CUNH2orf74 (chromosome unknown C2orf74 homolog)

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Gene: CUNH2orf74 (chromosome unknown C2orf74 homolog) Chinchilla lanigera

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Symbol:

CUNH2orf74

Name:

chromosome unknown C2orf74 homolog

RGD ID:

8767494

Description:

ASSOCIATED WITH peroxisome biogenesis disorder 11A (ortholog); visceral heterotaxy (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chromosome unknown open reading frame, human C2orf74; LOC102024590; uncharacterized protein C2orf74 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955424	22,709,676 - 22,712,178 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

peroxisome biogenesis disorder 11A (ISO)

visceral heterotaxy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

CUNH2orf74
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955424	22,709,676 - 22,712,178 (-)	NCBI	ChiLan1.0	ChiLan1.0

C2orf74
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	61,145,116 - 61,164,828 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	61,145,068 - 61,164,828 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	61,372,251 - 61,391,963 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	61,225,792 - 61,245,468 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	61,215,846 - 61,236,014 (+)	NCBI		Celera
Cytogenetic Map	2	p15	NCBI
HuRef	2	61,113,262 - 61,133,063 (+)	NCBI		HuRef
CHM1_1	2	61,302,780 - 61,322,493 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	61,150,976 - 61,170,676 (+)	NCBI		T2T-CHM13v2.0

1700093K21Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	23,466,203 - 23,471,915 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	23,466,203 - 23,471,155 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	23,516,202 - 23,521,319 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	23,516,203 - 23,521,155 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	23,416,203 - 23,419,942 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	23,416,203 - 23,419,195 (-)	NCBI		MGSCv36	mm8
Celera	11	25,643,964 - 25,647,707 (-)	NCBI		Celera
Cytogenetic Map	11	A3.2	NCBI
cM Map	11	14.32	NCBI

C14h2orf74
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	101,694,721 - 101,697,842 (-)	NCBI		GRCr8
mRatBN7.2	14	97,493,579 - 97,496,697 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	97,493,658 - 97,496,679 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	101,825,814 - 101,828,841 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	103,070,175 - 103,073,202 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	99,541,741 - 99,544,768 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	108,281,908 - 108,285,008 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	108,281,907 - 108,285,008 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	105,117,765 - 105,120,865 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	104,443,532 - 104,446,553 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	96,470,624 - 96,473,645 (-)	NCBI		Celera
Cytogenetic Map	14	q22	NCBI

C12H2orf74
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	65,212,265 - 65,232,116 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	65,216,227 - 65,236,067 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	61,236,580 - 61,256,389 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	62,377,116 - 62,395,225 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	62,392,633 - 62,395,225 (+)	Ensembl	panpan1.1		panPan2

C10H2orf74
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	61,199,711 - 61,231,862 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	61,229,922 - 61,231,834 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	61,089,577 - 61,121,728 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	62,208,401 - 62,240,704 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	62,238,753 - 62,240,667 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	61,911,317 - 61,943,472 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	62,195,570 - 62,228,168 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	62,491,291 - 62,523,461 (+)	NCBI		UU_Cfam_GSD_1.0

CUNH2orf74
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	21,913,425 - 21,917,216 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	6,654,380 - 6,657,560 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	6,654,389 - 6,657,560 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C3H2orf74
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	80,626,159 - 80,648,230 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	80,626,056 - 80,651,084 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	84,514,795 - 84,517,948 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNH2orf74
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	45,819,831 - 45,824,090 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	45,820,129 - 45,822,162 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	65,963,324 - 65,981,598 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH2orf74
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624833	746,124 - 749,415 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624833	746,419 - 748,845 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013514609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013514610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001234161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01024981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01045251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013514609 ⟹ XP_013370063

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955424	22,709,676 - 22,712,173 (-)	NCBI

Sequence:

show sequence

CAGATAGGAAAGGAAGGATGCTGCCCAAAAGTAGAAAGAAAATCCTTCTCCAAAACATGGTGGA
GACACTGGCCTCCACTCTGGACCTTTCAGTAGGCAGAATGGATGCACAGCAGCCAGGGGAGCAA
TGCGTGGTCTCCTTGCCTCCCGGGAATGGTCTCAGAGTTCCAGACCTCTGTGATGTCACTGGAG
AGAGGGAAGTGGGCTCCCGCTGCTCCCACCCCCTTCTCCTCTGGATTTCTGCCGCTTTTGAGTT
TCCAAGACAAAAAAGACGACTGGGCAGAAAGAAGTCCTTGCACAGATGCTAATGGAGATGAAGA
CTGCTCACCTTCGCCTGAGGAAGAGGAGATGAACGGTGCGGGAGACCAGGAAAAGACCCCAGTG
CCAATCGTGGACTCCAGTGCACCCGTGAGGCCTGGCATTCTCGTCCAGAGACAGAACAGGGAAG
CGGTAACACCCTTAGGAAACAGAAAGGAGGAGGAGGCAGAGGAAGAGGACAAAATGAAAGACAG
GCAAAAGCCTGCGGGTGCCGGAGGAATGAATGAAAAGGGTAAAAATTTGCAGGAAACTTCAGTC
AGCGAAAGCCAAAAAAGACCTTTAAAAGGAGTGACATTTTCTAAGGAGGTAATTGTTGTGGATC
TTGGGGATGAACACCCTGCACCTCAAAGATACGCTCGAAAACATAAAGAGAGAAAAAGAAGCCA
AAAGAAGAATAAGACAAAAGAAAATGTAACCGTTGAGTAACAGTGGAAGGACAGGATACCAAGT
CATGTTGAAACAGCAAAATACAGTAACAGAAATGCAGGTGCTTTGGACAGAAGCAAGTGTACCG
CATGCAGAGCTTTATAAGTGAAATACTTAGCGCTTGAATATAGTTTTTAAAAACTGAAATCTGA
GTTCAATGAATTGTAATACTTTGCCTACTCACTGTCCAAACATGTAAATAAAGTTTTTTTATTT
TAGTGCA

hide sequence

RefSeq Acc Id:

XM_013514610 ⟹ XP_013370064

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955424	22,709,676 - 22,711,672 (-)	NCBI

Sequence:

show sequence

CTCCGAGGAGGGACATGTCCTTAGAAGCCAACCCTCCGGGCCTGGAAACCACCACAGTCACTTT
CTTCGTCCTCCTCCTAATCTGCTTCATTTTCATCTTCCTTTTATTGGTGTTTTTTTTATATAAA
TGTTTCCAAGACAAAAAAGACGACTGGGCAGAAAGAAGTCCTTGCACAGATGCTAATGGAGATG
AAGACTGCTCACCTTCGCCTGAGGAAGAGGAGATGAACGGTGCGGGAGACCAGGAAAAGACCCC
AGTGCCAATCGTGGACTCCAGTGCACCCGTGAGGCCTGGCATTCTCGTCCAGAGACAGAACAGG
GAAGCGGTAACACCCTTAGGAAACAGAAAGGAGGAGGAGGCAGAGGAAGAGGACAAAATGAAAG
ACAGGCAAAAGCCTGCGGGTGCCGGAGGAATGAATGAAAAGGGTAAAAATTTGCAGGAAACTTC
AGTCAGCGAAAGCCAAAAAAGACCTTTAAAAGGAGTGACATTTTCTAAGGAGGTAATTGTTGTG
GATCTTGGGGATGAACACCCTGCACCTCAAAGATACGCTCGAAAACATAAAGAGAGAAAAAGAA
GCCAAAAGAAGAATAAGACAAAAGAAAATGTAACCGTTGAGTAACAGTGGAAGGACAGGATACC
AAGTCATGTTGAAACAGCAAAATACAGTAACAGAAATGCAGGTGCTTTGGACAGAAGCAAGTGT
ACCGCATGCAGAGCTTTATAAGTGAAATACTTAGCGCTTGAATATAGTTTTTAAAAACTGAAAT
CTGAGTTCAATGAATTGTAATACTTTGCCTACTCACTGTCCAAACATGTAAATAAAGTTTTTTT
ATTTTAGTGCA

hide sequence

RefSeq Acc Id:

XR_001234161

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955424	22,709,676 - 22,712,178 (-)	NCBI

Sequence:

show sequence

AGACTCAGATAGGAAAGGAAGGATGCTGCCCAAAAGTAGAAAGAAAATCCTTCTCCAAAACATG
GTGGAGACACTGGCCTCCACTCTGGACCTTTCAGTAGGCAGAATGGATGCACAGCAGCCAGGGG
AGCAATGCGTGGTCTCCTTGCCTCCCGGGAATGGTCTCAGAGTTCCAGACCTCTGTGATGTCAC
TGGAGAGAGGGAAGTGGGCTCCCGCTGCTCCCACCCCCTTCTCCTCTGGATTTCTGCCGCTTTT
GAGGTGAGGGGAGGTGACCTGAGCGACCACCGAGGCCCAGCTCTGTCTCCCCTCCGGCCACCTC
AGCCCCCACCGCATGCATGGAGAGAAGTTAGTGGGTAAAGCGCACAGAAGTGAACTAGCTTCCA
ACGGAGCTGGAAACGACGGCCTGCACAGTCTCCGAGGAGGGACATGTCCTTAGAAGCCAACCCT
CCGGGCCTGGAAACCACCACAGTCACTTTCTTCGTCCTCCTCCTAATCTGCTTCATTTTCATCT
TCCTTTTATTGGTGTTTTTTTTATATAAATGTTTCCAAGACAAAAAAGACGACTGGGCAGAAAG
AAGTCCTTGCACAGATGCTAATGGAGATGAAGACTGCTCACCTTCGCCTGAGGAAGAGGAGATG
AACGGACCCCAGTGCCAATCGTGGACTCCAGTGCACCCGTGAGGCCTGGCATTCTCGTCCAGAG
ACAGAACAGGGAAGCGGTAACACCCTTAGGAAACAGAAAGGAGGAGGAGGCAGAGGAAGAGGAC
AAAATGAAAGACAGGCAAAAGCCTGCGGGTGCCGGAGGAATGAATGAAAAGGGTAAAAATTTGC
AGGAAACTTCAGTCAGCGAAAGCCAAAAAAGACCTTTAAAAGGAGTGACATTTTCTAAGGAGGT
AATTGTTGTGGATCTTGGGGATGAACACCCTGCACCTCAAAGATACGCTCGAAAACATAAAGAG
AGAAAAAGAAGCCAAAAGAAGAATAAGACAAAAGAAAATGTAACCGTTGAGTAACAGTGGAAGG
ACAGGATACCAAGTCATGTTGAAACAGCAAAATACAGTAACAGAAATGCAGGTGCTTTGGACAG
AAGCAAGTGTACCGCATGCAGAGCTTTATAAGTGAAATACTTAGCGCTTGAATATAGTTTTTAA
AAACTGAAATCTGAGTTCAATGAATTGTAATACTTTGCCTACTCACTGTCCAAACATGTAAATA
AAGTTTTTTTATTTTAGTGCA

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Protein Sequences


Protein RefSeqs	XP_013370063	(Get FASTA)	NCBI Sequence Viewer
	XP_013370064	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013370063 ⟸ XM_013514609

- Peptide Label:

isoform X1

- Sequence:

show sequence

MHSSQGSNAWSPCLPGMVSEFQTSVMSLERGKWAPAAPTPFSSGFLPLLSFQDKKDDWAERSPC
TDANGDEDCSPSPEEEEMNGAGDQEKTPVPIVDSSAPVRPGILVQRQNREAVTPLGNRKEEEAE
EEDKMKDRQKPAGAGGMNEKGKNLQETSVSESQKRPLKGVTFSKEVIVVDLGDEHPAPQRYARK
HKERKRSQKKNKTKENVTVE

hide sequence

RefSeq Acc Id:

XP_013370064 ⟸ XM_013514610

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSLEANPPGLETTTVTFFVLLLICFIFIFLLLVFFLYKCFQDKKDDWAERSPCTDANGDEDCSP
SPEEEEMNGAGDQEKTPVPIVDSSAPVRPGILVQRQNREAVTPLGNRKEEEAEEEDKMKDRQKP
AGAGGMNEKGKNLQETSVSESQKRPLKGVTFSKEVIVVDLGDEHPAPQRYARKHKERKRSQKKN
KTKENVTVE

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC102024590	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-07-06	CUNH2orf74	chromosome unknown C2orf74 homolog	LOC102024590	chromosome unknown open reading frame, human C2orf74	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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