Symbol:
Trim55
Name:
tripartite motif containing 55
RGD ID:
8843304
Description:
ENCODES a protein that exhibits identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN diapedesis (ortholog); leukocyte migration involved in inflammatory response (ortholog); macrophage migration (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
tripartite motif-containing protein 55
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955444 12,992,362 - 13,034,621 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955444 12,992,362 - 13,034,621 (-) NCBI ChiLan1.0 ChiLan1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Trim55 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955444 12,992,362 - 13,034,621 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955444 12,992,362 - 13,034,621 (-) NCBI ChiLan1.0 ChiLan1.0
TRIM55 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 8 66,113,351 - 66,175,485 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 8 66,126,896 - 66,175,485 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 8 67,039,364 - 67,087,720 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 8 67,201,832 - 67,250,274 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 8 63,030,998 - 63,079,433 (+) NCBI Celera Cytogenetic Map 8 q13.1 NCBI HuRef 8 62,529,431 - 62,577,875 (+) NCBI HuRef CHM1_1 8 67,093,935 - 67,142,373 (+) NCBI CHM1_1 T2T-CHM13v2.0 8 66,538,238 - 66,601,172 (+) NCBI T2T-CHM13v2.0
Trim55 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 3 19,698,591 - 19,746,748 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 3 19,698,611 - 19,746,756 (+) Ensembl GRCm39 Ensembl GRCm38 3 19,644,344 - 19,692,584 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 3 19,644,474 - 19,692,421 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 3 19,544,460 - 19,591,599 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 3 19,836,611 - 19,883,750 (+) NCBI MGSCv36 mm8 Celera 3 19,637,248 - 19,684,700 (+) NCBI Celera Cytogenetic Map 3 A2 NCBI cM Map 3 5.65 NCBI
Trim55 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 104,016,361 - 104,058,302 (+) NCBI GRCr8 mRatBN7.2 2 102,100,229 - 102,142,173 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 102,088,443 - 102,142,168 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 2 108,624,508 - 108,673,252 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 106,745,640 - 106,794,384 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 101,713,099 - 101,763,541 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 104,416,972 - 104,459,117 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 104,416,972 - 104,459,107 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 124,140,032 - 124,182,037 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 104,721,413 - 104,763,136 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 104,666,374 - 104,708,096 (+) NCBI Celera 2 97,493,957 - 97,535,909 (+) NCBI Celera Cytogenetic Map 2 q24 NCBI
TRIM55 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 7 81,840,314 - 81,907,943 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 8 57,484,344 - 57,548,891 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 8 62,651,139 - 62,713,882 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 8 64,319,423 - 64,381,352 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 8 64,319,423 - 64,381,352 (+) Ensembl panpan1.1 panPan2
TRIM55 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 29 15,786,423 - 15,831,059 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 29 15,786,433 - 15,830,402 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 29 16,101,222 - 16,145,848 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 29 15,865,064 - 15,909,688 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 29 15,865,071 - 15,910,988 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 29 15,894,673 - 15,939,274 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 29 15,997,002 - 16,041,595 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 29 16,252,730 - 16,297,343 (+) NCBI UU_Cfam_GSD_1.0
Trim55 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405303 66,966,659 - 67,023,035 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936496 7,762,531 - 7,816,359 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936496 7,762,471 - 7,816,359 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
TRIM55 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 4 68,487,120 - 68,530,889 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 4 68,487,249 - 68,530,927 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 4 74,655,441 - 74,698,465 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
TRIM55 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 8 61,996,908 - 62,052,053 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 8 62,002,042 - 62,051,150 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666039 79,460,973 - 79,509,929 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Trim55
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCLAT00000002428 ⟹ ENSCLAP00000002377
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955444 12,992,362 - 13,034,621 (-) Ensembl
RefSeq Acc Id:
XM_005392155 ⟹ XP_005392212
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955444 12,992,362 - 13,034,621 (-) NCBI
Sequence:
ATGAGTGCATCTCTGAATTACAAGTCTTTTTCCAAAGAGCAGCAAACCATGGATAACTTGGAGAAACAACTTATCTGTCCCATCTGCCTAGAGATGTTCACGAAACCAGTGGTCATTCTCCCCTGTCA
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RefSeq Acc Id:
XM_005392156 ⟹ XP_005392213
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955444 12,993,261 - 13,034,621 (-) NCBI
Sequence:
ATGAGTGCATCTCTGAATTACAAGTCTTTTTCCAAAGAGCAGCAAACCATGGATAACTTGGAGA
hide sequence
RefSeq Acc Id:
XM_005392157 ⟹ XP_005392214
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955444 12,993,271 - 13,034,621 (-) NCBI
Sequence:
ATGAGTGCATCTCTGAATTACAAGTCTTTTTCCAAAGAGCAGCAAACCATGGATAACTTGGAGAAACAACTTATCTGTCCCATCTGCCTAGAGATGTTCACGAAACCAGTGGTCATTCTCCCCTGTCA
hide sequence
RefSeq Acc Id:
XM_005392158 ⟹ XP_005392215
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955444 12,993,217 - 13,034,621 (-) NCBI
Sequence:
ATGAGTGCATCTCTGAATTACAAGTCTTTTTCCAAAGAGCAGCAAACCATGGATAACTTGGAGA
hide sequence
RefSeq Acc Id:
XP_005392215 ⟸ XM_005392158
- Peptide Label:
isoform X4
- Sequence:
MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTVASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESIRPEKKSDQPMCEEHE
hide sequence
RefSeq Acc Id:
XP_005392212 ⟸ XM_005392155
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C2ULK8 (UniProtKB/TrEMBL)
- Sequence:
MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPT
hide sequence
RefSeq Acc Id:
XP_005392213 ⟸ XM_005392156
- Peptide Label:
isoform X2
- Sequence:
MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTVASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESIRPEKKSDQPMCEEHE
hide sequence
RefSeq Acc Id:
XP_005392214 ⟸ XM_005392157
- Peptide Label:
isoform X3
- Sequence:
MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPT
hide sequence
Ensembl Acc Id:
ENSCLAP00000002377 ⟸ ENSCLAT00000002428
