Abhd4 (abhydrolase domain containing 4, N-acyl phospholipase B) - Rat Genome Database

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Gene: Abhd4 (abhydrolase domain containing 4, N-acyl phospholipase B) Chinchilla lanigera
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Symbol: Abhd4
Name: abhydrolase domain containing 4, N-acyl phospholipase B
RGD ID: 8826518
Description: ENCODES a protein that exhibits lysophospholipase activity (ortholog); INVOLVED IN N-acylethanolamine metabolic process (ortholog); N-acylphosphatidylethanolamine metabolic process (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: abhydrolase domain containing 4; abhydrolase domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,650,109 - 37,663,459 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,650,220 - 37,662,950 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Abhd4ChinchillaBrain-Lung-Thyroid Syndrome  ISOABHD4 (Homo sapiens)8554872ClinVar Annotator: match by term: Brain-lung-thyroid syndromeClinVarPMID:25741868


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Abhd4ChinchillaN-acylethanolamine metabolic process acts_upstream_of_or_withinISOAbhd4 (Mus musculus)9068941 PMID:16818490MGIPMID:16818490
Abhd4ChinchillaN-acylphosphatidylethanolamine metabolic process involved_inISOAbhd4 (Mus musculus)9068941 PMID:25853435UniProtPMID:25853435

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Abhd4Chinchillalysophospholipase activity enablesISOAbhd4 (Mus musculus)9068941 PMID:16818490MGIPMID:16818490
Abhd4Chinchillaprotein binding enablesISOUniProtKB:O60664 more ...9068941 PMID:32296183IntActPMID:32296183


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:30032202  



Abhd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,650,109 - 37,663,459 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,650,220 - 37,662,950 (-)NCBIChiLan1.0ChiLan1.0
ABHD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,598,300 - 22,612,963 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,598,290 - 22,612,963 (+)EnsemblGRCh38hg38GRCh38
GRCh371423,067,209 - 23,081,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,136,987 - 22,151,105 (+)NCBINCBI36Build 36hg18NCBI36
Build 341422,136,986 - 22,151,104NCBI
Celera142,930,195 - 2,944,309 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,185,554 - 3,199,668 (+)NCBIHuRef
CHM1_11423,066,140 - 23,080,261 (+)NCBICHM1_1
T2T-CHM13v2.01416,796,030 - 16,810,693 (+)NCBIT2T-CHM13v2.0
Abhd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,491,586 - 54,506,626 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,491,645 - 54,508,094 (+)EnsemblGRCm39 Ensembl
GRCm381454,254,129 - 54,269,169 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,254,188 - 54,270,637 (+)EnsemblGRCm38mm10GRCm38
MGSCv371454,878,972 - 54,888,840 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,217,302 - 53,227,172 (+)NCBIMGSCv36mm8
Celera1452,055,549 - 52,065,503 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.71NCBI
Abhd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81531,674,090 - 31,686,051 (+)NCBIGRCr8
mRatBN7.21527,697,384 - 27,716,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1527,704,113 - 27,716,966 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,545,656 - 29,557,577 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01530,692,485 - 30,704,413 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01528,942,527 - 28,954,454 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01532,888,233 - 32,906,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1532,894,938 - 32,906,850 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01536,699,362 - 36,717,405 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,312,516 - 32,325,153 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,328,007 - 32,340,852 (+)NCBI
Celera1527,285,833 - 27,297,758 (+)NCBICelera
Cytogenetic Map15p13NCBI
ABHD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,046,482 - 24,060,604 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,262,968 - 23,277,090 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,434,357 - 3,448,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,535,753 - 21,549,856 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,535,753 - 21,549,856 (+)Ensemblpanpan1.1panPan2
ABHD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.182,997,112 - 3,011,524 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl82,997,202 - 3,011,056 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha82,946,776 - 2,961,187 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,104,518 - 3,118,934 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,104,608 - 3,119,469 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.182,797,208 - 2,811,610 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.082,858,617 - 2,873,025 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,120,646 - 3,135,054 (+)NCBIUU_Cfam_GSD_1.0
Abhd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864034,717,075 - 34,730,431 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,658,302 - 1,671,853 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,658,287 - 1,671,848 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABHD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl776,396,484 - 76,431,809 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1776,396,548 - 76,431,836 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,633,143 - 81,656,262 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABHD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12922,967,290 - 22,981,017 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2922,967,374 - 22,979,622 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605923,442,642 - 23,465,028 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abhd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248259,088,957 - 9,102,419 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248259,088,907 - 9,101,474 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSCLAT00000018405   ⟹   ENSCLAP00000018226
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540937,650,109 - 37,663,459 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000018406   ⟹   ENSCLAP00000018227
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540937,651,545 - 37,660,056 (-)Ensembl
RefSeq Acc Id: XM_005377129   ⟹   XP_005377186
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540937,650,220 - 37,662,950 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005377130   ⟹   XP_005377187
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540937,650,220 - 37,662,842 (-)NCBI
Sequence:
Protein RefSeqs XP_005377186 (Get FASTA)   NCBI Sequence Viewer  
  XP_005377187 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018226
  ENSCLAP00000018226.1
  ENSCLAP00000018227
  ENSCLAP00000018227.1
RefSeq Acc Id: XP_005377186   ⟸   XM_005377129
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VSJ8 (UniProtKB/TrEMBL),   A0A8C2VVF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005377187   ⟸   XM_005377130
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VVF4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000018226   ⟸   ENSCLAT00000018405
Ensembl Acc Id: ENSCLAP00000018227   ⟸   ENSCLAT00000018406
AB hydrolase-1



1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000012500 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018405 ENTREZGENE
  ENSCLAT00000018405.1 UniProtKB/TrEMBL
  ENSCLAT00000018406 ENTREZGENE
  ENSCLAT00000018406.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  AB_hydrolase_1 UniProtKB/TrEMBL
NCBI Gene Abhd4 ENTREZGENE
PANTHER (LYSO)-N-ACYLPHOSPHATIDYLETHANOLAMINE LIPASE UniProtKB/TrEMBL
  RE40534P-RELATED UniProtKB/TrEMBL
Pfam Abhydrolase_1 UniProtKB/TrEMBL
PRINTS ABHYDROLASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A8C2VSJ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VVF4 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-28 Abhd4  abhydrolase domain containing 4, N-acyl phospholipase B  Abhd4  abhydrolase domain containing 4  Symbol and/or name change 5135510 APPROVED