Gene: Rapgefl1 (Rap guanine nucleotide exchange factor like 1) Chinchilla lanigera |
|
Analyze |
|
Symbol: |
Rapgefl1 |
Name: |
Rap guanine nucleotide exchange factor like 1 |
RGD ID: |
8819795 |
Description: |
ASSOCIATED WITH familial cold autoinflammatory syndrome 2 (ortholog); hypertrophic cardiomyopathy 25 (ortholog); prostate cancer (ortholog) |
Type: |
protein-coding
|
RefSeq Status: |
MODEL |
Previously known as: |
Rap guanine nucleotide exchange factor (GEF)-like 1; rap guanine nucleotide exchange factor-like 1 |
RGD Orthologs |
|
Alliance Orthologs |
|
More Info |
more info ...
|
More Info |
|
Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
NCBI Annotation Information: |
Annotation category: partial on reference assembly |
Position: |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955451 | 14,809,630 - 14,816,762 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955451 | 14,802,094 - 14,818,096 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
JBrowse: |
View Region in Genome Browser (JBrowse)
|
Model |
|
Imported Disease Annotations - ClinVar
|
References
Additional References at PubMed
Genomics
Comparative Map Data
Rapgefl1 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955451 | 14,809,630 - 14,816,762 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955451 | 14,802,094 - 14,818,096 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
RAPGEFL1 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 17 | 40,177,010 - 40,195,650 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 40,177,010 - 40,195,656 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 38,333,263 - 38,351,902 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 17 | 35,591,394 - 35,605,426 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 17 | 35,588,138 - 35,605,426 | NCBI | | | | | Celera | 17 | 34,994,758 - 35,012,421 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | q21.1 | NCBI | | | | | HuRef | 17 | 34,127,434 - 34,145,100 (+) | NCBI | | HuRef | | | CHM1_1 | 17 | 38,569,927 - 38,587,592 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 41,040,889 - 41,059,520 (+) | NCBI | | T2T-CHM13v2.0 | | |
|
Rapgefl1 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 11 | 98,727,611 - 98,744,519 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 98,727,611 - 98,744,523 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 98,836,785 - 98,853,009 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 98,836,785 - 98,853,697 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 98,698,099 - 98,714,319 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 98,653,244 - 98,669,095 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 108,491,920 - 108,508,404 (+) | NCBI | | Celera | | | Cytogenetic Map | 11 | D | NCBI | | | | | cM Map | 11 | 62.7 | NCBI | | | | |
|
Rapgefl1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 10 | 84,289,980 - 84,306,614 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 83,793,711 - 83,810,373 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 83,793,694 - 83,810,371 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 10 | 86,749,220 - 86,765,677 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 86,763,117 - 86,765,675 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 86,545,478 - 86,561,332 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 87,607,651 - 87,620,668 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 10 | 82,541,374 - 82,554,813 (+) | NCBI | | Celera | | | Cytogenetic Map | 10 | q31 | NCBI | | | | |
|
RAPGEFL1 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 19 | 24,759,538 - 24,777,374 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 17 | 26,654,350 - 26,672,187 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 17 | 17,093,714 - 17,111,187 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 17 | 17,315,114 - 17,335,258 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 17 | 17,315,114 - 17,335,258 (-) | Ensembl | panpan1.1 | | panPan2 | |
|
RAPGEFL1 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 9 | 22,385,970 - 22,399,584 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 9 | 22,387,786 - 22,394,887 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 9 | 21,846,496 - 21,871,864 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 9 | 23,166,995 - 23,192,372 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 9 | 23,167,166 - 23,192,844 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 9 | 21,940,814 - 21,966,167 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 9 | 22,199,543 - 22,224,894 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 9 | 22,324,485 - 22,349,849 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
Rapgefl1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405602 | 21,779,660 - 21,793,695 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936490 | 15,281,433 - 15,296,636 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936490 | 15,281,462 - 15,295,479 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
RAPGEFL1 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 12 | 22,181,849 - 22,195,840 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 12 | 22,180,928 - 22,195,841 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 12 | 22,546,729 - 22,561,648 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
RAPGEFL1 (Chlorocebus sabaeus - green monkey) |
|
Rapgefl1 (Heterocephalus glaber - naked mole-rat) |
|
Expression
RNA-SEQ Expression
Sequence
Ensembl Acc Id: |
ENSCLAT00000020122 ⟹ ENSCLAP00000019929 |
Type: |
CODING |
Position: |
Chinchilla Assembly | Chr | Position (strand) | Source |
---|
ChiLan1.0 Ensembl | NW_004955451 | 14,809,630 - 14,816,762 (+) | Ensembl |
|
RefSeq Acc Id: |
XM_013519122 ⟹ XP_013374576 |
Type: |
CODING |
Position: |
Chinchilla Assembly | Chr | Position (strand) | Source |
---|
ChiLan1.0 | NW_004955451 | 14,802,094 - 14,818,096 (+) | NCBI |
|
Sequence: |
ATGACGAGGCGTGATCTCAGGAGAGGAGAGCTCCAGCGGCTGTTACCACCCCACGGAAGCGCTG GCGAGGCGCGGCCGGGCCCGCCGCGGGCAGCGGAGGAGCTTCCTCCAGACAGGCTCAGCAAGGG AGCCAAACGCGCGGTCCACCCAGCTGCGTGTCCCCCGGAGCCTGCCTTGCTGCGCTTCACCTTC TCCCAGGACATTCGAGGGTCTCTGGCTCACAGGGATTGTGAGGGGTGCACTGCACTGTCTGCGG CCCTGCACGCTCTCTACTCGGATCCTCCTGGCTCCTCTACCCCGAGGAGAAAGACCTGTCCGCA GTGTCCCCCTGCAGAGGAGGGGTCGTCAGTGCCTGGCTGTGGGGACCTCGGCCTCTTCGAGTGT AGAGCTGCTGGGGCGGGGGGCAGCAGCGAGCGGGGGGCAGCAGCGAGCGGGAAGGCACTGTGCC TGGGCTTCCGGCCCGCGGCAGCCAGTCGTCCAGGTGGCGGTGGGGATCGGCGGGCCTCCTGGGG TCATGCCAGCAGCGCCGGCCTGCACTGGGCTGAGGTGCTGGCAGGAGGCCCCAAGACCTGCCAC AACCTGCTGCTCTCTGCCTGCCAGTACCTGTCTCGCAGGCCAGCCCTGCACCACCTACTCTACC TGCCCGAGAGGGCAGGGCCCCTGCGCTCCCCGTCCTCCTACTCCTCCGACGAGCTGTCCCCCGG GGAGCCCCTGACTCCGCCGCCCTGGGCGCCCCTGGGCGCCCCCGAGCGGCCCGAGCACCTTCTG GACCGCGTCCTGGAGCGCCTGGCCGGCGGGGCCACCAGGGACAGCGGCGCCTCAGATATCCTGC TGGATGACATTGTCCTCACACACTCCCTCTTCCTCCCAACGGAGAAATTCCTGCAGGCCCTGCA CCAGTACTTTGTTCGGGCAGGGGGCCTGGAGGACCCGGAGGGGCTGGGCCGGAAGCAGGCCTGC CTAGCCATGCTCCTCCACTTCCTGGACACCTACCAGGGGCTGCTGCAGGAGGAAGAGGGCGCCG GCCACATCATCAAGGACCTGTACCTGCTGATTATGAAGGATGAGTCCCTCTACCAGGACCTCCG GGAGGACACGCTGAGGCTGCACCAGCTCGTGGAGACGGCGGAATTGAAGACCCCCGAGGAGAGC CAGCCGCCCAGCAGGCAGGTGAAGCCGCTCTTCCGCCACTTCCGCCGCATCGACTCCTGCCTGC AGACCCGCGTGGCCTTCCGCGGCTCGGATGAGATCTTCTGCCGGGTCTACATGCCCGACCACTC GTACGTGACCATACGCAGCCGCCTCTCAGCGTCCGTGCAGGACATCTTGGGCTCCGTGACCGAG AAGCTGCAGTACTCTGAGGAGCCTGCTGGCCGGGAGGAGGCCCTCATCCTGGTAGCTGTGGCCT CCTCGGGAGAGAAGGTCCTGCTACAGCCCAATGAAGACTGCGTCTTCACCACACTAGGCATCAA CAGCCACCTGTTTGCCTGTACCCGGGACAGCTATGAGGCCTTGGTGCCCCTCCCTGAGGAGATC CAGGTATCCCCAGGAGACACAGAGATCCACCGAGTGGAGCCGGAGGATGTTGCCAACCATCTGA CGGCCTTCCACTGGGAGCTGTTCCGCTGCGTGCACGAGCTGGAGTTTGTGGACTACGTGTTCCA CGGGGAGCGCGGCCGCCGTGAGACGGCCAATTTGGAGCTGCTGCTGCAGCGCTGCAGCGAGGTC ACCCACTGGGTGGCCACCGAGGTGCTGCTGTGCGAGGCCCCAGGCAAGCGCGCCCAGCTGCTGA AGAAGTTCATCAAAATCGCAGCCATCTGCAAGCAGAACCAGGACCTGCTCTCCTTCTACGCTGT GGTCATGGGGCTGGACAATGCTGCCGTCAGCCGCCTGCGGCTCACCTGGGAGAAGCTGCCAGGG AAATTCAAGAACTTGTTCCGCAAATTTGAGAACCTGACGGACCCCTGCAGGAACCACAAAAGCT ACCGGGAAGTCCTCTCCAAGATGAAGCCCCCCGTGATTCCCTTCGTGCCCCTGATCCTCAAAGA CCTGACGTTCCTGCATGAGGGCAGCAAGACCCTGGTTGACGGCTTGGTGAACTTGGAGAAGCTG CACTCGGTGGCTGAGAAAGTGAGGACAATCCGCAAGTACCGCAGCCGGCCCCTCTGCCTGGACA TGGAGGCCTCGCCCCACCACCTGCAGACCAAGGCCTACGTGCGGCAGTTCCAGGTCATCGACAA CCAGAACCTCCTCTTTGACCTCTCCTACAAGCTGGAGGCCAGTGGCCAGTGAGAGCCACCCCCA CCGGGCTCCTGGGCACCTGGCACCCGAGCACTTTGTACCCCATTCCCACCGCCCCGTGACGGGT ATCTCCCACGAGCAGCTGAGTGGGATGGACTTCTGGGGACTTGTCGGCATCCTGCTGGAAGCCT CTCCCCCATGCCCCTTTAGCCCGAGCCACAGGAAGCAGAGGGCTCCTTCCTCTGTCCCCACCCA GCCAGCTCTGCCTCAGAGATGGAGCTCCTGCCTCCTCTGCCCAGGCAGGAAGGGGTGGCCCTCC CGCTCCTAAGTGAGTTCCCTTTCCCGCCCCACGTGGTCTGGTCTCCCTCGGGTCAGGGATGGAG CCCCGAACGTTGCCACGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGGA GGGAGGGGTCCCTTCTGTTTGGTGCTACCCTTGACTGCGCAGGTGCCCCCAGGGTGGAGTGGGG TGGGCGCCCCCAGCTCCTCTGCTGCCCTGCACGTCAGGCCTGGGGGGCCTGGCTGCTCCGGGGC TGCCCGAGTCCCCCAGCATCCCTGGCAGGCTCCCGGAGAGGGTGTGCTCAGGGAACACAGGCCT CAGCTGCCTGTAGGACCCTCTCTCTGCTCTGCTCTGCAGTTGGTGGGGTGCGGGGAGCCAGGAG CCGGGTGCCTGCCCCGCACATCTCTGCTCCCCTGGCCCTTGTCTGACACTGACCGCACTCACTG CCCCTCCCGCCCTGTTTGTCCCCGCCCCCCCCCCACCGTGCTGGGGGCGTTGGCAGGCAGCTCC CCAAAAGTAGTAGAGTGGAGGCTGGTGGCGAAGACTGTAAAGGGGAAACTAGACTCTGGGGAGG CCTGGAGGGCCTCCGTGTCCCCTCCTGGGGCCCAGCACGAGGGTCTGGGCTCCTGGCAGCTCGG GGTGAGGCTCCCGGGCGGTGCAGGCTCCCTCTTCCTGCCCTCCCGTCTTCCAGCGCAGCTGCCG CTCCCGCTGCTGCTCTGGGGTGTACATATATTTTTTACCCAAAGCTCTGGAATTGTACATTTAT TTTTTAAAACCCTGAAAGAGGGAACAGGCCTTGTATCATATGTAAACACTGTATCATAGGTCAC GTGTACAGTCTGTCATTTCCTGTCCCCTCCACAATGCCTGTGGATGCAAAAGGCGTCCCTGGGC CTCCCGGCGCGCCCCCCCCCCCCTCCCGGTCCCCAGTAGCTTCTCCTGGTCCCCAGCCTACTTG AACATGGCCCCCCAGCCCGGGTCAACAGTGAGCCCCGCACATGGTGCAGACCTGCTTGTCCTCA AGAACCCGATGGGGGGTAGCTGATAAAGTCTGGGAATCAATA
hide sequence
|
RefSeq Acc Id: |
XP_013374576 ⟸ XM_013519122 |
- Sequence: |
MTRRDLRRGELQRLLPPHGSAGEARPGPPRAAEELPPDRLSKGAKRAVHPAACPPEPALLRFTF SQDIRGSLAHRDCEGCTALSAALHALYSDPPGSSTPRRKTCPQCPPAEEGSSVPGCGDLGLFEC RAAGAGGSSERGAAASGKALCLGFRPAAASRPGGGGDRRASWGHASSAGLHWAEVLAGGPKTCH NLLLSACQYLSRRPALHHLLYLPERAGPLRSPSSYSSDELSPGEPLTPPPWAPLGAPERPEHLL DRVLERLAGGATRDSGASDILLDDIVLTHSLFLPTEKFLQALHQYFVRAGGLEDPEGLGRKQAC LAMLLHFLDTYQGLLQEEEGAGHIIKDLYLLIMKDESLYQDLREDTLRLHQLVETAELKTPEES QPPSRQVKPLFRHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTE KLQYSEEPAGREEALILVAVASSGEKVLLQPNEDCVFTTLGINSHLFACTRDSYEALVPLPEEI QVSPGDTEIHRVEPEDVANHLTAFHWELFRCVHELEFVDYVFHGERGRRETANLELLLQRCSEV THWVATEVLLCEAPGKRAQLLKKFIKIAAICKQNQDLLSFYAVVMGLDNAAVSRLRLTWEKLPG KFKNLFRKFENLTDPCRNHKSYREVLSKMKPPVIPFVPLILKDLTFLHEGSKTLVDGLVNLEKL HSVAEKVRTIRKYRSRPLCLDMEASPHHLQTKAYVRQFQVIDNQNLLFDLSYKLEASGQ
hide sequence
|
Ensembl Acc Id: |
ENSCLAP00000019929 ⟸ ENSCLAT00000020122 |
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2016-08-16 |
Rapgefl1 |
Rap guanine nucleotide exchange factor like 1 |
|
Rap guanine nucleotide exchange factor (GEF)-like 1 |
Symbol and/or name change |
5135510 |
APPROVED |
|
|