CUNH22orf39 (chromosome unknown C22orf39 homolog) - Rat Genome Database

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Gene: CUNH22orf39 (chromosome unknown C22orf39 homolog) Chinchilla lanigera
Analyze
Symbol: CUNH22orf39 (Ensembl: C22orf39)
Name: chromosome unknown C22orf39 homolog (Ensembl:chromosome unknown open reading frame, human C22orf39)
RGD ID: 8787743
Description: INVOLVED IN negative regulation of long-term synaptic potentiation (ortholog); regulation of synaptic plasticity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN synapse (ortholog); synaptic cleft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown open reading frame, human C22orf39; LOC102008776; UPF0545 protein C22orf39 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,570,867 - 18,576,076 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,570,867 - 18,575,809 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
synapse  (ISO)
synaptic cleft  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
CUNH22orf39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,570,867 - 18,576,076 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,570,867 - 18,575,809 (+)NCBIChiLan1.0ChiLan1.0
C22orf39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,440,886 - 19,447,711 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,351,368 - 19,447,711 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,428,409 - 19,435,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,810,894 - 17,815,220 (-)NCBINCBI36Build 36hg18NCBI36
Celera223,280,666 - 3,288,012 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef223,049,221 - 3,056,567 (-)NCBIHuRef
CHM1_12219,427,982 - 19,435,325 (-)NCBICHM1_1
T2T-CHM13v2.02219,817,716 - 19,824,539 (-)NCBIT2T-CHM13v2.0
2510002D24Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,655,263 - 18,658,910 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,655,328 - 18,658,910 (+)EnsemblGRCm39 Ensembl
GRCm381618,836,580 - 18,840,113 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,836,578 - 18,840,160 (+)EnsemblGRCm38mm10GRCm38
MGSCv371618,836,673 - 18,840,206 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361618,750,154 - 18,753,503 (+)NCBIMGSCv36mm8
Celera1619,410,637 - 19,414,170 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.67NCBI
C11h22orf39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81195,660,135 - 95,665,750 (-)NCBIGRCr8
mRatBN7.21182,155,992 - 82,160,235 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,159,528 - 82,160,235 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,885,310 - 90,889,571 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01183,546,530 - 83,550,791 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,599,798 - 82,604,059 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,299,210 - 86,303,453 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,299,210 - 86,303,453 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,401,176 - 89,405,419 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1180,936,482 - 80,940,725 (-)NCBICelera
Cytogenetic Map11q23NCBI
C23H22orf39
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22329,065,830 - 29,072,733 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,613,548 - 31,620,575 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,200,164 - 2,207,473 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12217,875,330 - 17,882,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2217,875,330 - 17,882,694 (-)Ensemblpanpan1.1panPan2
C26H22orf39
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12629,765,870 - 29,770,079 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,765,936 - 29,769,471 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2629,721,278 - 29,725,460 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,167,718 - 31,171,885 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,167,707 - 31,172,044 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,215,010 - 29,219,178 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02628,840,415 - 28,844,599 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02629,927,353 - 29,931,531 (+)NCBIUU_Cfam_GSD_1.0
CUNH22orf39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,360,729 - 139,365,635 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,388,427 - 3,393,253 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,388,427 - 3,393,299 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C14H22orf39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,106,991 - 51,112,359 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,106,984 - 51,112,385 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,674,018 - 54,679,446 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH22orf39
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,307,277 - 6,312,609 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,307,916 - 6,311,459 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666085618,793 - 626,347 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH22orf39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624747103,310 - 107,382 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624747101,938 - 109,335 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000024765   ⟹   ENSCLAP00000024529
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544218,570,867 - 18,576,076 (+)Ensembl
RefSeq Acc Id: XM_005391778   ⟹   XP_005391835
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,570,867 - 18,575,809 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517637   ⟹   XP_013373091
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,570,867 - 18,575,809 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391835 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373091 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024529
  ENSCLAP00000024529.1
RefSeq Acc Id: XP_005391835   ⟸   XM_005391778
- Peptide Label: isoform X2
- UniProtKB: A0A8C2WA99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373091   ⟸   XM_013517637
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000024529   ⟸   ENSCLAT00000024765


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016842 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024765 ENTREZGENE
  ENSCLAT00000024765.1 UniProtKB/TrEMBL
InterPro DUF3128 UniProtKB/TrEMBL
NCBI Gene LOC102008776 ENTREZGENE
PANTHER PTHR28052 UniProtKB/TrEMBL
  UPF0545 PROTEIN C22ORF39 UniProtKB/TrEMBL
Pfam DUF3128 UniProtKB/TrEMBL
UniProt A0A8C2WA99 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-07-06 CUNH22orf39  chromosome unknown C22orf39 homolog  LOC102008776  chromosome unknown open reading frame, human C22orf39  Symbol and/or name change 5135510 APPROVED