBIHuRef
CHM1_1342,678,186 - 42,685,113 (+)NCBICHM1_1
T2T-CHM13v2.0342,703,548 - 42,710,555 (+)NCBIT2T-CHM13v2.0
Klhl40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,606,673 - 121,612,885 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9121,606,673 - 121,612,884 (+)EnsemblGRCm39 Ensembl
GRCm389121,777,499 - 121,791,200 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,777,607 - 121,783,818 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,686,725 - 121,692,937 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369121,623,722 - 121,632,518 (+)NCBIMGSCv36mm8
Celera9122,250,832 - 122,257,196 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.61NCBI
Klhl40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88130,318,793 - 130,324,309 (+)NCBIGRCr8
mRatBN7.28121,441,285 - 121,446,801 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8121,441,287 - 121,446,800 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8127,040,450 - 127,045,966 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08125,239,517 - 125,245,033 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08123,068,719 - 123,074,236 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08130,416,265 - 130,421,871 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,416,355 - 130,421,871 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,596,172 - 129,601,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,153,472 - 127,159,307 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18127,173,602 - 127,178,958 (-)NCBI
Celera8120,575,465 - 120,580,981 (+)NCBICelera
Cytogenetic Map8q32NCBI
KLHL40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2242,648,634 - 42,657,268 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1342,653,395 - 42,662,029 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0342,592,977 - 42,600,100 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1343,657,128 - 43,664,055 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl343,657,128 - 43,664,055 (+)Ensemblpanpan1.1panPan2
KLHL40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12311,812,268 - 11,820,426 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2311,813,550 - 11,820,420 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2311,788,054 - 11,794,913 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02312,103,227 - 12,110,087 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2312,103,414 - 12,110,084 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12311,905,185 - 11,912,008 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,047,337 - 12,054,167 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,051,398 - 12,058,303 (+)NCBIUU_Cfam_GSD_1.0
Klhl40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118200,063,283 - 200,072,287 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366952,414,573 - 2,424,702 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366952,417,938 - 2,424,622 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLHL40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,202,677 - 26,211,522 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,202,607 - 26,211,528 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,863,095 - 28,876,907 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KLHL40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,141,759 - 4,149,158 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl224,142,192 - 4,148,710 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041163,051,860 - 163,059,265 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klhl40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473077,007,063 - 77,011,413 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473077,004,787 - 77,012,643 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000024128   ⟹   ENSCLAP00000023902
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542028,117,898 - 28,122,270 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000024129   ⟹   ENSCLAP00000023903
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542028,117,898 - 28,122,270 (-)Ensembl
RefSeq Acc Id: XM_005383531   ⟹   XP_005383588
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542028,117,553 - 28,122,391 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005383588 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023902
  ENSCLAP00000023902.1
  ENSCLAP00000023903.1
RefSeq Acc Id: XP_005383588   ⟸   XM_005383531
- UniProtKB: A0A8C2W9Q3 (UniProtKB/TrEMBL),   A0A8C2W3Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000023903   ⟸   ENSCLAT00000024129
RefSeq Acc Id: ENSCLAP00000023902   ⟸   ENSCLAT00000024128
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016403 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024128 ENTREZGENE
  ENSCLAT00000024128.1 UniProtKB/TrEMBL
  ENSCLAT00000024129.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB-kelch_protein UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene Klhl40 ENTREZGENE
PANTHER LD33804P UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
PIRSF Kelch-like_protein_gigaxonin UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt A0A8C2W3Y6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W9Q3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Klhl40  kelch like family member 40    kelch-like family member 40  Symbol and/or name change 5135510 APPROVED