CUNH8orf58 (chromosome unknown C8orf58 homolog)

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Gene: CUNH8orf58 (chromosome unknown C8orf58 homolog) Chinchilla lanigera

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Symbol:

CUNH8orf58 (Ensembl: C8orf58)

Name:

chromosome unknown C8orf58 homolog

RGD ID:

8864939

Description:

ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chromosome unknown open reading frame, human C8orf58; LOC102012917; uncharacterized protein C8orf58 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	46,023,610 - 46,026,997 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	46,024,484 - 46,027,834 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Conotruncal Cardiac Defects (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

CUNH8orf58
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	46,023,610 - 46,026,997 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	46,024,484 - 46,027,834 (+)	NCBI	ChiLan1.0	ChiLan1.0

C8orf58
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	22,599,599 - 22,604,142 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	22,599,599 - 22,604,150 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	22,457,112 - 22,461,655 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	22,513,067 - 22,517,608 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	21,418,974 - 21,423,515 (+)	NCBI		Celera
Cytogenetic Map	8	p21.3	NCBI
HuRef	8	20,999,962 - 21,004,511 (+)	NCBI		HuRef
CHM1_1	8	22,659,306 - 22,663,855 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	22,873,482 - 22,878,025 (+)	NCBI		T2T-CHM13v2.0

9930012K11Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	70,391,854 - 70,396,951 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	70,391,854 - 70,396,951 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	70,154,405 - 70,159,502 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	70,154,405 - 70,159,502 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	70,554,212 - 70,559,309 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	68,889,485 - 68,901,790 (-)	NCBI		MGSCv36	mm8
Celera	14	67,695,147 - 67,700,244 (-)	NCBI		Celera
Cytogenetic Map	14	D2	NCBI
cM Map	14	36.25	NCBI

C15h8orf58
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	51,638,336 - 51,645,141 (-)	NCBI		GRCr8
mRatBN7.2	15	45,228,615 - 45,235,274 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	45,228,615 - 45,233,254 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	49,346,468 - 49,351,106 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	50,457,962 - 50,462,600 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	47,317,278 - 47,321,916 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	51,834,703 - 51,841,412 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	51,834,703 - 51,839,341 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	55,560,857 - 55,568,826 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	50,555,250 - 50,559,887 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	50,571,145 - 50,575,659 (-)	NCBI
Celera	15	44,908,257 - 44,912,742 (-)	NCBI		Celera
Cytogenetic Map	15	p11	NCBI

C7H8orf58
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	41,106,581 - 41,111,140 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	16,831,594 - 16,836,326 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	21,849,622 - 21,854,234 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	18,783,605 - 18,792,394 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	18,783,612 - 18,792,386 (+)	Ensembl	panpan1.1		panPan2

C25H8orf58
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	34,674,918 - 34,679,389 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	34,674,756 - 34,679,454 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	35,264,666 - 35,269,097 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	34,884,475 - 34,888,907 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	34,885,313 - 34,888,858 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	34,830,924 - 34,835,354 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	34,685,001 - 34,689,431 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	34,840,519 - 34,844,950 (-)	NCBI		UU_Cfam_GSD_1.0

CUNH8orf58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	12,229,651 - 12,235,108 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936555	6,336,522 - 6,340,032 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936555	6,336,092 - 6,340,862 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CUNH8orf58
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	20,680,207 - 20,684,351 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	20,680,342 - 20,684,332 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	21,542,298 - 21,546,896 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH8orf58
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	18,101,772 - 18,105,212 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	18,099,118 - 18,106,056 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005373682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01002849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCB01089866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01177202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000020905 ⟹ ENSCLAP00000020707

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955403	46,023,610 - 46,026,997 (+)	Ensembl

RefSeq Acc Id:

XM_005373682 ⟹ XP_005373739

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	46,024,484 - 46,027,834 (+)	NCBI

Sequence:

show sequence

GCGCGCGCGGGCGGGGAGCGGCCATGCTGGGCCGGCGCCGCGTCTTCGCCGTGGAGCCGCTCGG
CGGCCGGGATGGGGCTGGCAAGGCCCTGGCACATGGCTGCATTGTGCCTGGGGTCACCAGCACC
TATAGACGGATCCCAGACTTGGCTCCTGGATGCACGCCGGGCCTCCGGGAAGGAGAGGGCGAGC
CACAGTGGCTGGAGGGGCAGGTGCCTCCTCCCAAACTGGCCTCGTGGGACTCAGGGGTGGAGAC
GGTGGCAGGGCACAGCCCCCTGGCCACCTTCCCAGGCCTCTCTCAGGACTCTCTGAACATGAAG
CCCCTGGGGAGCCCTGAGCCCTCAGCCCTTGCTGCCCTGGAGCCCCCTGGCCAGTTGGACCGGC
TGCTGGCCAGCCGCAAGTTGGAGCAGGTTCTGGAGCGGTCCCAGGTGCGTCCCCGCTTGTCCGC
ACAGCACCATGTCCCACCACCGGCACCGCGGAGCAGGCCTGGGTGTGTTACGCCCCTGCTGGGA
GCCGGACAGGAGCCCGCCGAGGTGCAGGCCGAGCCAGAGGTGGACCTGGAAGAGGCAGAGGTGG
TGGCAGCCGTGGTGCCCAGAGGCTGGGCCTGCCTCCCAGGGCAAGGGCTTCGCTACCTGGAGCA
CCTGTGCCTGGTGCTGGAGCAGATGGCAAGACTGCAGCAGCTCTACCTGCAGCTGCAGAGCCAG
AGGCCCCCAGAGGATCTGGAAGAGGAGCTGGCCCTGGCTCCCTTACCTTCCCTTTCATCTGCCC
CAGGCAATGGGGTGCACGGGTCAGAGGAGCTGCTAAGCCCAACAAATGAGACAGGGACAGAGGC
AGCCTCACGCTCGGAGGTTGGGATGCTCAGTTCCAACCCTCCCCAACTGCCAGAGATCCCGGGG
GAACCAACTGACAGCTTTCCGCCCTCCCTGGGACACAAGAGCCCCTCCCACTGGGACAAGATCA
AGGTGCTGCTCAACCGGATCCGCTGGAGGAGCCCCGGACACCCTGAGCACTCTGTCCCTCCTGA
TGGTTGTGGCCCCAGGACTGAGTCCAGGGACTTCTCTGAAAGCCCTCAGTGCCACCCCCAACGG
AAGACTTTTATGCCGTCATTAGTGGTTAAGAAGCAACGGGCAAAAAACTTTTCAGTATGTTGAG
GCCTCGATGTAGCTGGTAGCCCTGGCAAAGGGGATTTGCCTCGGAGTCTTTCTTGTCCTTTCCC
CTGTTGCTGCTTTTCTGCACTGCCAGGAAAAGCTACTGATGCATGCCCTTCTCCAAGGCGAGGA
CTGAGTCTTTCTCCACTGAGCACTGTGGCAGAGGAGCCCTAATTCCTGGAAAGGGCCCAGGGTG
TGGCAACTTCAGAGCTCCGCTTCCTTGCTAGAAATCCCTGGGCCCAGACAATGTGAACTAACTT
ATTTATCAGGCCTCCGTGTATTTGGCAGGACGATGTGTCTGGGCTCAGCATGTTGCAGATGCGT
GTTCATGTATGATGATACATGTGTGTGGGACTGTCGGGATTGGTAACTGGCTGGATCCAACTAT
GCCCGCTGGAATCTTGCATCCAAGGGGCTGGGTAACTATGGAAGGGTGGAGCTAGGCTTCAGTC
CACACAGGGGTTACTGATCTGGATTCCAGCTTTCCTCCTCGTGACTGAATTGGCAGCTCCAGCA
CAAAGAAGACTGCTGTCTTGGCTACCTCTGTATTAGTCGTGCACCTGGAGCTCCTGTGGACTGT
GTGAAGAGTGCGCAGGCATGGGGGAGGATCAGGGACAGTGTGGGGCACAGCGGAATAGCCTTCA
GGGCTGGTTCTCAGCTGCTGTGCTCCATACTAGCTTGTACGTGTCAGAGCTGAAACCTGAAGCT
AATGCTACATAGCTGTTAGACTTGACAAAGTCTCAACTTTTGAGCCACAGCTTCCCATTTGGGA
TAATGATGCCTGCCTTACCTACCTCACAAGCTTGTTATGAGGATAAAATGAGATGAAACTGTCT
CCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005373739	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000020707
	ENSCLAP00000020707.1

RefSeq Acc Id:

XP_005373739 ⟸ XM_005373682

- UniProtKB:

A0A8C2VUF2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLGRRRVFAVEPLGGRDGAGKALAHGCIVPGVTSTYRRIPDLAPGCTPGLREGEGEPQWLEGQV
PPPKLASWDSGVETVAGHSPLATFPGLSQDSLNMKPLGSPEPSALAALEPPGQLDRLLASRKLE
QVLERSQVRPRLSAQHHVPPPAPRSRPGCVTPLLGAGQEPAEVQAEPEVDLEEAEVVAAVVPRG
WACLPGQGLRYLEHLCLVLEQMARLQQLYLQLQSQRPPEDLEEELALAPLPSLSSAPGNGVHGS
EELLSPTNETGTEAASRSEVGMLSSNPPQLPEIPGEPTDSFPPSLGHKSPSHWDKIKVLLNRIR
WRSPGHPEHSVPPDGCGPRTESRDFSESPQCHPQRKTFMPSLVVKKQRAKNFSVC

hide sequence

Ensembl Acc Id:

ENSCLAP00000020707 ⟸ ENSCLAT00000020905

Protein Domains

DUF4657

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000014186	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000020905	ENTREZGENE
	ENSCLAT00000020905.1	UniProtKB/TrEMBL
InterPro	DUF4657	UniProtKB/TrEMBL
NCBI Gene	LOC102012917	ENTREZGENE
PANTHER	SIMILAR TO 9930012K11RIK PROTEIN	UniProtKB/TrEMBL
	SIMILAR TO 9930012K11RIK PROTEIN	UniProtKB/TrEMBL
Pfam	DUF4657	UniProtKB/TrEMBL
UniProt	A0A8C2VUF2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	CUNH8orf58	chromosome unknown C8orf58 homolog	LOC102012917	chromosome unknown open reading frame, human C8orf58	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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