Naa40 (N-alpha-acetyltransferase 40, NatD catalytic subunit) - Rat Genome Database

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Gene: Naa40 (N-alpha-acetyltransferase 40, NatD catalytic subunit) Heterocephalus glaber
Analyze
Symbol: Naa40
Name: N-alpha-acetyltransferase 40, NatD catalytic subunit (Ensembl:N(alpha)-acetyltransferase 40, NatD catalytic subunit)
RGD ID: 18915610
Description: ENCODES a protein that exhibits acyltransferase activity (inferred); histone H2A acetyltransferase activity (inferred); histone H4 acetyltransferase activity (inferred); INVOLVED IN lipid metabolic process (ortholog); ASSOCIATED WITH high grade glioma (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN centriolar satellite (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog; N-alpha-acetyltransferase 40
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,303,294 - 22,319,117 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,303,022 - 22,319,120 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Naa40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,303,294 - 22,319,117 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,303,022 - 22,319,120 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NAA40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381163,939,002 - 63,957,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1163,938,959 - 63,957,319 (+)EnsemblGRCh38hg38GRCh38
GRCh371163,706,474 - 63,724,791 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,463,044 - 63,481,020 (+)NCBINCBI36Build 36hg18NCBI36
Celera1161,033,211 - 61,051,232 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,035,480 - 60,053,164 (+)NCBIHuRef
CHM1_11163,589,790 - 63,607,808 (+)NCBICHM1_1
T2T-CHM13v2.01163,928,708 - 63,947,014 (+)NCBIT2T-CHM13v2.0
Naa40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,203,033 - 7,218,587 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,203,033 - 7,218,548 (-)EnsemblGRCm39 Ensembl
GRCm38197,225,668 - 7,241,222 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,225,668 - 7,241,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv37197,300,158 - 7,315,712 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36197,292,321 - 7,308,266 (-)NCBIMGSCv36mm8
Celera197,002,838 - 7,018,392 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.29NCBI
Naa40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,842,686 - 213,860,079 (-)NCBIGRCr8
mRatBN7.21204,410,636 - 204,430,890 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,413,498 - 204,430,717 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,763,429 - 212,780,786 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,858,732 - 219,876,094 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,549,784 - 212,567,145 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,478,021 - 222,495,382 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,478,021 - 222,495,382 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,468,108 - 229,485,469 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,897,105 - 209,915,496 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1201,945,626 - 201,962,987 (-)NCBICelera
Cytogenetic Map1q43NCBI
Naa40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542221,067,751 - 21,087,277 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542221,070,615 - 21,087,238 (-)NCBIChiLan1.0ChiLan1.0
NAA40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,165,651 - 65,184,025 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,211,156 - 66,237,233 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,296,331 - 59,312,317 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,646,077 - 62,661,595 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1162,646,077 - 62,661,589 (+)Ensemblpanpan1.1panPan2
NAA40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,054,662 - 53,077,156 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,048,903 - 53,069,496 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,661,070 - 51,682,615 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,099,652 - 54,121,185 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,093,917 - 54,121,285 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,202,065 - 53,223,634 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,777,755 - 52,799,391 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,561,872 - 53,583,472 (-)NCBIUU_Cfam_GSD_1.0
Naa40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,739,440 - 8,756,442 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365995,181,483 - 5,198,853 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365995,181,794 - 5,198,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAA40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,115,289 - 8,129,973 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,115,288 - 8,130,075 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,282,388 - 7,292,463 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAA40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,289,015 - 10,307,909 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl110,288,266 - 10,307,932 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,625,757 - 107,644,861 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000018563   ⟹   ENSHGLP00000018379
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476722,303,294 - 22,319,117 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000018564   ⟹   ENSHGLP00000018380
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476722,305,637 - 22,311,784 (-)Ensembl
RefSeq Acc Id: XM_004852555   ⟹   XP_004852612
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476722,303,022 - 22,319,117 (-)NCBI
RefSeq Acc Id: XM_004852556   ⟹   XP_004852613
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476722,303,022 - 22,319,120 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004852612 (Get FASTA)   NCBI Sequence Viewer  
  XP_004852613 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018379
  ENSHGLP00000036176
  ENSHGLP00100023998
GenBank Protein JAO01919 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004852613   ⟸   XM_004852556
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004852612   ⟸   XM_004852555
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JC42 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000018380   ⟸   ENSHGLT00000018564
Ensembl Acc Id: ENSHGLP00000018379   ⟸   ENSHGLT00000018563


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013175 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100017625 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000018563 ENTREZGENE
  ENSHGLT00000077178 UniProtKB/TrEMBL
  ENSHGLT00100024243 UniProtKB/TrEMBL
Gene3D-CATH 3.40.630.30 UniProtKB/TrEMBL
InterPro Acyl_CoA_acyltransferase UniProtKB/TrEMBL
  GNAT_dom UniProtKB/TrEMBL
  NAA40 UniProtKB/TrEMBL
KEGG Report hgl:101707230 UniProtKB/TrEMBL
NCBI Gene Naa40 ENTREZGENE
PANTHER N-ALPHA-ACETYLTRANSFERASE 40 UniProtKB/TrEMBL
  PTHR20531 UniProtKB/TrEMBL
Pfam Acetyltransf_1 UniProtKB/TrEMBL
PROSITE GNAT UniProtKB/TrEMBL
Superfamily-SCOP SSF55729 UniProtKB/TrEMBL
UniProt A0A0P6JC42 ENTREZGENE, UniProtKB/TrEMBL