Tcp11l2 (t-complex 11 like 2) - Rat Genome Database

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Gene: Tcp11l2 (t-complex 11 like 2) Chinchilla lanigera
Analyze
Symbol: Tcp11l2
Name: t-complex 11 like 2
RGD ID: 8767982
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: t-complex 11, testis-specific-like 2; T-complex protein 11-like protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540540,312,246 - 40,345,201 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540540,312,128 - 40,345,224 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tcp11l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540540,312,246 - 40,345,201 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540540,312,128 - 40,345,224 (+)NCBIChiLan1.0ChiLan1.0
TCP11L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812106,297,935 - 106,347,003 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12106,301,929 - 106,347,538 (+)EnsemblGRCh38hg38GRCh38
GRCh3712106,696,511 - 106,740,781 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612105,220,711 - 105,264,923 (+)NCBINCBI36Build 36hg18NCBI36
Celera12106,362,190 - 106,406,396 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12103,756,893 - 103,801,111 (+)NCBIHuRef
CHM1_112106,662,401 - 106,706,615 (+)NCBICHM1_1
T2T-CHM13v2.012106,265,162 - 106,310,306 (+)NCBIT2T-CHM13v2.0
Tcp11l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391084,412,811 - 84,450,219 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1084,412,490 - 84,450,223 (+)EnsemblGRCm39 Ensembl
GRCm381084,576,947 - 84,614,355 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1084,576,626 - 84,614,359 (+)EnsemblGRCm38mm10GRCm38
MGSCv371084,039,692 - 84,077,100 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361084,006,746 - 84,044,154 (+)NCBIMGSCv36mm8
Celera1086,555,865 - 86,593,264 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.55NCBI
Tcp11l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8721,037,955 - 21,072,857 (-)NCBIGRCr8
mRatBN7.2719,150,241 - 19,185,135 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl719,150,252 - 19,185,095 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx721,111,235 - 21,137,923 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0723,273,912 - 23,300,596 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0723,050,883 - 23,077,567 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0724,859,048 - 24,893,907 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl724,859,050 - 24,885,775 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0725,004,995 - 25,039,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4721,279,423 - 21,306,149 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1721,299,696 - 21,326,420 (-)NCBI
Celera716,359,463 - 16,386,188 (-)NCBICelera
Cytogenetic Map7q13NCBI
TCP11L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210114,370,041 - 114,416,610 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112114,366,438 - 114,412,198 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012103,881,493 - 103,926,341 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112107,276,622 - 107,320,326 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12107,276,622 - 107,320,326 (+)Ensemblpanpan1.1panPan2
TCP11L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11032,317,178 - 32,354,754 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1032,318,964 - 32,347,071 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1032,237,133 - 32,275,634 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01033,158,132 - 33,196,697 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1033,158,134 - 33,196,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11032,894,060 - 32,932,635 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01033,182,851 - 33,221,389 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01033,370,405 - 33,409,008 (-)NCBIUU_Cfam_GSD_1.0
Tcp11l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494515,537,993 - 15,577,045 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364928,548,403 - 8,587,502 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364928,548,407 - 8,587,465 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCP11L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl513,934,170 - 13,982,999 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1513,934,164 - 13,987,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2514,169,991 - 14,204,442 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TCP11L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111101,523,853 - 101,566,039 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11101,528,405 - 101,568,505 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037143,472,545 - 143,514,840 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcp11l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247503,010,243 - 3,040,658 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247503,010,707 - 3,045,000 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000015430   ⟹   ENSCLAP00000015270
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540540,312,246 - 40,345,201 (+)Ensembl
RefSeq Acc Id: XM_005374617   ⟹   XP_005374674
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540540,312,246 - 40,345,224 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374618   ⟹   XP_005374675
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540540,312,128 - 40,345,224 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374674 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374675 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015270
  ENSCLAP00000015270.1
RefSeq Acc Id: XP_005374675   ⟸   XM_005374618
- UniProtKB: A0A8C2VKD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374674   ⟸   XM_005374617
- UniProtKB: A0A8C2VKD9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000015270   ⟸   ENSCLAT00000015430


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010514 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015430 ENTREZGENE
  ENSCLAT00000015430.1 UniProtKB/TrEMBL
InterPro Tcp11 UniProtKB/TrEMBL
NCBI Gene Tcp11l2 ENTREZGENE
PANTHER PTHR12832 UniProtKB/TrEMBL
  T-COMPLEX PROTEIN 11-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam Tcp11 UniProtKB/TrEMBL
UniProt A0A8C2VKD9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Tcp11l2  t-complex 11 like 2    t-complex 11, testis-specific-like 2  Symbol and/or name change 5135510 APPROVED