Kbtbd3 (kelch repeat and BTB domain containing 3) - Rat Genome Database

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Pathways
Gene: Kbtbd3 (kelch repeat and BTB domain containing 3) Chinchilla lanigera
Analyze
Symbol: Kbtbd3
Name: kelch repeat and BTB domain containing 3
RGD ID: 8785449
Description: ASSOCIATED WITH ovarian serous cystadenocarcinoma (ortholog); pancreatic adenocarcinoma (ortholog); urinary bladder cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kelch repeat and BTB (POZ) domain containing 3; kelch repeat and BTB domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554128,703,075 - 8,713,929 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554128,703,075 - 8,723,628 (-)NCBIChiLan1.0ChiLan1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Kbtbd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554128,703,075 - 8,713,929 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554128,703,075 - 8,723,628 (-)NCBIChiLan1.0ChiLan1.0
KBTBD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811106,051,098 - 106,077,347 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11106,047,228 - 106,077,459 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh3711105,921,825 - 105,948,074 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611105,427,035 - 105,453,396 (-)NCBIBuild 36Build 36hg18NCBI36
Celera11103,086,081 - 103,112,731 (-)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11101,852,912 - 101,879,565 (-)NCBIHuRef
CHM1_111105,804,799 - 105,831,434 (-)NCBICHM1_1
T2T-CHM13v2.011106,055,698 - 106,081,959 (-)NCBIT2T-CHM13v2.0
Kbtbd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3994,309,743 - 4,331,829 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl94,309,715 - 4,332,756 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3894,309,743 - 4,331,829 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl94,309,833 - 4,331,732 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv3794,309,743 - 4,331,732 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3694,309,835 - 4,331,711 (+)NCBIMGSCv36mm8
Celera3118,371,675 - 118,393,631 (-)NCBICelera
Cytogenetic Map9A1NCBI
cM Map92.46NCBI
Kbtbd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr889,749,229 - 9,780,036 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl89,749,175 - 9,774,555 (+)EnsemblGRCr8
mRatBN7.281,464,162 - 1,491,144 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl81,473,247 - 1,487,943 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx85,460,724 - 5,475,419 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.083,758,459 - 3,773,154 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.081,704,609 - 1,719,304 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd89,725,490 - 9,756,250 (+)NCBI
Lyon_Normotensive811,953,434 - 11,984,192 (+)NCBI
Lyon_Hypertensive810,563,250 - 10,594,000 (+)NCBI
F344_StmMcwi81,862,874 - 1,893,633 (+)NCBI
Rnor_6.081,450,345 - 1,477,250 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl81,459,526 - 1,476,837 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.081,444,771 - 1,475,837 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48867,248 - 881,944 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera81,356,521 - 1,371,217 (+)NCBICelera
RGSC_v3.18867,416 - 881,706 (+)NCBI
Cytogenetic Map8q11NCBI
KBTBD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29106,799,342 - 106,825,681 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111107,893,916 - 107,920,243 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011100,938,438 - 100,969,353 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111104,426,554 - 104,453,162 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11104,426,554 - 104,453,162 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
KBTBD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1526,193,776 - 26,225,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl526,194,536 - 26,225,471 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha526,118,723 - 26,150,635 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0526,222,004 - 26,254,114 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl526,222,145 - 26,254,030 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1526,272,609 - 26,304,462 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0526,157,912 - 26,189,839 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0526,307,496 - 26,339,464 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Kbtbd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1490,452,900 - 90,476,991 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440494789,179,024 - 89,200,649 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365512,335,283 - 2,354,099 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365512,335,860 - 2,353,936 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KBTBD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl935,874,041 - 35,903,729 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1935,870,911 - 35,903,870 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2939,910,814 - 39,940,142 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KBTBD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11102,528,384 - 102,556,111 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366604328,408,260 - 28,435,514 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1197,451,496 - 97,475,592 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl197,449,724 - 97,475,364 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Kbtbd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624784843,934 - 869,184 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_004624784849,924 - 868,991 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl561,618,949 - 61,639,076 (+)Ensembl


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000021314   ⟹   ENSCLAP00000021113
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554128,703,075 - 8,713,929 (-)Ensembl
RefSeq Acc Id: XM_005378014   ⟹   XP_005378071
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554128,703,075 - 8,723,628 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378015   ⟹   XP_005378072
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554128,703,075 - 8,722,916 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378016   ⟹   XP_005378073
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554128,703,075 - 8,722,916 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378017   ⟹   XP_005378074
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554128,703,075 - 8,713,929 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378018   ⟹   XP_005378075
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554128,703,075 - 8,710,826 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378019   ⟹   XP_005378076
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554128,703,075 - 8,708,441 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511193   ⟹   XP_013366647
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554128,703,075 - 8,723,106 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511194   ⟹   XP_013366648
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554128,703,075 - 8,723,106 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511195   ⟹   XP_013366649
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554128,703,075 - 8,716,669 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511196   ⟹   XP_013366650
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554128,703,075 - 8,710,366 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005378071   ⟸   XM_005378014
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YT04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005378073   ⟸   XM_005378016
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YT04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005378072   ⟸   XM_005378015
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YT04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005378074   ⟸   XM_005378017
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YT04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005378075   ⟸   XM_005378018
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YT04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005378076   ⟸   XM_005378019
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YT04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366648   ⟸   XM_013511194
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YT04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366647   ⟸   XM_013511193
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YT04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366649   ⟸   XM_013511195
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YT04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366650   ⟸   XM_013511196
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YT04 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000021113   ⟸   ENSCLAT00000021314
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014468 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021314 ENTREZGENE
  ENSCLAT00000021314.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB-kelch_protein UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  KBTBD3 UniProtKB/TrEMBL
  KBTBD3_BACK UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene Kbtbd3 ENTREZGENE
PANTHER KELCH PROTEIN UniProtKB/TrEMBL
  PTHR24412:SF418 UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
PIRSF Kelch-like_protein_gigaxonin UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt A0A8C2YT04 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Kbtbd3  kelch repeat and BTB domain containing 3    kelch repeat and BTB (POZ) domain containing 3  Symbol and/or name change 5135510 APPROVED