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Gene: Prpf18 (pre-mRNA processing factor 18) Chinchilla lanigera

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Symbol:

Prpf18

Name:

pre-mRNA processing factor 18

RGD ID:

8766878

Description:

INVOLVED IN negative regulation of protein metabolic process (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH CORPUS CALLOSUM, AGENESIS OF, WITH FACIAL ANOMALIES AND CEREBELLAR ATAXIA (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

pre-mRNA-splicing factor 18

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	20,581,457 - 20,613,257 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	20,581,457 - 20,613,258 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CORPUS CALLOSUM, AGENESIS OF, WITH FACIAL ANOMALIES AND CEREBELLAR ATAXIA (ISO)

hypoparathyroidism-deafness-renal disease syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of protein metabolic process (ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Prpf18
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	20,581,457 - 20,613,257 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	20,581,457 - 20,613,258 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRPF18
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	13,586,965 - 13,655,929 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	13,586,939 - 13,668,445 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	13,628,965 - 13,697,929 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	13,668,945 - 13,712,874 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	13,669,020 - 13,712,728	NCBI
Celera	10	13,556,054 - 13,599,997 (+)	NCBI		Celera
Cytogenetic Map	10	p13	NCBI
HuRef	10	13,540,560 - 13,584,503 (+)	NCBI		HuRef
CHM1_1	10	13,629,694 - 13,673,671 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	13,599,966 - 13,668,950 (+)	NCBI		T2T-CHM13v2.0

Prpf18
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	4,626,869 - 4,656,946 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	4,626,869 - 4,656,924 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	4,622,058 - 4,652,135 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	4,622,058 - 4,652,113 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	4,543,213 - 4,573,132 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	4,539,439 - 4,569,358 (-)	NCBI		MGSCv36	mm8
Celera	2	4,574,753 - 4,604,661 (-)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI
cM Map	2	2.79	NCBI

Prpf18
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	78,539,004 - 78,570,483 (+)	NCBI		GRCr8
mRatBN7.2	17	73,630,560 - 73,661,210 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	73,630,571 - 73,690,979 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	77,123,582 - 77,154,138 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	80,959,480 - 80,990,038 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	75,007,036 - 75,037,592 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	77,601,914 - 77,632,507 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	77,601,877 - 77,663,980 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	79,256,708 - 79,287,301 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	84,741,279 - 84,773,449 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	73,067,705 - 73,098,132 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

PRPF18
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	26,106,223 - 26,175,189 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	26,111,563 - 26,155,440 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	13,584,517 - 13,628,389 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	13,915,987 - 13,959,812 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	13,915,943 - 13,959,830 (+)	Ensembl	panpan1.1		panPan2

PRPF18
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	22,868,184 - 22,922,647 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	19,927,607 - 19,981,026 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	23,174,819 - 23,228,055 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	23,174,827 - 23,228,046 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	20,374,375 - 20,427,960 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	21,209,121 - 21,262,690 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	21,837,171 - 21,891,059 (-)	NCBI		UU_Cfam_GSD_1.0

Prpf18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	5,813,918 - 5,850,819 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936613	364,462 - 401,402 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936613	364,492 - 401,402 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRPF18
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	48,061,728 - 48,164,499 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	48,062,229 - 48,122,222 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	52,848,767 - 52,884,941 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRPF18
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	13,606,432 - 13,650,727 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	13,606,433 - 13,652,849 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	19,142,305 - 19,186,776 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prpf18
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624805	1,602,782 - 1,637,099 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624805	1,593,697 - 1,635,987 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005387160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013515516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01028986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01209489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000017311 ⟹ ENSCLAP00000017142

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955429	20,581,457 - 20,613,257 (-)	Ensembl

Ensembl Acc Id:

ENSCLAT00000017312 ⟹ ENSCLAP00000017143

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955429	20,583,529 - 20,613,113 (-)	Ensembl

RefSeq Acc Id:

XM_005387160 ⟹ XP_005387217

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955429	20,581,457 - 20,613,257 (-)	NCBI

Sequence:

show sequence

CCTTGGCTTCCGCCGGAAGTGCCGCCATGTTGTTGCTGGCCTCGGGTGTTTGTGGGCGGCCGTG
GGCTGGCGGCCGTGTCTGGGTGAGGGGAGCAGCAGTTCCGAGGAGCCGGCCAGGGGGCGCAGGC
CACGTCCGGACCCGAGATGGACGTTCTGAAGTCCGAGATTCTCCGGAAGCGGCAGCTGGTGGAG
GACAGGAACCTGCTGGTGGAAAATAAAAAATATTTCAAACGTAGTGAACTTGCAAAAAAAGAAG
AGGAAGCATATTTTGAAAGATGTGGCTATAAGATGCCACCTAAAGAAGAGGACCAGAAACCACT
AACTTCATCAAATCCAGTATTAGAACTTGAACTGGCGGAAGAAAAATTACCCATGACTCTCTCC
AGGCAAGAGGTAATCAGAAGATTGAGGGAAAGAGGAGAGCCGATTAGACTGTTCGGCGAAACTG
ATTATGATGCTTTTCAGCGATTAAGAAAAATAGAAATCCTCACACCAGAAGTCAACAAGGGCTT
GAGGAATGACCTAAAAGCGGCTTTGGATAAGATTGATCAGCAGTACCTCAATGAAATTGTGGGT
GGTCAGGAACCTGGAGAGGAAGACACTCAGAATGATTTGAAAGTGCACGAAGAAAACACCACAA
TTGAGGAGTTAGAGGCCTTAGGAGAGTCTTTAGGAAAGGGCGATGATCATAAGGACATGGACAT
CATCACCAAATTCCTGAAGTTTTTGCTTGGTGTTTGGGCTAAAGAATTGAACGCCAGAGAAGAT
TACGTGAAACGCAGTGTGCAGGGTAAGCTGAACAGTGCCACGCAGAAGCAGACCGAGTCCTATC
TCAGACCACTTTTCAGAAAGCTCCGTAAAAGGAATCTTCCTGCTGATATTAAAGAATCAATAAC
AGATATTATTAAATTCATGTTGCAGAGAGAATATGTGAAGGCAAATGATGCTTACCTTCAGATG
GCCATTGGAAATGCTCCCTGGCCTATTGGCGTCACCATGGTTGGTATCCATGCTAGAACTGGCA
GGGAAAAGATTTTTTCCAAGCACGTTGCGCATGTATTAAACGATGAAACTCAGCGGAAATATAT
TCAGGGGCTGAAGAGGTTAATGACCATTTGCCAGAAGCACTTTCCCACAGACCCATCAAAGTGT
GTGGAGTACAATGCCCTGTGAGGTCCACACGCAGCAAGCAAGAACCATGCGGAACTTCAGCACG
CAGTGCGCAGACTTCTGTCATCACCAGCGGGAATGAGGACGGAGAGAGCTGGAGCTTCCGGTCT
CCGGATTCACTGCGGAGCTATGGTGGCTGTCACCTCTGACACTGATTTCTGTGTCTTGCTTTCA
TTTTAAATCATGAAAACTTACATTCTGAAGGCTTTCCCACAGCTACGTATGCAGACAGCAGTAA
CAGATGCGAATTTAAAGTGACTGACTAAAAGCTGGTGATTAGATAATTAAAAGGAAACTTTGGA
GGGTGCACCTAATTTTTCTGTGATTTGTACACAGTCTTCTATGTATTATTTATAGAAAATATTT
TTGCATATTTCAACAAAAATGGGGCCATTGAATGAGACTTGATCTTTGGCATTGTGCAGCATAA
TGAAATGTAAATGCGGTAGTGTTAGCTTAAGTGTTATTTTTCTTTTGTTTCAAAGCTTCCTTTA
TCTTCAAAAGAGTATACGTCATAGCATTTGTCATCTGTGAGGGAAGAAGAGAATTAACAGGAAA
CAAAAGTGTGAAAAACAAAGGTGGCGTATTACACCAGCTAAGTTCCAAACGAAGTTAGCACCAG
TGTGTCACGGTTGCAGGGGAGGAAGTTGGTCCCGGGCCAATCTAGAATGCGCAGGTGTGAGGAG
TGGAACTGCGTGGACAGTGCCTGACCGCCCTCTGGCAGAGGAGGCTGGGGCCGGGACTGCGGGC
ACCACCCCGGCGGTGTGTCCTGGCTCTGGGCTTGCACGGTGAAGCCTTGCTCAGATCTTAAGTG
TCATCCTTTGATCACTGTGGCCAGTCACGGTGCTGTGGAGCTGAGCAGATGGAGCTTCAAGGTG
GGGAAGAAGGATGCTGCCTGACCAGCAGGACGGCCGTGTCAGATATTGTAAGAGCAGAGGTCCC
GCGGCCAGAGCCCTGCAGCTTCCCCTTTCAGTCACTTGGAGTACTGACAGCATAGCGACAGCTG
ACTGGGCACGTGACCTGGTCTTGGTGCGCGCCAGCTTCCTCATCTTACGGTGACAGTTGTAATA
TACACACCCCGTGTCGTTATTGTCGTGTTTAAGTAAAGTACTTCGTGCACTGCCTGGCCAGTGG
GAAGGGCCCGGTAAGTGGTAGTTGCGGTGTTAGCGTGGTTGCAGTTGCTAGGCCTTTCACGGGC
CCTGTGGTTAGAGGCAGTGTGTACTCACGTAGGGGTAATGCCCGTGGCGTCTGCAGCAACAGCA
GTAATTGTGAAATCACTCGTCAAACGTTTCCTGTATGTGGGCTCCGTGGCTGCTTTTACCTCAG
CCGGCTCTGCCTGCAGGACAGAGGAGGGCAGCCGAAGGCCAGCGCTGAGAAAGTCACCTCGGCC
GCCTGTGGTGTGTGCCTGTGAGACAGTGATTGCTTCTGCTGGTCACTGAGGAGCTGGCAGTGCC
TGGTGTCCTGAAGTGAATCCGGCCCCACCCTCCGCTTTGGAAGCCTTTTCTTAGGATGAAATTC
TGTGGAGGTGGGGGGACTTTATGGCACAGACGAGGAGCAGACCTCCCTGCGATGTGGCGGCAGT
CCACACTGTTGAGGTGTGGTCTTGTGTAGGGCTTGCTTATAAATGCCGTTGGATAAACGCTGCC
CTGGTTACTTTTCTGTCACAGGCCACAGCACAGTAGTCGGTGATGTCACGTGTCCTCCCATCTG
CCCGTCAATCCCCCACATGAAGAGAATGCGTCCTGTGACACCAGTACTTTCTGGGGCTGACAGT
GTGAATAGCCTGACAGACCCAAAGGGCCGTGTGCTTCAGCGCTGTGGCCGTGGAGCAGTGGGAA
ATTGGGTGGGGCGAGGCAGGCTGGAGGAGGCAGAGCCCTCTGAGAAAAGTGTTCCGTTGCCCCA
GAAGTAGAGGTCTTCAGGTGGCTGTACGTATCAGGAGGAGGGGGGAAACCGTCTCTCTCATTCT
CCAGATTAAGAACATTTACTTCAGTTCAGCAGAGTCTATGTATTTATGTTTTGAACTGTTTATA
AAACAATAAAGATGCATCTCTTCAAATGTCGCAGTTCTAAATACA

hide sequence

RefSeq Acc Id:

XM_013515516 ⟹ XP_013370970

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955429	20,581,457 - 20,613,258 (-)	NCBI

Sequence:

show sequence

GCCTTGGCTTCCGCCGGAAGTGCCGCCATGTTGTTGCTGGCCTCGGGTGTTTGTGGGCGGCCGT
GGGCTGGCGGCCGTGTCTGGGTGAGGGGAGCAGCAGTTCCGAGGAGCCGGCCAGGGGGCGCAGG
CCACGTCCGGACCCGAGATGGACGTTCTGAAGTCCGAGATTCTCCGGAAGCGGCAGCTGGTGGA
GGACAGGAACCTGCTGGTGGAAAATAAAAAATATTTCAAACGTAGTGAACTTGCAAAAAAAGAA
GAGGAAGCATATTTTGAAAGATGTGGCTATAAGCCTATAAGTGAGAAGCCATCTGGAGAGATGC
CACCTAAAGAAGAGGACCAGAAACCACTAACTTCATCAAATCCAGTATTAGAACTTGAACTGGC
GGAAGAAAAATTACCCATGACTCTCTCCAGGCAAGAGGTAATCAGAAGATTGAGGGAAAGAGGA
GAGCCGATTAGACTGTTCGGCGAAACTGATTATGATGCTTTTCAGCGATTAAGAAAAATAGAAA
TCCTCACACCAGAAGTCAACAAGGGCTTGAGGAATGACCTAAAAGCGGCTTTGGATAAGATTGA
TCAGCAGTACCTCAATGAAATTGTGGGTGGTCAGGAACCTGGAGAGGAAGACACTCAGAATGAT
TTGAAAGTGCACGAAGAAAACACCACAATTGAGGAGTTAGAGGCCTTAGGAGAGTCTTTAGGAA
AGGGCGATGATCATAAGGACATGGACATCATCACCAAATTCCTGAAGTTTTTGCTTGGTGTTTG
GGCTAAAGAATTGAACGCCAGAGAAGATTACGTGAAACGCAGTGTGCAGGGTAAGCTGAACAGT
GCCACGCAGAAGCAGACCGAGTCCTATCTCAGACCACTTTTCAGAAAGCTCCGTAAAAGGAATC
TTCCTGCTGATATTAAAGAATCAATAACAGATATTATTAAATTCATGTTGCAGAGAGAATATGT
GAAGGCAAATGATGCTTACCTTCAGATGGCCATTGGAAATGCTCCCTGGCCTATTGGCGTCACC
ATGGTTGGTATCCATGCTAGAACTGGCAGGGAAAAGATTTTTTCCAAGCACGTTGCGCATGTAT
TAAACGATGAAACTCAGCGGAAATATATTCAGGGGCTGAAGAGGTTAATGACCATTTGCCAGAA
GCACTTTCCCACAGACCCATCAAAGTGTGTGGAGTACAATGCCCTGTGAGGTCCACACGCAGCA
AGCAAGAACCATGCGGAACTTCAGCACGCAGTGCGCAGACTTCTGTCATCACCAGCGGGAATGA
GGACGGAGAGAGCTGGAGCTTCCGGTCTCCGGATTCACTGCGGAGCTATGGTGGCTGTCACCTC
TGACACTGATTTCTGTGTCTTGCTTTCATTTTAAATCATGAAAACTTACATTCTGAAGGCTTTC
CCACAGCTACGTATGCAGACAGCAGTAACAGATGCGAATTTAAAGTGACTGACTAAAAGCTGGT
GATTAGATAATTAAAAGGAAACTTTGGAGGGTGCACCTAATTTTTCTGTGATTTGTACACAGTC
TTCTATGTATTATTTATAGAAAATATTTTTGCATATTTCAACAAAAATGGGGCCATTGAATGAG
ACTTGATCTTTGGCATTGTGCAGCATAATGAAATGTAAATGCGGTAGTGTTAGCTTAAGTGTTA
TTTTTCTTTTGTTTCAAAGCTTCCTTTATCTTCAAAAGAGTATACGTCATAGCATTTGTCATCT
GTGAGGGAAGAAGAGAATTAACAGGAAACAAAAGTGTGAAAAACAAAGGTGGCGTATTACACCA
GCTAAGTTCCAAACGAAGTTAGCACCAGTGTGTCACGGTTGCAGGGGAGGAAGTTGGTCCCGGG
CCAATCTAGAATGCGCAGGTGTGAGGAGTGGAACTGCGTGGACAGTGCCTGACCGCCCTCTGGC
AGAGGAGGCTGGGGCCGGGACTGCGGGCACCACCCCGGCGGTGTGTCCTGGCTCTGGGCTTGCA
CGGTGAAGCCTTGCTCAGATCTTAAGTGTCATCCTTTGATCACTGTGGCCAGTCACGGTGCTGT
GGAGCTGAGCAGATGGAGCTTCAAGGTGGGGAAGAAGGATGCTGCCTGACCAGCAGGACGGCCG
TGTCAGATATTGTAAGAGCAGAGGTCCCGCGGCCAGAGCCCTGCAGCTTCCCCTTTCAGTCACT
TGGAGTACTGACAGCATAGCGACAGCTGACTGGGCACGTGACCTGGTCTTGGTGCGCGCCAGCT
TCCTCATCTTACGGTGACAGTTGTAATATACACACCCCGTGTCGTTATTGTCGTGTTTAAGTAA
AGTACTTCGTGCACTGCCTGGCCAGTGGGAAGGGCCCGGTAAGTGGTAGTTGCGGTGTTAGCGT
GGTTGCAGTTGCTAGGCCTTTCACGGGCCCTGTGGTTAGAGGCAGTGTGTACTCACGTAGGGGT
AATGCCCGTGGCGTCTGCAGCAACAGCAGTAATTGTGAAATCACTCGTCAAACGTTTCCTGTAT
GTGGGCTCCGTGGCTGCTTTTACCTCAGCCGGCTCTGCCTGCAGGACAGAGGAGGGCAGCCGAA
GGCCAGCGCTGAGAAAGTCACCTCGGCCGCCTGTGGTGTGTGCCTGTGAGACAGTGATTGCTTC
TGCTGGTCACTGAGGAGCTGGCAGTGCCTGGTGTCCTGAAGTGAATCCGGCCCCACCCTCCGCT
TTGGAAGCCTTTTCTTAGGATGAAATTCTGTGGAGGTGGGGGGACTTTATGGCACAGACGAGGA
GCAGACCTCCCTGCGATGTGGCGGCAGTCCACACTGTTGAGGTGTGGTCTTGTGTAGGGCTTGC
TTATAAATGCCGTTGGATAAACGCTGCCCTGGTTACTTTTCTGTCACAGGCCACAGCACAGTAG
TCGGTGATGTCACGTGTCCTCCCATCTGCCCGTCAATCCCCCACATGAAGAGAATGCGTCCTGT
GACACCAGTACTTTCTGGGGCTGACAGTGTGAATAGCCTGACAGACCCAAAGGGCCGTGTGCTT
CAGCGCTGTGGCCGTGGAGCAGTGGGAAATTGGGTGGGGCGAGGCAGGCTGGAGGAGGCAGAGC
CCTCTGAGAAAAGTGTTCCGTTGCCCCAGAAGTAGAGGTCTTCAGGTGGCTGTACGTATCAGGA
GGAGGGGGGAAACCGTCTCTCTCATTCTCCAGATTAAGAACATTTACTTCAGTTCAGCAGAGTC
TATGTATTTATGTTTTGAACTGTTTATAAAACAATAAAGATGCATCTCTTCAAATGTCGCAGTT
CTAAATACA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005387217	(Get FASTA)	NCBI Sequence Viewer
	XP_013370970	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000017142
	ENSCLAP00000017142.1
	ENSCLAP00000017143
	ENSCLAP00000017143.1

RefSeq Acc Id:	XP_005387217 ⟸ XM_005387160
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VL32 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKMPPKEEDQKPLTSSNP VLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLK AALDKIDQQYLNEIVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFL KFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKF MLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKR LMTICQKHFPTDPSKCVEYNAL hide sequence

RefSeq Acc Id:	XP_013370970 ⟸ XM_013515516
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VT61 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKPISEKPSGEMPPKEED QKPLTSSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEV NKGLRNDLKAALDKIDQQYLNEIVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHK DMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIK ESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQ RKYIQGLKRLMTICQKHFPTDPSKCVEYNAL hide sequence

Ensembl Acc Id:

ENSCLAP00000017142 ⟸ ENSCLAT00000017311

Ensembl Acc Id:

ENSCLAP00000017143 ⟸ ENSCLAT00000017312

Protein Domains

Pre-mRNA processing factor 4 (PRP4)-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000011770	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000017311	ENTREZGENE
	ENSCLAT00000017311.1	UniProtKB/TrEMBL
	ENSCLAT00000017312	ENTREZGENE
	ENSCLAT00000017312.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.110	UniProtKB/TrEMBL
	Functional domain of the splicing factor Prp18	UniProtKB/TrEMBL
InterPro	Prp18	UniProtKB/TrEMBL
	PRP4-like	UniProtKB/TrEMBL
	PRP4-like_sf	UniProtKB/TrEMBL
	PRPF18	UniProtKB/TrEMBL
NCBI Gene	Prpf18	ENTREZGENE
PANTHER	PRE-MRNA-SPLICING FACTOR 18	UniProtKB/TrEMBL
	PTHR13007	UniProtKB/TrEMBL
Pfam	Prp18	UniProtKB/TrEMBL
	PRP4	UniProtKB/TrEMBL
SMART	SFM	UniProtKB/TrEMBL
Superfamily-SCOP	Functional domain of the splicing factor Prp18	UniProtKB/TrEMBL
	SSF158230	UniProtKB/TrEMBL
UniProt	A0A8C2VL32	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VT61	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

RGD Manual Annotations