Uspl1 (ubiquitin specific peptidase like 1)

Gene: Uspl1 (ubiquitin specific peptidase like 1) Chinchilla lanigera

Analyze

Symbol:

Uspl1

Name:

ubiquitin specific peptidase like 1

RGD ID:

8826804

Description:

ENCODES a protein that exhibits deSUMOylase activity (ortholog); SUMO binding (ortholog); ubiquitin binding (ortholog); INVOLVED IN blastocyst formation (ortholog); Cajal body organization (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN Cajal body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SUMO-specific isopeptidase USPL1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	15,173,625 - 15,209,473 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	15,173,448 - 15,212,443 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst formation (ISO)

Cajal body organization (ISO)

cell population proliferation (ISO)

protein desumoylation (ISO)

snRNA transcription (ISO)

Cellular Component

Cajal body (ISO)

Molecular Function

deSUMOylase activity (ISO)

protein binding (ISO)

SUMO binding (ISO)

ubiquitin binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Uspl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	15,173,625 - 15,209,473 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	15,173,448 - 15,212,443 (-)	NCBI	ChiLan1.0	ChiLan1.0

USPL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	30,617,920 - 30,660,766 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	30,617,693 - 30,660,770 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	31,192,057 - 31,234,903 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	30,089,920 - 30,131,686 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	30,089,919 - 30,131,686	NCBI
Celera	13	12,260,821 - 12,302,674 (+)	NCBI		Celera
Cytogenetic Map	13	q12.3	NCBI
HuRef	13	12,009,328 - 12,051,666 (+)	NCBI		HuRef
CHM1_1	13	31,159,523 - 31,201,291 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	29,839,977 - 29,882,805 (+)	NCBI		T2T-CHM13v2.0

Uspl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	149,121,338 - 149,152,246 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	149,121,160 - 149,152,244 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	149,184,560 - 149,215,434 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	149,184,350 - 149,215,434 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	149,996,136 - 150,027,010 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	149,495,067 - 149,525,783 (+)	NCBI		MGSCv36	mm8
Celera	5	147,199,738 - 147,230,612 (+)	NCBI		Celera
Cytogenetic Map	5	G3	NCBI
cM Map	5	89.18	NCBI

Uspl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	10,859,764 - 10,886,761 (-)	NCBI		GRCr8
mRatBN7.2	12	5,823,460 - 5,850,470 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	5,823,359 - 5,850,366 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	6,495,299 - 6,521,899 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	7,118,425 - 7,145,025 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	6,146,430 - 6,173,029 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	6,930,018 - 6,957,027 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	6,929,978 - 6,956,984 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	9,026,185 - 9,053,011 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	6,318,581 - 6,345,858 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	6,337,758 - 6,345,845 (-)	NCBI
Celera	12	7,581,451 - 7,608,343 (-)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

USPL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	30,201,627 - 30,243,495 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	21,308,339 - 21,350,331 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	11,895,108 - 11,937,000 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	30,329,995 - 30,371,870 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	30,329,995 - 30,371,870 (+)	Ensembl	panpan1.1		panPan2

USPL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	9,397,575 - 9,430,058 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	9,397,763 - 9,427,431 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	9,442,413 - 9,475,896 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	9,509,054 - 9,542,555 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	9,509,061 - 9,542,397 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	9,403,303 - 9,436,787 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	9,411,676 - 9,444,966 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	9,453,709 - 9,487,196 (-)	NCBI		UU_Cfam_GSD_1.0

Uspl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	170,542,355 - 170,581,864 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	25,374,332 - 25,410,343 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	25,370,381 - 25,409,800 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USPL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	7,321,202 - 7,361,571 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	7,321,187 - 7,361,280 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	6,990,288 - 7,005,953 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USPL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	9,502,322 - 9,546,633 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	9,504,682 - 9,546,319 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	34,818,942 - 34,863,740 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Uspl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	7,658,267 - 7,696,393 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	7,662,591 - 7,698,811 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005387742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013515876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013515877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01030347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01030348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01036768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000004489 ⟹ ENSCLAP00000004406

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955431	15,173,625 - 15,209,473 (-)	Ensembl

RefSeq Acc Id:

XM_005387742 ⟹ XP_005387799

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	15,173,448 - 15,212,443 (-)	NCBI

Sequence:

show sequence

CAACCGGAAGTTGCTTTCCTGGCCGAGCGGCGGTGAGGGAGGAGTAGTGCGCGCGGAACGTGGG
TTGAACGTTGCGATTTGGTGTGGCGCGCAAGCTGGAACAGGAGTTCGGACCGGCCCGGTACGAA
GAAGGGGAGTGCTCGGGGCAGGGTTCATTGAAAAATCCTTAGTGATATTGACATGTTTCAAGTG
ACATAAATTAGCCAAAGACTCGGAATGATGGATTCTTCGAAGATTGGAAATGGTTTGCCAGTGA
TTGGACAAGGGCCTGATATAGGGATATCTTCACTCCCCATGGTGGGGTATTTGGGAAAAAATTA
TGATTCAGCTAAAGTTACATCAGATGGATATTGTCCTGCTTGTAGAGAGAAGGGAAAGTTAAAA
GCATTAAAGACTTACCGAATTAGTTTTCAAGAATCTATCTTTTTGTGTGAGGATCTGCAGTGCA
TCTATCCTTTGGGCTCTAAGTCACTTAATAATTTAATTTCCCCTGATTCCGAAGACTGTCACAC
TCCAGATAAGCCTCAAAAAAGAAAGATCTTGGAAACTAGCTGTAAAGATTTATCTGTTTTATCA
AATTCTAAAAAGACTAGAACTCATATTTTTACTGGTGATAAACAAATTTTAAATAGAGAGCATA
ATGGAGAAGTATGTACTGAACTCTCATCAGATTCATTGCCTGGTAGCCTTCAACGCGATTCAGT
TGGGACAGCTGATGCCTTGGGACAGAATGAGACTTCGGCAACTGATAATGTTGATATGGCTACT
GAAGAGCCCGCCACAGTTGATGTTTCTGGAACTGGGGAAATTTCTTCTCGAAGTGAAGGATGTT
CATCTGAATGTGAAACGCCACTGGAGAGAACATACTCACTGTGCCAGACTTCATGTGTCCAGTG
GAGAAATGCTAATGCGCTGTGCTGGTTAGATTCTATCCTGTCAGTTTTGGTGCACTTGGAAGCC
TTGAAGAACATTGTGACTGAATTGTGTTCTAAGGACTCTGTATTTTGGCGGTTGTTTGAGAAAT
ATAATCAAGCAAATAAGCTCCTGTACACCAGTCAGTTGGATGAAGTTAAAGATGGAGATTGTAA
AAAACTTACTTCAGAAATTTTTGCAGAGATAGAGACCTGTCTGAATGAAGTCAGAGATGAAATT
TTTACTAAACTTCAGCCCCAGCTTAGATGCACATTAGGTGAGAGAGAAAGCCCTGTGTTTGCAT
TTCCTCTGCTCTTAAGAATAGAAGACCCCATTGGAAAGCTCTTCACGTATTCTTTTTCCTGGAA
CTTTGAATGTTCACAGTGTGGGCACCGATACCAAAACAGATGTGTGAAGAATCTCGTCACCTTT
ACAAATGTCATCCCCGGGTGGCACCCGCTTAATGCTGCCCATTTCGGCCCGTGCAACAGTTGCA
ACAGTAGATCACAAATAAGAAAGATGGTGTTGGAAAAAGTGTCTCCCATATTCATGCTGCACTT
CGTAGAAGGGTTACCGCGGAATGACTTGCAGCACTACTCGTTTCATTTTGGAGGCTGTCTTTAT
CAAGTAACAGCCATAATTCAGTACCAAGCCAATGACCATTTCATAACGTGGATTTTACATGCAG
ATGGTAGTTGGCTGGAATGTGACGACCTAAAGGGTTTGTGTGCGCAAAGGCATGAGAAATTTGC
AGTTCCCGCTTCAGAGATACATATTGTTATTTGGGAAAGAAAAACATCCCAAGCAACAGATGAA
GAAGCTGCCTGCCCTCCACTTAAGAAGACTAATGATCAGCATGCTTCCGGGGAAGAGAGACCAG
CAACTCCAGCATCGCGTCCTCCGGCCCGGGCTGCCTCAGCAGAGACGTCTTCACTCACTCTCCC
CACGTCTGCGGCCCCTGCTCCTCATAGCCTCCCACAGGACAGAGCTGTGGCTCAGGAAGATCAC
AGACATTCAGATCCAAGAGTTTTGGCTGACAGTAATGTTTTACCTCTGACACTTGAAGGCTCTG
TCTGGAAGACTGCCTCAGTTTTTCAGGTTACCACTGAAGCATTCCTACCCCAAAACACACCTGT
GGCAGAAAATACAGGGCTTATCAAAACAAACACTTTGCAATTGCAGGAATCACCAGTGGGTTCT
TCAGTGTCAGCTCCATGTAAAGAAAAACTTACCCAAGCCCAGCTTGTGGGCTTAAGTTTCCCAT
TGCAAGTTGTAAACACAAACACACAGTTGGAACTGCTGAATACAGAACATGCTGCAATTACTCA
GCCTGTGAATAACGCGCAGGCTGCTGGTCTTGTCCAGGGAGTAAAGTCAGGAGAAGTTGCAAAG
GACCCTGAGTTAAAACAGACCCTTTCATGGAAAACTGAGAAATTAAAACCAGAAACACCTTCTG
TATCTCAGGTATCGAATTTGAAGAAAAAAGCCACAGCAGATCCACAGTCTGTGACCGCCACATC
ATCACAGAATCAGCCCCCAAAAGAAAATCAGAAGAAACCATTTGTGGGCAGTTGGGTTAAAGGC
CTGCTAAGCAGGGGTGCTTCTTTTATGCCCTCCTGTGTTTCGGCTAATAATAGAAACACTATAA
CTGATTTGCAGCCTTCAGTTAAAGGGGCGCGTAATTTTGGTGGCTTTAAAACTAAAGGTACAAA
GCAAAAGGCCAGCCACATATCAAAGAAAGCCCGCAGATGTGCAGATCAGCTTCCTGCAGTCCGC
AACCCCCAACCAGATCTTCCACCTTCAGGGAATACAGCTGCTTCTCCACGCACAAGTGAGAATA
CCGCTTCAGAACCTCCGCTGGAGCTGGACAGGGCCTCACGTGGAGCTCACCTCAGTCACCCTTC
TCCCGGAAGGGAAAATGGGGTTTCTTCAGCAAACCATGGGGACTTGGCTGAAGGTCAGATTCAT
AAGCTTCGTCTGAAACTTCTTAGAAAACTAAAGGCAAAAAAGAAGAAGTTAGCTGCCCTCATGG
CTGCCTCTCAATGTGGAGGAATTCCTAGTGAAAATTTAGAAAATGGGCCCCAGTGTGAGTCTCC
AAATGATTGTGAATCAATAGAAGACTTGTTAAGTGAACTGCAGTATCATATTGATGTTGCAGAC
AGTAAATCTGGAGGTACCAGTGTTTCCTCATGCAATCAAATGCATGAAGAAATTTTAGCAGAAT
TATTGTCTCCAGGTATTTCAACGGAGCTCTCAGAAACTGGGGAGGCCGATGTGAAGTATTTGGA
AATGGGAGACAACCATGATCCAGCCCCAGAACCCACTGAATTAACTAATGATCCCCAGAACATA
CATCTGAAACAGGAGCACAATTATTGCAGCCCGACCAAGAGGAGCCAGTGTGACGCTCAGGCAG
TCCTACAGATAAACAATGCCTGCATCAGGACATTAAACTTGGAGAGCCCCGTGAAGACTGATAT
GTTTGATGAGTTTTTTCCTACTGCGTTAACTTTGGCAAATGACACCTTCGACTTAACTCATTTT
GATGAGTATCTGTTTGAGAATTATTGAATATTTGTAAACTCTTTAATATTTATTATTGCTGTTA
GAAAAACTTAACTGCGTTTTCAGGTATACACTGTCCTTGTAATAATCATGAATGAAATTTAAGC
TGCTGAAAGTTTTACCTTTGGTCCTGCCCCTGAAGCATGTAACCTGTTATACAAATTAAAATCA
TTAGGAATTGTT

hide sequence

RefSeq Acc Id:

XM_013515876 ⟹ XP_013371330

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	15,173,448 - 15,212,440 (-)	NCBI

Sequence:

show sequence

CCGGAAGTTGCTTTCCTGGCCGAGCGGCGGTGAGGGAGGAGTAGTGCGCGCGGAACGTGGGTTG
AACGTTGCGATTTGGTGTGGCGCGCAAGCTGGAACAGGAGTTCGGACCGGCCCGGTACGAAGAA
GGGGAGTGCTCGGGGCAGAATTATGATTCAGCTAAAGTTACATCAGATGGATATTGTCCTGCTT
GTAGAGAGAAGGGAAAGTTAAAAGCATTAAAGACTTACCGAATTAGTTTTCAAGAATCTATCTT
TTTGTGTGAGGATCTGCAGGAATAGTGTTCTTAATGAAATAGATGGGTTTACAGCAGGGATCAG
CAAACTTTGTATGATGCAAAGCCTTCAACGCGATTCAGTTGGGACAGCTGATGCCTTGGGACAG
AATGAGACTTCGGCAACTGATAATGTTGATATGGCTACTGAAGAGCCCGCCACAGTTGATGTTT
CTGGAACTGGGGAAATTTCTTCTCGAAGTGAAGGATGTTCATCTGAATGTGAAACGCCACTGGA
GAGAACATACTCACTGTGCCAGACTTCATGTGTCCAGTGGAGAAATGCTAATGCGCTGTGCTGG
TTAGATTCTATCCTGTCAGTTTTGGTGCACTTGGAAGCCTTGAAGAACATTGTGACTGAATTGT
GTTCTAAGGACTCTGTATTTTGGCGGTTGTTTGAGAAATATAATCAAGCAAATAAGCTCCTGTA
CACCAGTCAGTTGGATGAAGTTAAAGATGGAGATTGTAAAAAACTTACTTCAGAAATTTTTGCA
GAGATAGAGACCTGTCTGAATGAAGTCAGAGATGAAATTTTTACTAAACTTCAGCCCCAGCTTA
GATGCACATTAGGTGAGAGAGAAAGCCCTGTGTTTGCATTTCCTCTGCTCTTAAGAATAGAAGA
CCCCATTGGAAAGCTCTTCACGTATTCTTTTTCCTGGAACTTTGAATGTTCACAGTGTGGGCAC
CGATACCAAAACAGATGTGTGAAGAATCTCGTCACCTTTACAAATGTCATCCCCGGGTGGCACC
CGCTTAATGCTGCCCATTTCGGCCCGTGCAACAGTTGCAACAGTAGATCACAAATAAGAAAGAT
GGTGTTGGAAAAAGTGTCTCCCATATTCATGCTGCACTTCGTAGAAGGGTTACCGCGGAATGAC
TTGCAGCACTACTCGTTTCATTTTGGAGGCTGTCTTTATCAAGTAACAGCCATAATTCAGTACC
AAGCCAATGACCATTTCATAACGTGGATTTTACATGCAGATGGTAGTTGGCTGGAATGTGACGA
CCTAAAGGGTTTGTGTGCGCAAAGGCATGAGAAATTTGCAGTTCCCGCTTCAGAGATACATATT
GTTATTTGGGAAAGAAAAACATCCCAAGCAACAGATGAAGAAGCTGCCTGCCCTCCACTTAAGA
AGACTAATGATCAGCATGCTTCCGGGGAAGAGAGACCAGCAACTCCAGCATCGCGTCCTCCGGC
CCGGGCTGCCTCAGCAGAGACGTCTTCACTCACTCTCCCCACGTCTGCGGCCCCTGCTCCTCAT
AGCCTCCCACAGGACAGAGCTGTGGCTCAGGAAGATCACAGACATTCAGATCCAAGAGTTTTGG
CTGACAGTAATGTTTTACCTCTGACACTTGAAGGCTCTGTCTGGAAGACTGCCTCAGTTTTTCA
GGTTACCACTGAAGCATTCCTACCCCAAAACACACCTGTGGCAGAAAATACAGGGCTTATCAAA
ACAAACACTTTGCAATTGCAGGAATCACCAGTGGGTTCTTCAGTGTCAGCTCCATGTAAAGAAA
AACTTACCCAAGCCCAGCTTGTGGGCTTAAGTTTCCCATTGCAAGTTGTAAACACAAACACACA
GTTGGAACTGCTGAATACAGAACATGCTGCAATTACTCAGCCTGTGAATAACGCGCAGGCTGCT
GGTCTTGTCCAGGGAGTAAAGTCAGGAGAAGTTGCAAAGGACCCTGAGTTAAAACAGACCCTTT
CATGGAAAACTGAGAAATTAAAACCAGAAACACCTTCTGTATCTCAGGTATCGAATTTGAAGAA
AAAAGCCACAGCAGATCCACAGTCTGTGACCGCCACATCATCACAGAATCAGCCCCCAAAAGAA
AATCAGAAGAAACCATTTGTGGGCAGTTGGGTTAAAGGCCTGCTAAGCAGGGGTGCTTCTTTTA
TGCCCTCCTGTGTTTCGGCTAATAATAGAAACACTATAACTGATTTGCAGCCTTCAGTTAAAGG
GGCGCGTAATTTTGGTGGCTTTAAAACTAAAGGTACAAAGCAAAAGGCCAGCCACATATCAAAG
AAAGCCCGCAGATGTGCAGATCAGCTTCCTGCAGTCCGCAACCCCCAACCAGATCTTCCACCTT
CAGGGAATACAGCTGCTTCTCCACGCACAAGTGAGAATACCGCTTCAGAACCTCCGCTGGAGCT
GGACAGGGCCTCACGTGGAGCTCACCTCAGTCACCCTTCTCCCGGAAGGGAAAATGGGGTTTCT
TCAGCAAACCATGGGGACTTGGCTGAAGGTCAGATTCATAAGCTTCGTCTGAAACTTCTTAGAA
AACTAAAGGCAAAAAAGAAGAAGTTAGCTGCCCTCATGGCTGCCTCTCAATGTGGAGGAATTCC
TAGTGAAAATTTAGAAAATGGGCCCCAGTGTGAGTCTCCAAATGATTGTGAATCAATAGAAGAC
TTGTTAAGTGAACTGCAGTATCATATTGATGTTGCAGACAGTAAATCTGGAGGTACCAGTGTTT
CCTCATGCAATCAAATGCATGAAGAAATTTTAGCAGAATTATTGTCTCCAGGTATTTCAACGGA
GCTCTCAGAAACTGGGGAGGCCGATGTGAAGTATTTGGAAATGGGAGACAACCATGATCCAGCC
CCAGAACCCACTGAATTAACTAATGATCCCCAGAACATACATCTGAAACAGGAGCACAATTATT
GCAGCCCGACCAAGAGGAGCCAGTGTGACGCTCAGGCAGTCCTACAGATAAACAATGCCTGCAT
CAGGACATTAAACTTGGAGAGCCCCGTGAAGACTGATATGTTTGATGAGTTTTTTCCTACTGCG
TTAACTTTGGCAAATGACACCTTCGACTTAACTCATTTTGATGAGTATCTGTTTGAGAATTATT
GAATATTTGTAAACTCTTTAATATTTATTATTGCTGTTAGAAAAACTTAACTGCGTTTTCAGGT
ATACACTGTCCTTGTAATAATCATGAATGAAATTTAAGCTGCTGAAAGTTTTACCTTTGGTCCT
GCCCCTGAAGCATGTAACCTGTTATACAAATTAAAATCATTAGGAATTGTT

hide sequence

RefSeq Acc Id:

XM_013515877 ⟹ XP_013371331

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	15,173,448 - 15,212,440 (-)	NCBI

Sequence:

show sequence

CCGGAAGTTGCTTTCCTGGCCGAGCGGCGGTGAGGGAGGAGTAGTGCGCGCGGAACGTGGGTTG
AACGTTGCGATTTGGTGTGGCGCGCAAGCTGGAACAGGAGTTCGGACCGGCCCGGTACGAAGAA
GGGGAGTGCTCGGGGCAGAATTATGATTCAGCTAAAGTTACATCAGATGGATATTGTCCTGCTT
GTAGAGAGAAGGGAAAGTTAAAAGCATTAAAGACTTACCGAATTAGTTTTCAAGAATCTATCTT
TTTGTGTGAGGATCTGCAGCCTTCAACGCGATTCAGTTGGGACAGCTGATGCCTTGGGACAGAA
TGAGACTTCGGCAACTGATAATGTTGATATGGCTACTGAAGAGCCCGCCACAGTTGATGTTTCT
GGAACTGGGGAAATTTCTTCTCGAAGTGAAGGATGTTCATCTGAATGTGAAACGCCACTGGAGA
GAACATACTCACTGTGCCAGACTTCATGTGTCCAGTGGAGAAATGCTAATGCGCTGTGCTGGTT
AGATTCTATCCTGTCAGTTTTGGTGCACTTGGAAGCCTTGAAGAACATTGTGACTGAATTGTGT
TCTAAGGACTCTGTATTTTGGCGGTTGTTTGAGAAATATAATCAAGCAAATAAGCTCCTGTACA
CCAGTCAGTTGGATGAAGTTAAAGATGGAGATTGTAAAAAACTTACTTCAGAAATTTTTGCAGA
GATAGAGACCTGTCTGAATGAAGTCAGAGATGAAATTTTTACTAAACTTCAGCCCCAGCTTAGA
TGCACATTAGGTGAGAGAGAAAGCCCTGTGTTTGCATTTCCTCTGCTCTTAAGAATAGAAGACC
CCATTGGAAAGCTCTTCACGTATTCTTTTTCCTGGAACTTTGAATGTTCACAGTGTGGGCACCG
ATACCAAAACAGATGTGTGAAGAATCTCGTCACCTTTACAAATGTCATCCCCGGGTGGCACCCG
CTTAATGCTGCCCATTTCGGCCCGTGCAACAGTTGCAACAGTAGATCACAAATAAGAAAGATGG
TGTTGGAAAAAGTGTCTCCCATATTCATGCTGCACTTCGTAGAAGGGTTACCGCGGAATGACTT
GCAGCACTACTCGTTTCATTTTGGAGGCTGTCTTTATCAAGTAACAGCCATAATTCAGTACCAA
GCCAATGACCATTTCATAACGTGGATTTTACATGCAGATGGTAGTTGGCTGGAATGTGACGACC
TAAAGGGTTTGTGTGCGCAAAGGCATGAGAAATTTGCAGTTCCCGCTTCAGAGATACATATTGT
TATTTGGGAAAGAAAAACATCCCAAGCAACAGATGAAGAAGCTGCCTGCCCTCCACTTAAGAAG
ACTAATGATCAGCATGCTTCCGGGGAAGAGAGACCAGCAACTCCAGCATCGCGTCCTCCGGCCC
GGGCTGCCTCAGCAGAGACGTCTTCACTCACTCTCCCCACGTCTGCGGCCCCTGCTCCTCATAG
CCTCCCACAGGACAGAGCTGTGGCTCAGGAAGATCACAGACATTCAGATCCAAGAGTTTTGGCT
GACAGTAATGTTTTACCTCTGACACTTGAAGGCTCTGTCTGGAAGACTGCCTCAGTTTTTCAGG
TTACCACTGAAGCATTCCTACCCCAAAACACACCTGTGGCAGAAAATACAGGGCTTATCAAAAC
AAACACTTTGCAATTGCAGGAATCACCAGTGGGTTCTTCAGTGTCAGCTCCATGTAAAGAAAAA
CTTACCCAAGCCCAGCTTGTGGGCTTAAGTTTCCCATTGCAAGTTGTAAACACAAACACACAGT
TGGAACTGCTGAATACAGAACATGCTGCAATTACTCAGCCTGTGAATAACGCGCAGGCTGCTGG
TCTTGTCCAGGGAGTAAAGTCAGGAGAAGTTGCAAAGGACCCTGAGTTAAAACAGACCCTTTCA
TGGAAAACTGAGAAATTAAAACCAGAAACACCTTCTGTATCTCAGGTATCGAATTTGAAGAAAA
AAGCCACAGCAGATCCACAGTCTGTGACCGCCACATCATCACAGAATCAGCCCCCAAAAGAAAA
TCAGAAGAAACCATTTGTGGGCAGTTGGGTTAAAGGCCTGCTAAGCAGGGGTGCTTCTTTTATG
CCCTCCTGTGTTTCGGCTAATAATAGAAACACTATAACTGATTTGCAGCCTTCAGTTAAAGGGG
CGCGTAATTTTGGTGGCTTTAAAACTAAAGGTACAAAGCAAAAGGCCAGCCACATATCAAAGAA
AGCCCGCAGATGTGCAGATCAGCTTCCTGCAGTCCGCAACCCCCAACCAGATCTTCCACCTTCA
GGGAATACAGCTGCTTCTCCACGCACAAGTGAGAATACCGCTTCAGAACCTCCGCTGGAGCTGG
ACAGGGCCTCACGTGGAGCTCACCTCAGTCACCCTTCTCCCGGAAGGGAAAATGGGGTTTCTTC
AGCAAACCATGGGGACTTGGCTGAAGGTCAGATTCATAAGCTTCGTCTGAAACTTCTTAGAAAA
CTAAAGGCAAAAAAGAAGAAGTTAGCTGCCCTCATGGCTGCCTCTCAATGTGGAGGAATTCCTA
GTGAAAATTTAGAAAATGGGCCCCAGTGTGAGTCTCCAAATGATTGTGAATCAATAGAAGACTT
GTTAAGTGAACTGCAGTATCATATTGATGTTGCAGACAGTAAATCTGGAGGTACCAGTGTTTCC
TCATGCAATCAAATGCATGAAGAAATTTTAGCAGAATTATTGTCTCCAGGTATTTCAACGGAGC
TCTCAGAAACTGGGGAGGCCGATGTGAAGTATTTGGAAATGGGAGACAACCATGATCCAGCCCC
AGAACCCACTGAATTAACTAATGATCCCCAGAACATACATCTGAAACAGGAGCACAATTATTGC
AGCCCGACCAAGAGGAGCCAGTGTGACGCTCAGGCAGTCCTACAGATAAACAATGCCTGCATCA
GGACATTAAACTTGGAGAGCCCCGTGAAGACTGATATGTTTGATGAGTTTTTTCCTACTGCGTT
AACTTTGGCAAATGACACCTTCGACTTAACTCATTTTGATGAGTATCTGTTTGAGAATTATTGA
ATATTTGTAAACTCTTTAATATTTATTATTGCTGTTAGAAAAACTTAACTGCGTTTTCAGGTAT
ACACTGTCCTTGTAATAATCATGAATGAAATTTAAGCTGCTGAAAGTTTTACCTTTGGTCCTGC
CCCTGAAGCATGTAACCTGTTATACAAATTAAAATCATTAGGAATTGTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005387799	(Get FASTA)	NCBI Sequence Viewer
	XP_013371330	(Get FASTA)	NCBI Sequence Viewer
	XP_013371331	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004406
	ENSCLAP00000004406.1

RefSeq Acc Id:	XP_005387799 ⟸ XM_005387742
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2URE0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMDSSKIGNGLPVIGQGPDIGISSLPMVGYLGKNYDSAKVTSDGYCPACREKGKLKALKTYRIS FQESIFLCEDLQCIYPLGSKSLNNLISPDSEDCHTPDKPQKRKILETSCKDLSVLSNSKKTRTH IFTGDKQILNREHNGEVCTELSSDSLPGSLQRDSVGTADALGQNETSATDNVDMATEEPATVDV SGTGEISSRSEGCSSECETPLERTYSLCQTSCVQWRNANALCWLDSILSVLVHLEALKNIVTEL CSKDSVFWRLFEKYNQANKLLYTSQLDEVKDGDCKKLTSEIFAEIETCLNEVRDEIFTKLQPQL RCTLGERESPVFAFPLLLRIEDPIGKLFTYSFSWNFECSQCGHRYQNRCVKNLVTFTNVIPGWH PLNAAHFGPCNSCNSRSQIRKMVLEKVSPIFMLHFVEGLPRNDLQHYSFHFGGCLYQVTAIIQY QANDHFITWILHADGSWLECDDLKGLCAQRHEKFAVPASEIHIVIWERKTSQATDEEAACPPLK KTNDQHASGEERPATPASRPPARAASAETSSLTLPTSAAPAPHSLPQDRAVAQEDHRHSDPRVL ADSNVLPLTLEGSVWKTASVFQVTTEAFLPQNTPVAENTGLIKTNTLQLQESPVGSSVSAPCKE KLTQAQLVGLSFPLQVVNTNTQLELLNTEHAAITQPVNNAQAAGLVQGVKSGEVAKDPELKQTL SWKTEKLKPETPSVSQVSNLKKKATADPQSVTATSSQNQPPKENQKKPFVGSWVKGLLSRGASF MPSCVSANNRNTITDLQPSVKGARNFGGFKTKGTKQKASHISKKARRCADQLPAVRNPQPDLPP SGNTAASPRTSENTASEPPLELDRASRGAHLSHPSPGRENGVSSANHGDLAEGQIHKLRLKLLR KLKAKKKKLAALMAASQCGGIPSENLENGPQCESPNDCESIEDLLSELQYHIDVADSKSGGTSV SSCNQMHEEILAELLSPGISTELSETGEADVKYLEMGDNHDPAPEPTELTNDPQNIHLKQEHNY CSPTKRSQCDAQAVLQINNACIRTLNLESPVKTDMFDEFFPTALTLANDTFDLTHFDEYLFENY hide sequence

RefSeq Acc Id:

XP_013371331 ⟸ XM_013515877

- Peptide Label:

isoform X3

- Sequence:

show sequence

MATEEPATVDVSGTGEISSRSEGCSSECETPLERTYSLCQTSCVQWRNANALCWLDSILSVLVH
LEALKNIVTELCSKDSVFWRLFEKYNQANKLLYTSQLDEVKDGDCKKLTSEIFAEIETCLNEVR
DEIFTKLQPQLRCTLGERESPVFAFPLLLRIEDPIGKLFTYSFSWNFECSQCGHRYQNRCVKNL
VTFTNVIPGWHPLNAAHFGPCNSCNSRSQIRKMVLEKVSPIFMLHFVEGLPRNDLQHYSFHFGG
CLYQVTAIIQYQANDHFITWILHADGSWLECDDLKGLCAQRHEKFAVPASEIHIVIWERKTSQA
TDEEAACPPLKKTNDQHASGEERPATPASRPPARAASAETSSLTLPTSAAPAPHSLPQDRAVAQ
EDHRHSDPRVLADSNVLPLTLEGSVWKTASVFQVTTEAFLPQNTPVAENTGLIKTNTLQLQESP
VGSSVSAPCKEKLTQAQLVGLSFPLQVVNTNTQLELLNTEHAAITQPVNNAQAAGLVQGVKSGE
VAKDPELKQTLSWKTEKLKPETPSVSQVSNLKKKATADPQSVTATSSQNQPPKENQKKPFVGSW
VKGLLSRGASFMPSCVSANNRNTITDLQPSVKGARNFGGFKTKGTKQKASHISKKARRCADQLP
AVRNPQPDLPPSGNTAASPRTSENTASEPPLELDRASRGAHLSHPSPGRENGVSSANHGDLAEG
QIHKLRLKLLRKLKAKKKKLAALMAASQCGGIPSENLENGPQCESPNDCESIEDLLSELQYHID
VADSKSGGTSVSSCNQMHEEILAELLSPGISTELSETGEADVKYLEMGDNHDPAPEPTELTNDP
QNIHLKQEHNYCSPTKRSQCDAQAVLQINNACIRTLNLESPVKTDMFDEFFPTALTLANDTFDL
THFDEYLFENY

hide sequence

RefSeq Acc Id:

XP_013371330 ⟸ XM_013515876

- Peptide Label:

isoform X2

- Sequence:

show sequence

MMQSLQRDSVGTADALGQNETSATDNVDMATEEPATVDVSGTGEISSRSEGCSSECETPLERTY
SLCQTSCVQWRNANALCWLDSILSVLVHLEALKNIVTELCSKDSVFWRLFEKYNQANKLLYTSQ
LDEVKDGDCKKLTSEIFAEIETCLNEVRDEIFTKLQPQLRCTLGERESPVFAFPLLLRIEDPIG
KLFTYSFSWNFECSQCGHRYQNRCVKNLVTFTNVIPGWHPLNAAHFGPCNSCNSRSQIRKMVLE
KVSPIFMLHFVEGLPRNDLQHYSFHFGGCLYQVTAIIQYQANDHFITWILHADGSWLECDDLKG
LCAQRHEKFAVPASEIHIVIWERKTSQATDEEAACPPLKKTNDQHASGEERPATPASRPPARAA
SAETSSLTLPTSAAPAPHSLPQDRAVAQEDHRHSDPRVLADSNVLPLTLEGSVWKTASVFQVTT
EAFLPQNTPVAENTGLIKTNTLQLQESPVGSSVSAPCKEKLTQAQLVGLSFPLQVVNTNTQLEL
LNTEHAAITQPVNNAQAAGLVQGVKSGEVAKDPELKQTLSWKTEKLKPETPSVSQVSNLKKKAT
ADPQSVTATSSQNQPPKENQKKPFVGSWVKGLLSRGASFMPSCVSANNRNTITDLQPSVKGARN
FGGFKTKGTKQKASHISKKARRCADQLPAVRNPQPDLPPSGNTAASPRTSENTASEPPLELDRA
SRGAHLSHPSPGRENGVSSANHGDLAEGQIHKLRLKLLRKLKAKKKKLAALMAASQCGGIPSEN
LENGPQCESPNDCESIEDLLSELQYHIDVADSKSGGTSVSSCNQMHEEILAELLSPGISTELSE
TGEADVKYLEMGDNHDPAPEPTELTNDPQNIHLKQEHNYCSPTKRSQCDAQAVLQINNACIRTL
NLESPVKTDMFDEFFPTALTLANDTFDLTHFDEYLFENY

hide sequence

RefSeq Acc Id:

ENSCLAP00000004406 ⟸ ENSCLAT00000004489

Protein Domains

USP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003130	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004489	ENTREZGENE
	ENSCLAT00000004489.1	UniProtKB/TrEMBL
InterPro	DUF4650	UniProtKB/TrEMBL
	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	Peptidase_C98	UniProtKB/TrEMBL
	USP_dom	UniProtKB/TrEMBL
	USPL1	UniProtKB/TrEMBL
NCBI Gene	Uspl1	ENTREZGENE
PANTHER	PTHR15294	UniProtKB/TrEMBL
	SUMO-SPECIFIC ISOPEPTIDASE USPL1	UniProtKB/TrEMBL
Pfam	DUF4650	UniProtKB/TrEMBL
	Peptidase_C98	UniProtKB/TrEMBL
PROSITE	USP_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54001	UniProtKB/TrEMBL
UniProt	A0A8C2URE0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar