CUNH22orf39 (chromosome unknown C22orf39 homolog) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CUNH22orf39 (chromosome unknown C22orf39 homolog) Chinchilla lanigera
Analyze
Symbol: CUNH22orf39 (Ensembl: C22orf39)
Name: chromosome unknown C22orf39 homolog (Ensembl:chromosome 22 open reading frame 39)
RGD ID: 8787743
Description: INVOLVED IN negative regulation of long-term synaptic potentiation (ortholog); regulation of synaptic plasticity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN mitochondrion (ortholog); synapse (ortholog); synaptic cleft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown open reading frame, human C22orf39; LOC102008776; UPF0545 protein C22orf39 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,570,867 - 18,576,076 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,570,867 - 18,575,809 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
CUNH22orf39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,570,867 - 18,576,076 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,570,867 - 18,575,809 (+)NCBIChiLan1.0ChiLan1.0
C22orf39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,440,886 - 19,447,711 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,351,368 - 19,447,711 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,428,409 - 19,435,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,810,894 - 17,815,220 (-)NCBINCBI36Build 36hg18NCBI36
Celera223,280,666 - 3,288,012 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef223,049,221 - 3,056,567 (-)NCBIHuRef
CHM1_12219,427,982 - 19,435,325 (-)NCBICHM1_1
T2T-CHM13v2.02219,817,716 - 19,824,539 (-)NCBIT2T-CHM13v2.0
2510002D24Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,655,263 - 18,658,910 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,655,328 - 18,658,910 (+)EnsemblGRCm39 Ensembl
GRCm381618,836,580 - 18,840,113 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,836,578 - 18,840,160 (+)EnsemblGRCm38mm10GRCm38
MGSCv371618,836,673 - 18,840,206 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361618,750,154 - 18,753,503 (+)NCBIMGSCv36mm8
Celera1619,410,637 - 19,414,170 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.67NCBI
C11h22orf39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81195,660,135 - 95,665,750 (-)NCBIGRCr8
mRatBN7.21182,155,992 - 82,160,235 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,159,528 - 82,160,235 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,885,310 - 90,889,571 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01183,546,530 - 83,550,791 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,599,798 - 82,604,059 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,299,210 - 86,303,453 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,299,210 - 86,303,453 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,401,176 - 89,405,419 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1180,936,482 - 80,940,725 (-)NCBICelera
Cytogenetic Map11q23NCBI
C23H22orf39
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22329,065,830 - 29,072,733 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,613,548 - 31,620,575 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,200,164 - 2,207,473 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12217,875,330 - 17,882,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2217,875,330 - 17,882,694 (-)Ensemblpanpan1.1panPan2
C26H22orf39
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12629,765,870 - 29,770,079 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,765,936 - 29,769,471 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2629,721,278 - 29,725,460 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,167,718 - 31,171,885 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,167,707 - 31,172,044 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,215,010 - 29,219,178 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02628,840,415 - 28,844,599 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02629,927,353 - 29,931,531 (+)NCBIUU_Cfam_GSD_1.0
CUNH22orf39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,360,729 - 139,365,635 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,388,427 - 3,393,253 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,388,427 - 3,393,299 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C14H22orf39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,106,991 - 51,112,359 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,106,984 - 51,112,385 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,674,018 - 54,679,446 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH22orf39
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,307,277 - 6,312,609 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,307,916 - 6,311,459 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666085618,793 - 626,347 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH22orf39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624747103,310 - 107,382 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624747101,938 - 109,335 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024765   ⟹   ENSCLAP00000024529
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544218,570,867 - 18,576,076 (+)Ensembl
RefSeq Acc Id: XM_005391778   ⟹   XP_005391835
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,570,867 - 18,575,809 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517637   ⟹   XP_013373091
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,570,867 - 18,575,809 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391835 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373091 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024529
  ENSCLAP00000024529.1
RefSeq Acc Id: XP_005391835   ⟸   XM_005391778
- Peptide Label: isoform X2
- UniProtKB: A0A8C2WA99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373091   ⟸   XM_013517637
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000024529   ⟸   ENSCLAT00000024765


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016842 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024765 ENTREZGENE
  ENSCLAT00000024765.1 UniProtKB/TrEMBL
InterPro DUF3128 UniProtKB/TrEMBL
NCBI Gene LOC102008776 ENTREZGENE
PANTHER PTHR28052 UniProtKB/TrEMBL
  UPF0545 PROTEIN C22ORF39 UniProtKB/TrEMBL
Pfam DUF3128 UniProtKB/TrEMBL
UniProt A0A8C2WA99 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-07-06 CUNH22orf39  chromosome unknown C22orf39 homolog  LOC102008776  chromosome unknown open reading frame, human C22orf39  Symbol and/or name change 5135510 APPROVED