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Gene: Kbtbd3 (kelch repeat and BTB domain containing 3) Ictidomys tridecemlineatus

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Symbol:

Kbtbd3

Name:

kelch repeat and BTB domain containing 3

RGD ID:

12493325

Description:

ASSOCIATED WITH ovarian serous cystadenocarcinoma (ortholog); pancreatic adenocarcinoma (ortholog); urinary bladder cancer (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

kelch repeat and BTB domain-containing protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mIctTri1.hap1 - mIctTri1.hap1 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	4	90,452,900 - 90,476,991 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024404947	89,179,024 - 89,200,649 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936551	2,335,283 - 2,354,099 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936551	2,335,860 - 2,353,936 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

ovarian serous cystadenocarcinoma (ISO)

pancreatic adenocarcinoma (ISO)

urinary bladder cancer (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Kbtbd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	4	90,452,900 - 90,476,991 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024404947	89,179,024 - 89,200,649 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936551	2,335,283 - 2,354,099 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936551	2,335,860 - 2,353,936 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KBTBD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	106,051,098 - 106,077,347 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	106,047,228 - 106,077,459 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	11	105,921,825 - 105,948,074 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	105,427,035 - 105,453,396 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	103,086,081 - 103,112,731 (-)	NCBI		Celera
Cytogenetic Map	11	q22.3	NCBI
HuRef	11	101,852,912 - 101,879,565 (-)	NCBI		HuRef
CHM1_1	11	105,804,799 - 105,831,434 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	106,055,698 - 106,081,959 (-)	NCBI		T2T-CHM13v2.0

Kbtbd3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	4,309,743 - 4,331,829 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	4,309,715 - 4,332,756 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	4,309,743 - 4,331,829 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	4,309,833 - 4,331,732 (+)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	9	4,309,743 - 4,331,732 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	4,309,835 - 4,331,711 (+)	NCBI		MGSCv36	mm8
Celera	3	118,371,675 - 118,393,631 (-)	NCBI		Celera
Cytogenetic Map	9	A1	NCBI
cM Map	9	2.46	NCBI

Kbtbd3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	9,749,229 - 9,780,036 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	9,749,175 - 9,774,555 (+)	Ensembl				GRCr8
mRatBN7.2	8	1,464,162 - 1,491,144 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	1,473,247 - 1,487,943 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	5,460,724 - 5,475,419 (+)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	3,758,459 - 3,773,154 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	1,704,609 - 1,719,304 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	8	9,725,490 - 9,756,250 (+)	NCBI
Lyon_Normotensive	8	11,953,434 - 11,984,192 (+)	NCBI
Lyon_Hypertensive	8	10,563,250 - 10,594,000 (+)	NCBI
F344_StmMcwi	8	1,862,874 - 1,893,633 (+)	NCBI
Rnor_6.0	8	1,450,345 - 1,477,250 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	1,459,526 - 1,476,837 (+)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	8	1,444,771 - 1,475,837 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	867,248 - 881,944 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	1,356,521 - 1,371,217 (+)	NCBI		Celera
RGSC_v3.1	8	867,416 - 881,706 (+)	NCBI
Cytogenetic Map	8	q11	NCBI

Kbtbd3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	8,703,075 - 8,713,929 (-)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955412	8,703,075 - 8,723,628 (-)	NCBI	ChiLan1.0	ChiLan1.0

KBTBD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	106,799,342 - 106,825,681 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	107,893,916 - 107,920,243 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	100,938,438 - 100,969,353 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	104,426,554 - 104,453,162 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	104,426,554 - 104,453,162 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

KBTBD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	26,193,776 - 26,225,701 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	26,194,536 - 26,225,471 (+)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	26,118,723 - 26,150,635 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	26,222,004 - 26,254,114 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	26,222,145 - 26,254,030 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	26,272,609 - 26,304,462 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	26,157,912 - 26,189,839 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	26,307,496 - 26,339,464 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

KBTBD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	35,874,041 - 35,903,729 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	9	35,870,911 - 35,903,870 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	39,910,814 - 39,940,142 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KBTBD3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	1	102,528,384 - 102,556,111 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666043	28,408,260 - 28,435,514 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	1	97,451,496 - 97,475,592 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	97,449,724 - 97,475,364 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Kbtbd3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624784	843,934 - 869,184 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624784	849,924 - 868,991 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl	5	61,618,949 - 61,639,076 (+)	Ensembl

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005329079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JBPVTT010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000001078 ⟹ ENSSTOP00000000962

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936551	2,335,283 - 2,354,099 (+)	Ensembl

RefSeq Acc Id:

XM_005329079 ⟹ XP_005329136

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	90,452,900 - 90,476,991 (-)	NCBI
HiC_Itri_2	NW_024404947	89,179,024 - 89,200,649 (-)	NCBI
SpeTri2.0	NW_004936551	2,335,860 - 2,353,936 (+)	NCBI

Sequence:

show sequence

CACCAACGACCTCTGCGCTTTGCGGCATCGTGTGACGTCACGTAGGCGTGACACCCGCGGGCGA
GCGAAGGGAGGGACCAAGGCCAAGAGCCCTACAGTTACGCCATTCACGCGTAGGGAAATACTAA
CCAGACAGCGGTGCAAGCCAATCGCAATCAGCGCTCTGGAAGCAGGGAGACTTGGGTGGAGACT
TCAGAGACTGCAGTTGCAGTTCCAAATATAGATGGAATTCACTATGGATAATTCATATGATTTC
AACATACGAAGCTCATGTAATGGAATTCCATCTGAGAAGAAAAACAACTTCCTTGTGTCTGAAG
ATCATGGACAGAAAATCTTAAGTATACTGCAGAATTTTAGAGAGCAAAATGTCTTTTATGATTT
CAAAATAATTATGAAAGATGAGATAATCCCATGTCATCGTTGTGTGTTAGCAGCGTGTAGTGAC
TTTTTCAGGGCTATGTTTGAAGTAAACATGAAAGAAAGAGATGATGGAAGTGTTACCATTACTA
ATTTGTCCTCCAAAGCAGTAAAAGCATTTCTTGATTATGCCTATACTGGAAAGACAAAAATTAC
AGATGATAATGTGGAAATGTTCTTCCAGTTGTCATCATTTCTTCAAGTTTCCTTCCTATCCAAA
GCTTGCAGTGACTTTTTAATAAAAAGCATTAATCTCGTCAATTGTTTACATTTATTATCTATAT
CAGATAGCTATGGTTCAACCCGTTTGTTTGATCATGCATTATACTTTGTACAACATCACTTTTC
TCTGTTATTTAAATCCAGTGATTTCTTAGAGATGAATTTTGGAATACTGCAAAAATGTCTGGAA
TCAGATGAATTAAATGTTCCTGAAGAAGAAACAGTACTGAAGGTCGTCCTTAATTGGACAAAAC
ATAACTTAGAATCAAGGCAAAAGCATCTGCCTCATTTGATTAAGAAAGTAAGATTACATCAGTT
ATCCGAGGACACACTTCAAGACTGTCTTCTCAATGAAGAGTGTTTACTCAAAAGCACAAACTGT
TTTGACATAATCGTGGATGCAATTAAATGTGTACAAGGTTCTAGTGGACTTTTCCCTGATGCTC
GACCATCCACAACTGAAAAATATATATTCATTCATAAAACTGAGGAAAATGGAGAAAATCAATA
TACATTTTGCTATAATATTAAAACTGACTCATGGAAAATATTACCACAATCACACCTGATTGAT
TTGCCAGGGTCTAGTCTGTCTAGCTATGGAGAGAAAATATTCTTGACTGGTGGTTGCAAAGGGA
AGTGTTGTAGAAAGGTTCGACTTCATATTGCTGAGTCTTACCATGATGCTACCGATCAAACCTG
GTGCTACTGCCCAGTCAAAAATGATTTCTTTTTGGTATCAAATATGAAGACACCAAGAACCATG
CATACATCAGTTATGGCTCTCAACAGATTATTTGTCATAGGTGGAAAGACTAGGGGATCTCAGG
ACATTAAAAGTCTCCTAGATGTTGAGTCATATGATCCTCTTTCTAAAGAATGGATATCTGTTAG
CCCATTACCTAGAGGCATATATTATCCAGAAGCAAGTGCATGCCAAAATGTAATTTATGTTCTT
GGATCAGAGGTAGAAATTACAGATGCCTTTAACCCATCACTTGATTGCTTTTTTAAATATAATG
CTACAACTGATCAGTGGTCTGAACTAGTAGCAGAGTTTGGGCAATTTTTTCATGCTACACTAAT
TAAAGCTGTCCCTGTAAATTGCACACTGTATATATGTGACCTTTCCACCTATAAGGTTTATAGT
TTTTGTCCAGATACTTGTGTTTGGAAGGGTGAAGGGTCTTTTGAATGTGCAGGTTTTAATGCAG
GTGCAATTGGAATTGAAGATAAGATTTATATATTAGGTGGTGATTATGCACCAGATGAAATCAC
AGATGAAGTACAAGTCTACCACAGCAGCAGGTCAGAGTGGGAAGAAGTTTCACCAATGCCAAGA
GCCTTAACTGAATTTTACTGCCAGGTGATTCAGTTCAATAAATACAGGGACCCATGGTTTTCTA
ATCATTTCTAAAAGAAGTATGTGCTTGGACATTCTGAAGCTACTCCATTCTTGTAACATGGTAA
ATCTGTTTGCCATAATGATTGGTAGAAAGGTCTTTACATCTTACTAAAATAAAATGTTCCTTCT
ATTACATGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005329136	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000962.2
	ENSSTOP00015008978

RefSeq Acc Id:

XP_005329136 ⟸ XM_005329079

- UniProtKB:

I3LXX6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEFTMDNSYDFNIRSSCNGIPSEKKNNFLVSEDHGQKILSILQNFREQNVFYDFKIIMKDEIIP
CHRCVLAACSDFFRAMFEVNMKERDDGSVTITNLSSKAVKAFLDYAYTGKTKITDDNVEMFFQL
SSFLQVSFLSKACSDFLIKSINLVNCLHLLSISDSYGSTRLFDHALYFVQHHFSLLFKSSDFLE
MNFGILQKCLESDELNVPEEETVLKVVLNWTKHNLESRQKHLPHLIKKVRLHQLSEDTLQDCLL
NEECLLKSTNCFDIIVDAIKCVQGSSGLFPDARPSTTEKYIFIHKTEENGENQYTFCYNIKTDS
WKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGKCCRKVRLHIAESYHDATDQTWCYCPVKNDFF
LVSNMKTPRTMHTSVMALNRLFVIGGKTRGSQDIKSLLDVESYDPLSKEWISVSPLPRGIYYPE
ASACQNVIYVLGSEVEITDAFNPSLDCFFKYNATTDQWSELVAEFGQFFHATLIKAVPVNCTLY
ICDLSTYKVYSFCPDTCVWKGEGSFECAGFNAGAIGIEDKIYILGGDYAPDEITDEVQVYHSSR
SEWEEVSPMPRALTEFYCQVIQFNKYRDPWFSNHF

hide sequence

Ensembl Acc Id:

ENSSTOP00000000962 ⟸ ENSSTOT00000001078

Protein Domains

BTB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001079	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00015007341	ENTREZGENE
Ensembl Transcript	ENSSTOT00000001078.3	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.420	UniProtKB/TrEMBL
	2.120.10.80	UniProtKB/TrEMBL
	Potassium Channel Kv1.1, Chain A	UniProtKB/TrEMBL
InterPro	BACK	UniProtKB/TrEMBL
	BTB-kelch_protein	UniProtKB/TrEMBL
	BTB/POZ_dom	UniProtKB/TrEMBL
	KBTBD3	UniProtKB/TrEMBL
	KBTBD3_BACK	UniProtKB/TrEMBL
	Kelch-typ_b-propeller	UniProtKB/TrEMBL
	Kelch_1	UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/TrEMBL
NCBI Gene	Kbtbd3	ENTREZGENE
PANTHER	KELCH PROTEIN	UniProtKB/TrEMBL
	PTHR24412:SF418	UniProtKB/TrEMBL
Pfam	BACK	UniProtKB/TrEMBL
	BTB	UniProtKB/TrEMBL
	Kelch_1	UniProtKB/TrEMBL
PIRSF	Kelch-like_protein_gigaxonin	UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/TrEMBL
SMART	BACK	UniProtKB/TrEMBL
	BTB	UniProtKB/TrEMBL
	Kelch	UniProtKB/TrEMBL
Superfamily-SCOP	SSF117281	UniProtKB/TrEMBL
	SSF54695	UniProtKB/TrEMBL
UniProt	I3LXX6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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