Naa40 (N-alpha-acetyltransferase 40, NatD catalytic subunit) - Rat Genome Database

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Gene: Naa40 (N-alpha-acetyltransferase 40, NatD catalytic subunit) Chinchilla lanigera
Analyze
Symbol: Naa40
Name: N-alpha-acetyltransferase 40, NatD catalytic subunit
RGD ID: 8819946
Description: ENCODES a protein that exhibits histone H2A acetyltransferase activity (ortholog); histone H4 acetyltransferase activity (ortholog); peptide-serine-alpha-N-acetyltransferase activity (ortholog); INVOLVED IN lipid metabolic process (ortholog); ASSOCIATED WITH high grade glioma (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN centriolar satellite (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: N(alpha)-acetyltransferase 40, NatD catalytic subunit; N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog; N-alpha-acetyltransferase 40
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542221,067,751 - 21,087,277 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542221,070,615 - 21,087,238 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Naa40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542221,067,751 - 21,087,277 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542221,070,615 - 21,087,238 (-)NCBIChiLan1.0ChiLan1.0
NAA40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381163,939,002 - 63,957,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1163,938,959 - 63,957,319 (+)EnsemblGRCh38hg38GRCh38
GRCh371163,706,474 - 63,724,791 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,463,044 - 63,481,020 (+)NCBINCBI36Build 36hg18NCBI36
Celera1161,033,211 - 61,051,232 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,035,480 - 60,053,164 (+)NCBIHuRef
CHM1_11163,589,790 - 63,607,808 (+)NCBICHM1_1
T2T-CHM13v2.01163,928,708 - 63,947,014 (+)NCBIT2T-CHM13v2.0
Naa40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,203,033 - 7,218,587 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,203,033 - 7,218,548 (-)EnsemblGRCm39 Ensembl
GRCm38197,225,668 - 7,241,222 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,225,668 - 7,241,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv37197,300,158 - 7,315,712 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36197,292,321 - 7,308,266 (-)NCBIMGSCv36mm8
Celera197,002,838 - 7,018,392 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.29NCBI
Naa40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,842,686 - 213,860,079 (-)NCBIGRCr8
mRatBN7.21204,410,636 - 204,430,890 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,413,498 - 204,430,717 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,763,429 - 212,780,786 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,858,732 - 219,876,094 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,549,784 - 212,567,145 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,478,021 - 222,495,382 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,478,021 - 222,495,382 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,468,108 - 229,485,469 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,897,105 - 209,915,496 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1201,945,626 - 201,962,987 (-)NCBICelera
Cytogenetic Map1q43NCBI
NAA40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,165,651 - 65,184,025 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,211,156 - 66,237,233 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,296,331 - 59,312,317 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,646,077 - 62,661,595 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1162,646,077 - 62,661,589 (+)Ensemblpanpan1.1panPan2
NAA40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,054,662 - 53,077,156 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,048,903 - 53,069,496 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,661,070 - 51,682,615 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,099,652 - 54,121,185 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,093,917 - 54,121,285 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,202,065 - 53,223,634 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,777,755 - 52,799,391 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,561,872 - 53,583,472 (-)NCBIUU_Cfam_GSD_1.0
Naa40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,739,440 - 8,756,442 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365995,181,483 - 5,198,853 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365995,181,794 - 5,198,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAA40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,115,289 - 8,129,973 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,115,288 - 8,130,075 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,282,388 - 7,292,463 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAA40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,289,015 - 10,307,909 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl110,288,266 - 10,307,932 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,625,757 - 107,644,861 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Naa40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,303,294 - 22,319,117 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,303,022 - 22,319,120 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024829   ⟹   ENSCLAP00000024592
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542221,067,751 - 21,087,277 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000024830   ⟹   ENSCLAP00000024593
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542221,072,507 - 21,079,692 (-)Ensembl
RefSeq Acc Id: XM_005384655   ⟹   XP_005384712
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542221,070,615 - 21,087,238 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384712 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024592
  ENSCLAP00000024592.1
  ENSCLAP00000024593.1
RefSeq Acc Id: XP_005384712   ⟸   XM_005384655
- UniProtKB: A0A8C2W3E0 (UniProtKB/TrEMBL),   A0A8C2W3D8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000024592   ⟸   ENSCLAT00000024829
Ensembl Acc Id: ENSCLAP00000024593   ⟸   ENSCLAT00000024830
Protein Domains
N-acetyltransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016890 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024829 ENTREZGENE
  ENSCLAT00000024829.1 UniProtKB/TrEMBL
  ENSCLAT00000024830.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.630.30 UniProtKB/TrEMBL
InterPro Acyl_CoA_acyltransferase UniProtKB/TrEMBL
  GNAT_dom UniProtKB/TrEMBL
  NAA40 UniProtKB/TrEMBL
NCBI Gene Naa40 ENTREZGENE
PANTHER N-ALPHA-ACETYLTRANSFERASE 40 UniProtKB/TrEMBL
  PTHR20531 UniProtKB/TrEMBL
Pfam Acetyltransf_1 UniProtKB/TrEMBL
PROSITE GNAT UniProtKB/TrEMBL
Superfamily-SCOP SSF55729 UniProtKB/TrEMBL
UniProt A0A8C2W3D8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W3E0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-03 Naa40  N-alpha-acetyltransferase 40, NatD catalytic subunit  Naa40  N(alpha)-acetyltransferase 40, NatD catalytic subunit  Symbol and/or name change 5135510 APPROVED
2015-08-25 Naa40  N(alpha)-acetyltransferase 40, NatD catalytic subunit    N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED