Thnsl1 (threonine synthase like 1) - Rat Genome Database

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Gene: Thnsl1 (threonine synthase like 1) Chinchilla lanigera
Analyze
Symbol: Thnsl1
Name: threonine synthase like 1
RGD ID: 8779107
Description: FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: threonine synthase-like 1; threonine synthase-like 1 (S. cerevisiae)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554294,169,176 - 4,182,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554294,169,170 - 4,208,097 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Thnsl1Chinchillamitochondrion located_inISORGD:13437469068941 PMID:34800366FlyBasePMID:34800366


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:30032202  



Thnsl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554294,169,176 - 4,182,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554294,169,170 - 4,208,097 (-)NCBIChiLan1.0ChiLan1.0
THNSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381024,952,364 - 25,026,664 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1025,016,612 - 25,026,664 (+)EnsemblGRCh38hg38GRCh38
GRCh371025,305,541 - 25,315,593 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361025,345,514 - 25,355,599 (+)NCBINCBI36Build 36hg18NCBI36
Build 341025,345,592 - 25,354,458NCBI
Celera1025,006,921 - 25,017,017 (+)NCBICelera
Cytogenetic Map10p12.1NCBI
HuRef1024,966,375 - 24,976,469 (+)NCBIHuRef
CHM1_11025,306,027 - 25,316,112 (+)NCBICHM1_1
T2T-CHM13v2.01024,970,612 - 25,044,892 (+)NCBIT2T-CHM13v2.0
Thnsl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39221,210,236 - 21,232,948 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl221,210,535 - 21,219,820 (+)EnsemblGRCm39 Ensembl
GRCm38221,205,425 - 21,228,134 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl221,205,724 - 21,215,009 (+)EnsemblGRCm38mm10GRCm38
MGSCv37221,127,351 - 21,136,636 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36221,123,478 - 21,132,763 (+)NCBIMGSCv36mm8
Celera221,087,094 - 21,096,380 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map214.83NCBI
Thnsl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81788,623,054 - 88,630,681 (+)NCBIGRCr8
mRatBN7.21783,714,794 - 83,722,190 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1783,714,738 - 83,723,805 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1787,187,359 - 87,193,796 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01791,022,733 - 91,029,170 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01785,039,667 - 85,046,104 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01788,095,830 - 88,102,264 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1788,095,830 - 88,102,262 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01789,783,177 - 89,789,611 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41795,202,232 - 95,208,666 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1782,967,475 - 82,973,909 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
THNSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2837,650,135 - 37,724,250 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11037,655,658 - 37,730,721 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01025,132,173 - 25,201,044 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11025,506,170 - 25,571,121 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1025,567,676 - 25,569,907 (+)Ensemblpanpan1.1panPan2
THNSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.128,482,955 - 8,497,217 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl28,478,879 - 8,489,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha27,177,848 - 7,191,817 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.026,682,462 - 6,696,434 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl26,683,894 - 6,696,627 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.126,052,391 - 6,066,359 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.026,130,496 - 6,144,461 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.026,297,195 - 6,311,168 (-)NCBIUU_Cfam_GSD_1.0
Thnsl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934424,515,502 - 24,544,460 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936484701,152 - 708,824 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936484680,737 - 709,617 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THNSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1050,286,747 - 50,310,591 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11050,298,549 - 50,310,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21055,701,262 - 55,705,773 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THNSL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1924,740,323 - 24,749,512 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl924,747,218 - 24,749,449 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605130,701,208 - 30,710,211 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thnsl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247963,952,916 - 3,960,901 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSCLAT00000019071   ⟹   ENSCLAP00000018886
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554294,169,176 - 4,182,088 (-)Ensembl
RefSeq Acc Id: XM_005386902   ⟹   XP_005386959
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554294,169,170 - 4,182,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005386903   ⟹   XP_005386960
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554294,169,170 - 4,182,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005386904   ⟹   XP_005386961
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554294,169,170 - 4,182,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515491   ⟹   XP_013370945
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554294,169,170 - 4,208,097 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515492   ⟹   XP_013370946
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554294,169,170 - 4,182,452 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515493   ⟹   XP_013370947
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554294,169,170 - 4,182,088 (-)NCBI
Sequence:
Protein RefSeqs XP_005386959 (Get FASTA)   NCBI Sequence Viewer  
  XP_005386960 (Get FASTA)   NCBI Sequence Viewer  
  XP_005386961 (Get FASTA)   NCBI Sequence Viewer  
  XP_013370945 (Get FASTA)   NCBI Sequence Viewer  
  XP_013370946 (Get FASTA)   NCBI Sequence Viewer  
  XP_013370947 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018886.1
RefSeq Acc Id: XP_005386960   ⟸   XM_005386903
- UniProtKB: A0A8C2VU38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005386959   ⟸   XM_005386902
- UniProtKB: A0A8C2VU38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005386961   ⟸   XM_005386904
- UniProtKB: A0A8C2VU38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370945   ⟸   XM_013515491
- UniProtKB: A0A8C2VU38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370946   ⟸   XM_013515492
- UniProtKB: A0A8C2VU38 (UniProtKB/TrEMBL)
- Sequence:
Threonine synthase N-terminal



1 to 21 of 21 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000012933 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019071.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1100 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  3.90.1380.10 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Shikimate/glucono_kinase UniProtKB/TrEMBL
  Shikimate_kinase/TSH1 UniProtKB/TrEMBL
  Thr_synth_N UniProtKB/TrEMBL
  Thr_synth_N_sf UniProtKB/TrEMBL
  Thr_synthase-like UniProtKB/TrEMBL
  Trypto_synt_PLP_dependent UniProtKB/TrEMBL
NCBI Gene Thnsl1 ENTREZGENE
PANTHER THREONINE SYNTHASE-LIKE 1 UniProtKB/TrEMBL
  THREONINE SYNTHASE-LIKE 1 UniProtKB/TrEMBL
Pfam SKI UniProtKB/TrEMBL
  Thr_synth_N UniProtKB/TrEMBL
PRINTS SHIKIMTKNASE UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF53686 UniProtKB/TrEMBL
UniProt A0A8C2VU38 ENTREZGENE, UniProtKB/TrEMBL
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Thnsl1  threonine synthase like 1    threonine synthase-like 1 (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED